Ccdc32 (coiled-coil domain containing 32) - Rat Genome Database

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Gene: Ccdc32 (coiled-coil domain containing 32) Rattus norvegicus
Analyze
Symbol: Ccdc32
Name: coiled-coil domain containing 32
RGD ID: 1307516
Description: Predicted to be involved in cilium organization; head development; and regulation of clathrin-dependent endocytosis. Predicted to be located in clathrin-coated pit. Orthologous to human CCDC32 (coiled-coil domain containing 32); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-methoxyethanol; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coiled-coil domain-containing protein 32; gene model 631, (NCBI); Gm631; LOC296081; uncharacterized protein C15orf57 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83126,452,293 - 126,464,845 (-)NCBIGRCr8
mRatBN7.23105,998,429 - 106,010,985 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3105,998,430 - 106,010,975 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3109,671,754 - 109,684,389 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03118,267,295 - 118,279,931 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03115,927,670 - 115,940,308 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03110,816,327 - 110,828,824 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3110,816,337 - 110,828,879 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03117,353,970 - 117,366,467 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43105,522,250 - 105,535,444 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13105,418,677 - 105,431,872 (-)NCBI
Celera3104,912,318 - 104,924,549 (-)NCBICelera
Cytogenetic Map3q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Ccdc32
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83126,452,293 - 126,464,845 (-)NCBIGRCr8
mRatBN7.23105,998,429 - 106,010,985 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3105,998,430 - 106,010,975 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3109,671,754 - 109,684,389 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03118,267,295 - 118,279,931 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03115,927,670 - 115,940,308 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03110,816,327 - 110,828,824 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3110,816,337 - 110,828,879 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03117,353,970 - 117,366,467 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43105,522,250 - 105,535,444 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13105,418,677 - 105,431,872 (-)NCBI
Celera3104,912,318 - 104,924,549 (-)NCBICelera
Cytogenetic Map3q35NCBI
CCDC32
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381540,520,993 - 40,565,042 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1540,528,683 - 40,565,054 (-)EnsemblGRCh38hg38GRCh38
GRCh371540,813,192 - 40,857,241 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361538,632,590 - 38,644,544 (-)NCBINCBI36Build 36hg18NCBI36
Celera1517,611,408 - 17,625,148 (-)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1517,688,881 - 17,704,031 (-)NCBIHuRef
CHM1_11540,965,385 - 40,977,334 (-)NCBICHM1_1
T2T-CHM13v2.01538,328,359 - 38,370,734 (-)NCBIT2T-CHM13v2.0
Ccdc32
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392118,848,260 - 118,859,887 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2118,848,260 - 118,859,874 (-)EnsemblGRCm39 Ensembl
GRCm382119,017,779 - 119,029,406 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2119,017,779 - 119,029,393 (-)EnsemblGRCm38mm10GRCm38
MGSCv372118,843,515 - 118,855,129 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362118,709,602 - 118,720,798 (-)NCBIMGSCv36mm8
Celera2120,168,996 - 120,181,326 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.82NCBI
Ccdc32
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554167,462,770 - 7,479,242 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554167,464,498 - 7,482,153 (-)NCBIChiLan1.0ChiLan1.0
CCDC32
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21629,757,582 - 29,810,602 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11533,909,119 - 33,962,110 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01519,466,344 - 19,510,553 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11537,726,474 - 37,763,602 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1537,726,474 - 37,763,602 (-)Ensemblpanpan1.1panPan2
CCDC32
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1307,719,932 - 7,730,642 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl307,720,519 - 7,728,663 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha307,773,640 - 7,784,347 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0307,845,779 - 7,856,492 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl307,842,400 - 7,856,373 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1307,769,951 - 7,780,639 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0307,876,462 - 7,887,148 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0308,005,347 - 8,016,067 (-)NCBIUU_Cfam_GSD_1.0
Ccdc32
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864086,168,007 - 86,180,040 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364714,015,824 - 4,028,070 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364714,016,063 - 4,028,040 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC32
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,753,186 - 130,764,746 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11130,753,107 - 130,764,747 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CCDC32
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12642,440,362 - 42,453,531 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2642,440,392 - 42,452,713 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604898,497,560 - 98,531,867 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc32
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248047,850,945 - 7,867,045 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248047,851,669 - 7,867,037 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccdc32
62 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:262
Count of miRNA genes:160
Interacting mature miRNAs:192
Transcripts:ENSRNOT00000013963
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3102200529115665732Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)396127817115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)384091273129091273Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)380800231114297550Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat

Markers in Region
BE101529  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23105,999,477 - 105,999,656 (+)MAPPERmRatBN7.2
Rnor_6.03110,817,376 - 110,817,554NCBIRnor6.0
Rnor_5.03117,355,019 - 117,355,197UniSTSRnor5.0
RGSC_v3.43105,523,299 - 105,523,477UniSTSRGSC3.4
Celera3104,913,367 - 104,913,545UniSTS
RH 3.4 Map3913.6UniSTS
Cytogenetic Map3q35UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000013963   ⟹   ENSRNOP00000013963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3105,998,430 - 106,010,975 (-)Ensembl
Rnor_6.0 Ensembl3110,816,337 - 110,828,879 (-)Ensembl
RefSeq Acc Id: NM_001024245   ⟹   NP_001019416
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83126,452,293 - 126,464,845 (-)NCBI
mRatBN7.23105,998,429 - 106,010,985 (-)NCBI
Rnor_6.03110,816,327 - 110,828,824 (-)NCBI
Rnor_5.03117,353,970 - 117,366,467 (-)NCBI
RGSC_v3.43105,522,250 - 105,535,444 (-)RGD
Celera3104,912,318 - 104,924,549 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001019416 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH93612 (Get FASTA)   NCBI Sequence Viewer  
  EDL79888 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000013963.4
GenBank Protein Q561K4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001019416   ⟸   NM_001024245
- UniProtKB: Q561K4 (UniProtKB/Swiss-Prot),   A6HPD7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013963   ⟸   ENSRNOT00000013963

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q561K4-F1-model_v2 AlphaFold Q561K4 1-179 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692316
Promoter ID:EPDNEW_R2841
Type:multiple initiation site
Name:Ccdc32_1
Description:coiled-coil domain containing 32
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03110,828,869 - 110,828,929EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307516 AgrOrtholog
BioCyc Gene G2FUF-48224 BioCyc
Ensembl Genes ENSRNOG00000010472 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000013963.8 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7307602 IMAGE-MGC_LOAD
InterPro CCDC32 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:296081 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105687 IMAGE-MGC_LOAD
NCBI Gene 296081 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 32 UniProtKB/Swiss-Prot
  COILED-COIL DOMAIN-CONTAINING PROTEIN 32 UniProtKB/TrEMBL
  COILED-COIL DOMAIN-CONTAINING PROTEIN 32 UniProtKB/TrEMBL
  PTHR31800 UniProtKB/Swiss-Prot
Pfam CCDC32 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ccdc32 PhenoGen
RatGTEx ENSRNOG00000010472 RatGTEx
UniProt A6HPD7 ENTREZGENE, UniProtKB/TrEMBL
  CCD32_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Ccdc32  coiled-coil domain containing 32  Gm631  gene model 631, (NCBI)  Symbol and Name updated 1299863 APPROVED
2005-12-06 Gm631  gene model 631, (NCBI)  Gm631_predicted  gene model 631, (NCBI) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Gm631_predicted  gene model 631, (NCBI) (predicted)      Symbol and Name status set to approved 70820 APPROVED