Ifngr2 (interferon gamma receptor 2) - Rat Genome Database

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Gene: Ifngr2 (interferon gamma receptor 2) Rattus norvegicus
Analyze
Symbol: Ifngr2
Name: interferon gamma receptor 2
RGD ID: 1307532
Description: Predicted to enable type II interferon receptor activity. Involved in microglial cell activation. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in immunodeficiency 28. Orthologous to human IFNGR2 (interferon gamma receptor 2); PARTICIPATES IN Chagas disease pathway; cytokine mediated signaling pathway; influenza A pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; amitrole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC360697
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81144,265,703 - 44,283,975 (+)NCBIGRCr8
mRatBN7.21130,779,733 - 30,798,005 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1130,779,733 - 30,798,005 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1139,473,777 - 39,492,044 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01132,145,213 - 32,163,480 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01131,310,356 - 31,328,702 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01131,694,339 - 31,712,611 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1131,694,339 - 31,712,611 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01135,302,873 - 35,321,145 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41131,508,721 - 31,526,993 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11131,547,825 - 31,565,097 (+)NCBI
Celera1130,447,195 - 30,465,467 (+)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
cadmium selenide  (ISO)
cannabidiol  (ISO)
cantharidin  (ISO)
chloropicrin  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
DDE  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dichloromethane  (ISO)
disulfiram  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
ethylbenzene  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
ionomycin  (ISO)
isoprenaline  (ISO)
ketamine  (EXP)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (ISO)
methoxychlor  (EXP)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
nickel dichloride  (ISO)
o-xylene  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenytoin  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (ISO)
pyrrolidine dithiocarbamate  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloroethene  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
toluene  (ISO)
toluene 2,4-diisocyanate  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
plasma membrane  (IBA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Interferon-gamma potentiates NMDA receptor signaling in spinal dorsal horn neurons via microglia-neuron interaction. Sonekatsu M, etal., Mol Pain. 2016 Apr 18;12. pii: 12/0/1744806916644927. doi: 10.1177/1744806916644927. Print 2016.
Additional References at PubMed
PMID:16780588   PMID:25268627  


Genomics

Comparative Map Data
Ifngr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81144,265,703 - 44,283,975 (+)NCBIGRCr8
mRatBN7.21130,779,733 - 30,798,005 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1130,779,733 - 30,798,005 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1139,473,777 - 39,492,044 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01132,145,213 - 32,163,480 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01131,310,356 - 31,328,702 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01131,694,339 - 31,712,611 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1131,694,339 - 31,712,611 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01135,302,873 - 35,321,145 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41131,508,721 - 31,526,993 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11131,547,825 - 31,565,097 (+)NCBI
Celera1130,447,195 - 30,465,467 (+)NCBICelera
Cytogenetic Map11q11NCBI
IFNGR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382133,402,882 - 33,437,516 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2133,403,413 - 33,479,348 (+)EnsemblGRCh38hg38GRCh38
GRCh372134,775,188 - 34,809,823 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362133,697,072 - 33,731,696 (+)NCBINCBI36Build 36hg18NCBI36
Build 342133,697,071 - 33,731,696NCBI
Celera2119,965,288 - 19,999,915 (+)NCBICelera
Cytogenetic Map21q22.11NCBI
HuRef2120,243,995 - 20,278,386 (+)NCBIHuRef
CHM1_12134,337,541 - 34,372,485 (+)NCBICHM1_1
T2T-CHM13v2.02131,775,143 - 31,809,789 (+)NCBIT2T-CHM13v2.0
Ifngr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391691,343,947 - 91,360,895 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1691,343,960 - 91,362,511 (+)EnsemblGRCm39 Ensembl
GRCm381691,547,059 - 91,564,007 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1691,547,072 - 91,565,623 (+)EnsemblGRCm38mm10GRCm38
MGSCv371691,547,339 - 91,564,252 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361691,435,953 - 91,452,866 (+)NCBIMGSCv36mm8
Celera1692,623,882 - 92,640,783 (+)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1653.07NCBI
Ifngr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540732,843,846 - 32,862,997 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540732,846,927 - 32,863,155 (+)NCBIChiLan1.0ChiLan1.0
IFNGR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22229,511,266 - 29,545,324 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12124,370,656 - 24,404,725 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02119,760,314 - 19,794,851 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12133,142,741 - 33,169,137 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2133,135,048 - 33,169,137 (+)Ensemblpanpan1.1panPan2
IFNGR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13128,909,930 - 28,948,742 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3128,008,730 - 28,047,586 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03128,215,580 - 28,254,378 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3128,224,956 - 28,254,374 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13128,082,877 - 28,121,722 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03128,095,920 - 28,134,930 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03128,596,533 - 28,635,303 (+)NCBIUU_Cfam_GSD_1.0
Ifngr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497128,530,468 - 28,585,909 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365008,882,435 - 8,901,281 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365008,881,921 - 8,937,355 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFNGR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13197,007,303 - 197,035,604 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113197,007,303 - 197,035,604 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
IFNGR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1258,743,365 - 58,779,922 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl258,743,922 - 58,779,356 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660711,245,937 - 1,285,069 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ifngr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474521,628,797 - 21,651,652 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474521,628,968 - 21,652,305 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ifngr2
117 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:450
Count of miRNA genes:228
Interacting mature miRNAs:268
Transcripts:ENSRNOT00000002779
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat

Markers in Region
RH129605  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,796,823 - 30,796,988 (+)MAPPERmRatBN7.2
Rnor_6.01131,711,430 - 31,711,594NCBIRnor6.0
Rnor_5.01135,319,964 - 35,320,128UniSTSRnor5.0
RGSC_v3.41131,525,812 - 31,525,976UniSTSRGSC3.4
Celera1130,464,286 - 30,464,450UniSTS
RH 3.4 Map11179.5UniSTS
Cytogenetic Map11q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 21 117 123 60 69 60 9 244 73 103 57
Low 24 104 87 87 24 36 42 42 24
Below cutoff

Sequence


Ensembl Acc Id: ENSRNOT00000002779   ⟹   ENSRNOP00000002779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1130,779,733 - 30,798,005 (+)Ensembl
Rnor_6.0 Ensembl1131,694,339 - 31,712,611 (+)Ensembl
RefSeq Acc Id: NM_001108313   ⟹   NP_001101783
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,265,703 - 44,283,975 (+)NCBI
mRatBN7.21130,779,733 - 30,798,005 (+)NCBI
Rnor_6.01131,694,339 - 31,712,611 (+)NCBI
Rnor_5.01135,302,873 - 35,321,145 (+)NCBI
RGSC_v3.41131,508,721 - 31,526,993 (+)RGD
Celera1130,447,195 - 30,465,467 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001101783 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM10726 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000002779.5
RefSeq Acc Id: NP_001101783   ⟸   NM_001108313
- Peptide Label: precursor
- UniProtKB: D4A109 (UniProtKB/TrEMBL),   A6JLG1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002779   ⟸   ENSRNOT00000002779
Protein Domains
Fibronectin type-III

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A109-F1-model_v2 AlphaFold D4A109 1-330 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698056
Promoter ID:EPDNEW_R8581
Type:initiation region
Name:Ifngr2_1
Description:interferon gamma receptor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01131,694,359 - 31,694,419EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307532 AgrOrtholog
BioCyc Gene G2FUF-21881 BioCyc
Ensembl Genes ENSRNOG00000002032 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002779.6 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_sf UniProtKB/TrEMBL
  FN_III UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Interferon_alpha/beta_rcpt_bsu UniProtKB/TrEMBL
  Type-II_Cytokine-TF_Rcpt UniProtKB/TrEMBL
KEGG Report rno:360697 UniProtKB/TrEMBL
NCBI Gene 360697 ENTREZGENE
PANTHER INTERFERON GAMMA RECEPTOR 2 UniProtKB/TrEMBL
  INTERFERON/INTERLEUKIN RECEPTOR UniProtKB/TrEMBL
Pfam Interfer-bind UniProtKB/TrEMBL
  Tissue_fac UniProtKB/TrEMBL
PhenoGen Ifngr2 PhenoGen
PROSITE FN3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002032 RatGTEx
Superfamily-SCOP FN_III-like UniProtKB/TrEMBL
UniProt A6JLG1 ENTREZGENE, UniProtKB/TrEMBL
  D4A109 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Ifngr2  interferon gamma receptor 2   Ifngr2_predicted  interferon gamma receptor 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ifngr2_predicted  interferon gamma receptor 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED