References
References - curated
Additional References at PubMed
Genomics
Variants
miRNA Target Status
Predicted Target Of
Summary Value | Count of predictions: | 22 | Count of miRNA genes: | 21 | Interacting mature miRNAs: | 22 | Transcripts: | ENSRNOT00000061648 | Prediction methods: | Miranda, Rnahybrid | Result types: | miRGate_prediction | |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
Markers in Region
BE113910 |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPMLow: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | 7 | ||||||||||||
Medium | 1 | 1 | |||||||||||
Low | 1 | 2 | 5 | 2 | 5 | 2 | 4 | 6 | 16 | 17 | 3 | 4 | 4 |
Below cutoff | 2 | 22 | 24 | 13 | 12 | 13 | 2 | 2 | 51 | 15 | 24 | 6 | 2 |
Sequence
Nucleotide Sequences
RefSeq Acc Id: | ENSRNOT00000061648 ⟹ ENSRNOP00000058363 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001013142 ⟹ NP_001013160 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
Protein Sequences
Protein RefSeqs | NP_001013160 | (Get FASTA) | NCBI Sequence Viewer |
GenBank Protein | AAH78975 | (Get FASTA) | NCBI Sequence Viewer |
EDL87243 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000058363 | ||
ENSRNOP00000058363.2 |
RefSeq Acc Id: | NP_001013160 ⟸ NM_001013142 |
- UniProtKB: | Q6AYN6 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000058363 ⟸ ENSRNOT00000061648 |
Protein Structures
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q6AYN6-F1-model_v2 | AlphaFold | Q6AYN6 | 1-167 | view protein structure |
Transcriptome
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Promoters
RGD ID: | 13700912 | ||||||||
Promoter ID: | EPDNEW_R11436 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Cmtm2a_1 | ||||||||
Description: | CKLF-like MARVEL transmembrane domain containing 2A | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Additional Information
External Database Links
Database | Acc Id | Source(s) |
AGR Gene | RGD:1307501 | AgrOrtholog |
BioCyc Gene | G2FUF-6638 | BioCyc |
Ensembl Genes | ENSRNOG00000025420 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000061648 | ENTREZGENE |
ENSRNOT00000061648.4 | UniProtKB/TrEMBL | |
IMAGE_CLONE | IMAGE:7111936 | IMAGE-MGC_LOAD |
InterPro | Marvel | UniProtKB/TrEMBL |
KEGG Report | rno:307616 | UniProtKB/TrEMBL |
MGC_CLONE | MGC:93857 | IMAGE-MGC_LOAD |
NCBI Gene | 307616 | ENTREZGENE |
PhenoGen | Cmtm2a | PhenoGen |
PROSITE | MARVEL | UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000025420 | RatGTEx |
UniProt | Q6AYN6 | ENTREZGENE, UniProtKB/TrEMBL |
Nomenclature History
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2008-03-03 | Cmtm2a | CKLF-like MARVEL transmembrane domain containing 2A | Cklfsf1 | chemokine-like factor super family 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-12-06 | Cklfsf1 | chemokine-like factor super family 1 | Cklfsf1_predicted | chemokine-like factor super family 1 (predicted) | Symbol and Name updated | 1559027 | APPROVED |
2005-01-12 | Cklfsf1_predicted | chemokine-like factor super family 1 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |