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Gene: Knl1 (kinetochore scaffold 1) Rattus norvegicus

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Symbol:

Knl1

Name:

kinetochore scaffold 1

RGD ID:

1307498

Description:

Predicted to enable microtubule binding activity. Predicted to be involved in nuclear chromosome segregation; protein localization to kinetochore; and regulation of metaphase/anaphase transition of cell cycle. Predicted to be located in acrosomal vesicle; kinetochore; and nuclear body. Predicted to be part of Knl1/Spc105 complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly; primary autosomal recessive microcephaly 4; and sarcoma. Orthologous to human KNL1 (kinetochore scaffold 1); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cancer susceptibility candidate 5; Casc5; LOC100911204; LOC102549359; LOC311327; protein CASC5-like; RAD51 homolog; uncharacterized LOC102549359

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KNL1 (kinetochore scaffold 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Knl1 (kinetochore scaffold 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Knl1 (kinetochore scaffold 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KNL1 (kinetochore scaffold 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KNL1 (kinetochore scaffold 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Knl1 (kinetochore scaffold 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KNL1 (kinetochore scaffold 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	KNL1 (kinetochore scaffold 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Knl1 (kinetochore scaffold 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PGGT1B (protein geranylgeranyltransferase type I subunit beta)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	KNL1 (kinetochore scaffold 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Knl1 (kinetochore scaffold 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	knl1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	126,483,498 - 126,545,774 (+)	NCBI		GRCr8
mRatBN7.2	3	106,029,627 - 106,091,915 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	106,029,661 - 106,091,915 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	109,710,464 - 109,764,974 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	118,306,007 - 118,360,519 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	115,966,384 - 116,020,898 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	110,847,304 - 110,909,807 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	110,855,000 - 110,909,807 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	117,385,194 - 117,453,522 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	105,561,365 - 105,615,047	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	104,950,722 - 105,005,517 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colorectal cancer (ISO)

COVID-19 (ISO)

Familial Prostate Cancer (ISO)

genetic disease (ISO)

microcephaly (ISO)

mosaic variegated aneuploidy syndrome 1 (ISO)

primary autosomal recessive microcephaly (ISO)

primary autosomal recessive microcephaly 4 (ISO)

sarcoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3,4-dichloroaniline (ISO)

3,7-dihydropurine-6-thione (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (EXP)

aflatoxin M1 (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

choline (ISO)

clobetasol (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

D-glucose (ISO)

deguelin (ISO)

dexamethasone (ISO)

diallyl trisulfide (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

dimethylarsinic acid (EXP)

disodium selenite (ISO)

diuron (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

fenpyroximate (ISO)

folic acid (ISO)

FR900359 (ISO)

fructose (ISO)

furan (EXP)

geldanamycin (ISO)

gentamycin (EXP)

glucose (ISO)

glyphosate (ISO)

Heliotrine (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

ivermectin (ISO)

L-methionine (ISO)

lead(0) (ISO)

leflunomide (ISO)

lucanthone (ISO)

MeIQx (ISO)

mercaptopurine (EXP)

methotrexate (ISO)

N-Nitrosopyrrolidine (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

pentanal (ISO)

perfluorononanoic acid (ISO)

phenformin (EXP)

picoxystrobin (ISO)

progesterone (ISO)

propanal (ISO)

purine-6-thiol (EXP)

quercetin (ISO)

resveratrol (ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

senecionine (EXP)

Senkirkine (EXP)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (EXP,ISO)

tetrachloromethane (ISO)

thimerosal (ISO)

thioacetamide (EXP)

titanium dioxide (EXP,ISO)

topotecan (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

attachment of spindle microtubules to kinetochore (IBA,ISO)

biological_process (ND)

cell division (IEA)

homologous chromosome orientation in meiotic metaphase I (ISO)

mitotic sister chromatid segregation (ISO)

positive regulation of meiosis I spindle assembly checkpoint (ISO)

protein localization to kinetochore (IBA,ISO)

regulation of mitotic cell cycle spindle assembly checkpoint (ISO)

Cellular Component

acrosomal vesicle (ISO)

cytoplasm (ISO)

kinetochore (ISO)

Knl1/Spc105 complex (ISO)

nuclear body (IEA,ISO)

nucleoplasm (ISO)

nucleus (IBA,ISO)

outer kinetochore (ISO)

Molecular Function

microtubule binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Kinetochore KMN network gene CASC5 mutated in primary microcephaly.	Genin A, etal., Hum Mol Genet. 2012 Dec 15;21(24):5306-17. doi: 10.1093/hmg/dds386. Epub 2012 Sep 13.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Comprehensive gene review and curation	RGD comprehensive gene curation
9.	A phase II study of ENMD-2076 in advanced soft tissue sarcoma (STS).	Veitch Z, etal., Sci Rep. 2019 May 14;9(1):7390. doi: 10.1038/s41598-019-43222-6.

Genomics

Comparative Map Data

Knl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	126,483,498 - 126,545,774 (+)	NCBI		GRCr8
mRatBN7.2	3	106,029,627 - 106,091,915 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	106,029,661 - 106,091,915 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	109,710,464 - 109,764,974 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	118,306,007 - 118,360,519 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	115,966,384 - 116,020,898 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	110,847,304 - 110,909,807 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	110,855,000 - 110,909,807 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	117,385,194 - 117,453,522 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	105,561,365 - 105,615,047	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	104,950,722 - 105,005,517 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

KNL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	40,594,249 - 40,664,342 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	40,594,020 - 40,664,342 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	40,886,447 - 40,956,540 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	38,673,739 - 38,742,173 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	15	17,654,336 - 17,722,770 (+)	NCBI		Celera
Cytogenetic Map	15	q15.1	NCBI
HuRef	15	17,733,703 - 17,802,065 (+)	NCBI		HuRef
CHM1_1	15	41,006,562 - 41,074,962 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	38,399,974 - 38,470,044 (+)	NCBI		T2T-CHM13v2.0

Knl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	118,877,600 - 118,940,978 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	118,877,600 - 118,935,982 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	119,047,119 - 119,110,497 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	119,047,119 - 119,105,501 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	118,872,855 - 118,929,857 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	118,738,474 - 118,795,562 (+)	NCBI		MGSCv36	mm8
MGSCv36	2	119,993,968 - 120,051,070 (+)	NCBI		MGSCv36	mm8
Celera	2	120,199,115 - 120,256,832 (+)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI
cM Map	2	59.85	NCBI

Knl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	7,500,415 - 7,562,273 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955416	7,498,983 - 7,561,620 (+)	NCBI	ChiLan1.0	ChiLan1.0

KNL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	29,839,231 - 29,909,645 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	33,990,711 - 34,061,124 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	19,539,264 - 19,609,593 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	37,792,411 - 37,856,095 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	37,801,705 - 37,860,858 (+)	Ensembl	panpan1.1		panPan2

KNL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	7,753,515 - 7,825,019 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	7,753,432 - 7,821,588 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	7,807,365 - 7,878,953 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	7,879,642 - 7,951,470 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	7,879,704 - 7,947,949 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	7,803,766 - 7,875,282 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	7,910,285 - 7,981,708 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	8,039,288 - 8,110,906 (+)	NCBI		UU_Cfam_GSD_1.0

Knl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	86,231,814 - 86,262,142 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	4,059,995 - 4,109,413 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	4,079,877 - 4,110,205 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KNL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	1	130,652,493 - 130,728,989 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

KNL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	42,342,741 - 42,409,466 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666048	98,564,109 - 98,634,701 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Knl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624804	7,889,689 - 7,952,384 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624804	7,884,580 - 7,952,567 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Knl1
218 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	115665732	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
1582216	Bw65	Body weight QTL 65	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	102200529	115665732	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582219	Bw63	Body weight QTL 63	3.8	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	3	96127817	115665732	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	64655305	115665732	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	64655305	115665732	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	84091273	129091273	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	50437504	115638231	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	73376539	118376539	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	91797474	136797474	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	80800231	114297550	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	97084464	142084464	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	89772419	134772419	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	95735366	140735366	Rat

Markers in Region

RH131249

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	106,084,731 - 106,084,915 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	110,902,624 - 110,902,807	NCBI	Rnor6.0
Rnor_5.0	3	117,446,339 - 117,446,522	UniSTS	Rnor5.0
Rnor_5.0	3	117,440,265 - 117,440,448	UniSTS	Rnor5.0
RGSC_v3.4	3	105,609,613 - 105,609,796	UniSTS	RGSC3.4
Celera	3	104,998,333 - 104,998,516	UniSTS
RH 3.4 Map	3	913.1	UniSTS
Cytogenetic Map	3	q35	UniSTS

BI278484

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	106,064,136 - 106,064,299 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	110,882,030 - 110,882,192	NCBI	Rnor6.0
Rnor_5.0	3	117,419,673 - 117,419,835	UniSTS	Rnor5.0
RGSC_v3.4	3	105,588,651 - 105,588,813	UniSTS	RGSC3.4
Celera	3	104,977,745 - 104,977,907	UniSTS
RH 3.4 Map	3	913.5	UniSTS
Cytogenetic Map	3	q35	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	10	49	113	90	89	58	25	58	6	216	96	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001170594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000041727 ⟹ ENSRNOP00000050682

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	106,029,661 - 106,091,915 (+)	Ensembl
Rnor_6.0 Ensembl	3	112,531,703 - 112,560,634 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081613 ⟹ ENSRNOP00000075477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	106,029,661 - 106,091,915 (+)	Ensembl
Rnor_6.0 Ensembl	3	110,855,000 - 110,909,807 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102895 ⟹ ENSRNOP00000087241

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	106,029,661 - 106,091,915 (+)	Ensembl

RefSeq Acc Id:

NM_001170594 ⟹ NP_001164065

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	126,490,966 - 126,545,774 (+)	NCBI
mRatBN7.2	3	106,037,108 - 106,091,915 (+)	NCBI
Rnor_6.0	3	110,855,000 - 110,909,807 (+)	NCBI
Rnor_5.0	3	117,385,194 - 117,453,522 (+)	NCBI
Celera	3	104,950,722 - 105,005,517 (+)	NCBI

Sequence:

show sequence

ATGGATGGGATATATTCAGAGGCTAATGAAGAGAATGACAATACACAGAGGCCTGTTAGAAGAC
AGCATTCCTCAATTTTGAAACCCCCAAGGAGTCCTCTTCAGGACCTCAAATGTGGAAATGAAAT
AGTTCAGGAATCTAATGCTCCGAGAACCAGGAAAAGCTCTCGTCGGGTCAGCTTTGCAGATACT
ATAAAAGTATTCCAGACAGAGTCCCATATGAAAACGGAAAAAAATTCAGAAATTTCAGGAATGA
ACACTTTGCTTTGTGCTCCAATTCAGACTCAGATGCAACAAAAGGAGTTTTCAATTACAGACTG
CAACCCTGAAAGGAAACATGCAAATGATCAAACAGTCATCTTTTCAGATGAAAATCAGATGGAT
CTGACAGCAAGTCACACGGTGATGATTGCCAAAGGTCTTGTAGACTGTACCAAACATGAAAATT
CCACAAAAATAGATACCACATCCTTTCTGGAGAATTTAAAGCATCGTGCTGCGAATTCAAGAGT
TAAAAACGATTTAGCATGTCCAATAATTTCTATAAATCAAAACATTTTTTCAGAAAAGAAAAAT
TCTGACAACTTCATAAAAAGATTGAAAATGGGGAAATATAATACTTCTTCTACAGAACTTGATA
AGGAAAATGCTGAAATACCTGTTCATTCCAAAGACTCAAACAGTGCCTCTTCCACGTGTCAAAT
ACATGCATCGCTTAGTGTCGATGAACATAGTAGTAATAAGACTAGACTCTTTACAGAACAAGAT
GATGGGATGAATTTGACCCAGTGTCATACAGCCTGTATTCAGACTTGGATTCCTCCATCCAGGG
AGGCCACCTTGGGAGAGGTTAAAGGTGATAATACAATTTATGGCAATGAGTGTATGGAGTTGAC
AACTAACTACACGATACAGGTGTTGTCATCAGAAAATAACTTACCTGAAAGAGAAAATCAAGCT
CAAAATGATGTGATTGATGTTACAACAGTCGATGGAGCTACAGCTCCAGAGAAAAAAACAGCCC
TTAAGGATAAACTAAATGCTGCTTTTCACAGCTCTTTCCCAAACCCTGAAAATAAACTTCATAT
TACCAAATGTCATCCTATAGAGTCAGAAACTCATACAGTCACACAGATTTCTAATCAAAATGCC
AACACATTGGCTATGACCTCAGAATCTGTATGTTCTAGCCCAGCTATTCAAGGGTATAAAACAA
TTTTTTACTCTAGTAGCAATGATGCAATGGAACTGACTAAGTGTCTATCAATTATGCAAGAGGA
AAAAAAATTGCTGAAGACTGATGATAAGTATTCTAAAATATGTACCAATTCAGATGCTAGCCCA
CTCAGAGAGAAAACTATTTATTCAGAAGAGGATAGCATGGACATTACCAAAAGTCACACAGTTG
CAATAGATAATAAGATATTTAAACATGATCAAGAAAACATTAAAAAAGAAATAACAGCTCTACC
AATATTTGAAAAAGAAATGATGCTCCAAAATCTTAAAACTATGTCCAAAGATGAGAAAATGAAT
GTGAATTCTATTACAGTTCCTCAAGTATCTAAAGAAAGTTTACAACAGAGTCTGACAAATGCCT
TATCTATTTCATTGGCTGATAAAACAATGGAATTCTTAGCAGGTGAAGATATGGATTTGACTAA
AAGTCACACAACTAAGTTAAGTCAAGTTATTCCTACAACTTTTGACTTAGCATCAAAGAATGTC
ACCAAATCTTCCTCTCACAGCAAAAGCCCTTCAGATGAGTGGGAAGGCCTGGAAAAACAAATTG
TGCTAGGCCAGCATTCTAAACTTCCTTCACCACAGAGGAAAGATTTAGATGATCCTGACTGTTC
TCATCATAAGATAATGTATTCAGAGGAGGTACAAACTATGGATCTAACCAAGAGCCACACTATT
GTGATTGGGTTTGGTTCTTCTGAGGTACAAGAACACAGTAAGATTAATTTAGAACACAAAAGCA
GCCAACTTACAGCAGAAAACAGACAAACAGCTGTGAACATTCCTGGAATAAACTTTAGAGTAGT
AACAACTAATGATATGGACATGTTAAAGGACAGAAGTATACATAAGCCAGAATTGCTGGAGGAA
AAGCAAAACGTCAAAATTTATGGAAGAAAAAGTATGGGTGGACTGAAGATTGATAAAACTATAT
TATTTTCAGAGGGTAATGAGGATGATATGGATATCACTAAGAGTTGCACAGTCAAAATAAACCA
TCGGTCTTTATTAGATAAACATGATTCTCATTTAGTATCTTTGGCAGGAACTTCTAAAACCATT
TTGCATGCACGTGGACAGGATGAAATGGAAATTAATAGAAATCACACGACTCCTTTAGAGTGTA
AAATTATCTCACCCAGTGATATAACTTCTGGTGATCTGAGTAAGACTGTGATGTCTATAGATGA
TCATGAGGAACTAGAAATGACTAAGTCCCATACTGTTTTCATTGACTACCAAGCAGAGGCAAAA
GGTGTACTTCCAGACAGACTTGACTTTCAATTATCCAAAAAGAAAAGCCTACAGAAGCCAAAAA
TGACATCTACTCATGCTGAAGAGATTGTTTCCATTTCAAAAAATAGTGAAAGCAACTATCTACC
AGCCAAAGGCAGCCAGGTAACAATATTAGAGGAAGGATCTAATAGTGGGCCTGGGGAAGAAACT
AATGATGCACAAAAGCCTGGATTTCTGAATGAACCTCTGTCAGGCAAAACTCAAAGAAGAGAAA
GCCTTAAGCTCAAAAATAAGACTATTACATTTTCAGGAAATGATAAAAGTAATAGAGATATCAC
TCAGAGTTCTGTGGTAGAAATAAATAATGAAACTAACCTGGAAGATAGAAAGGGCTTCAGTTTT
GTGCCATTGGCAGGAACTTCCAAGCCAGTTTTATCTGCATATCGGCCAGAGGACATGGAGATCT
CTATAAGTCAAACCTCTGCTTCGGAGTATAAAACTATCCCACCAGATGAAATGACTACTATACC
TATGGATAAAACTGTAATGTTTGTAGATAATCTCAGTGATCTGGGTGTCACCAGATCCCATACG
TTTTTCATCGATTGTCAAGCCAAAGAGAAAGTACTTCATGAATATACCAACTTGGGAATACCAA
AACCACAAAACTTGAGTGGTTCTGAAGATAATTCCTGTATTCAAGAAATCACCAAAAAACCAGT
AGCTGAATACAAACACCATATGACAACTGTTATTCCTTCTAATACATTATTTAGTGATCAAAGT
ACAATGAAAATCAAGATGCATAAAGCTGATATAGATGAAGAGGGCATAGGAAAGGAAGTGGAGG
CCGATACATTGAAACAAACTAAACTTGAAAGGTGTCTGTTAAATAGAACTGATGGAAAAAATGT
GGATTTTACAAGTAGTCATATAGCTGATGTTTGTACATCCAGAGACAAGTATTCCTCTTTACCA
AATGTTATTTCTTCTTCTGATAATTTAGATAGTAATACTAAGTCCTTGTGTGATAAAAGTAGGG
AGAAAGCTTATAATTGCCAAGTGCCAAATGAGTTTACTTTTGCAGATAATTTACCAAGTAGATA
TCACCTGGATTCTGAAATACCATCTGTCTTTGTATCATGTCCTTCAAAAGAAGTTACTCAAACT
GAAAGTGCCATAGCACTACTTCAAGATCAAGATCAAGAGCCTCTGGGACTCTCAAAGTGTGCAT
CTCTTAAGTGTGCAAAGGATCAAATGGAGGCCTTTGTTGATGTTAGTGTTGCTTCTCAGCCTCA
TCTCTCAGCCCAACAACCTCCATCAACTCAAAAAGGGCAGGATGCCGCCAATAGAGATGAAGGA
ATGCTATCTAAAGCTGGGAAGAAGACTTTACCTTTTCTTATAGGAAATGTCTCTGCACCCACAT
GTGAAAATGCGTCCAAAATGCCTACTAATGAGGAACACTTTGCTGTAACCTATAACAAAGAACT
GGAAAAAAGTATTCAAACAGATAAATGTAATACAAATGTACACAACCATAGTAACTCAGTCCTG
ACAACACAAGTCATTCAAACACATGCCAGTGCCGAAGCAGCATCAGACTCTATAGTTCCATCTA
ATGGTTCCTGTTTTAGTAGTGCCAAACCAAGTCTGAGTAATTTGAATAGAAAAACTGGGAAGGT
TTTAGACTTTAATACTGTTCATATATTACCTCCTGCAGAACAGTTACTTGAAGCAGGAAATCAG
GCACATAGTATGAGTATAGTACAAGGTACAGAAATACATAGCCTAGGTTCCAGCAATGACAGAG
ATAAAGAAAGTAAAACTCTGCATAATGAGGCCGAAGCTACATCTGTACCACTAAAAGCAGTTGT
TAAAGACAAAGCAAGAAGATGTTCATTGGGAATATTTTTACCCAAATTACCAAACAAGAAAAGT
TGTAGTATCACTGGTGTTGATGATGTGGAACAGATTCTAGCAGATGCAACTGACTTAACTCACC
TAGAAACTCAGCCAGTCTGTAGTCAAGATCCGGGCATTGGCTCTGTTGCAGCCAAACTGAACTT
GAGTCCATCTCAGTATATAAATGAGGAGAATCTCCCTGTATATCCCGGTGAGATACTTTCATCA
GATTCTGTCATCCTGGACATTGAGGAAAGTGCTCCGATCGACACATATCATAAAGAGATTTTAC
CATCTGAAAACAAAACAGAAACCTGCAGGGCCCAAAAAAGAGCCTGGGTTCAAGAAAATGAGGT
TAAAAATGAGAAAAAAATCAGAACACATGATGGTGCACAAGATCAAGAGATTTTTGATCATTAT
ACTGAAGAGGACATCAATAAAAGTATTAACAATGTATTTCTAAAAAGCCTGAGCAGGACACCGT
CTAGTTCTAGCAGCTCTCTGGATTCAATCAAGGCTGATGGAATCTCTCTGGATGCCAGCACACA
GCGTAATAGCCAAATGGAATCACAGTTTCTTGGTGACACTATCTGTGAAGAGAGTTTGAGGGAG
AAACTGAAGGATGGACAAATTACAATCAAAGAGTTCTTCATACTTCTTCAAGTTCATATCTTAA
TACAGAAACCTAGGCAGAGCACTCTCCCAGCCAAATTTACTATAAACACATTACCTACCACAGA
AGATCTGATGTTGAGACAATATGTTTACGGACCCAAGATACAAATTTACAGAGAAGATTGTGAG
CTTCTTCGACAGAAGATTGAAGAATTGAAGGTATCTGCGTTGAACCAAGATAAACTATTGGTGG
ATGTAAATAGGAACTTGTGGGAAAAAATGAAAGACTACTCTGACGAAGAGCTGAAGACCTATGG
AATTTACCTTAACAAAATAAAATCACGTTATACCAAGATGACGAAAGTCTTCACTCACCAAGGA
AAAGTGGATCTGTATAGCAAATTGGTGCACTCAGCTGAGACTGAGAAGAGGAAACTTCAGATAA
AAATCAACGAGATGGACACCATACTTAAGAAGATCAATAACTGTCTCACTGCAGTGGAAATAGA
AACTAAGAATTTGGAGGCTGAAGAGAAAGATGATGCCATGGAAGATTGGGATTCTGAAATACGA
GATGCAGAGAAAGAACTGGAAAGGCTGAAAACTGAGGAAGAGGAGCTTCAAAGAAAGTTCTTAG
AAGTAGAGACACAGAAAACGCAGACCCTTGCTCAGATAGAATTTATAAAAGAACAAACAACTGA
AACAGAAGAATTATTGGATCAATTGAGTTTTTCTGAGTGGGATATCATCGAGTGGAGTGATGAA
CAAGCGGTATTTACCTTTGTTTATGATTCAATAGAACTTATCATCACTTTTGGAGAGCCTCAGG
TTGGTCTCCCTTTCTTGGACAAGGCTTACAGGACGATTAATGAACTCAGTTTTCAGTCTCTGTT
AGACGAAGATAAAGCGCCTCCTTCCTCCCTCTTGGTCCACAAGCTTATTTTCCAGTACATTGAA
GAGCAGGAGTTCTGGAAGAAGAAGTGCACAACACAGCATCAGGTGCCCCAGATGCTTCAAGAAC
TCTCATTGGTAGTTAACCATTGTAGGCTTCTTGGAGAAGAGATTGAATTTTTAAAGCGATGGGG
ACCAAATTATAGCCTAATGCATATAAATGTGAATAATACTGAATTACGGCTTCTATTCTCCAGT
TCTGCAGCATTTGCAAAGTTTGAGATAACTTTGTTTCCCTCGGCCCATTATCCCTTGGTCCCAC
TACCATTCACCATTCAAAATCACCTTGGGAAGACTGGCCATGATGAAATTGCTGCCGTTATCTC
TAAAGTGCCCTTAGAGGAAAACTACCTGAAGAATGTAGTCAAGCAGATTTACCAAGATCTACTT
AAGGACTGAAACTTTTGCCATAAACCACAGATCACAGCTATAACAACCAAGAAAAAAATATCCA
TTTACCCAGGCATAGAGGTGAACTCTTGAAATCTCAGGATTCCAGTAAGAGATGATCAAGGCCA
GCCTATGAGAACTGGTTGAAAAACAGAGTACTTAAATGGTACATCAGAGTCAATATTGATATTT
ACCCTTTGTCTTAATATCATATAAAACTAGCAAAATTCCTCCCCATGATGTCATAGTTAATTTG
TATCATTAGTTTTAAAATACCTAGTCAAAAATGATGAGGTCTCAAATAACATATTATCTACTTG
CTATTATACCTATAGGTTAAATGATCAGACGTGTGAAAATTTTCCCCTAAAGTAGCTTATTGAT
AGAACACTTATCTTGTGTGTATGAAGCCCTACATTTAATACCACAAAAAAAAATTTTTTTTTAA
GAAAGTCGAAAGTTGTGCTCTTGCCTTAATACAAGCTCTAAGAGTAACATTTATGAGGAAAGAT
TAGTAATTCCTCCTACCTGGAGCTGTGTATTTATGGTTTTTGCATAGCAGATCTATCTACAGTA
GAAACATTTCTATCAGTTTCTCCTAGTAGATACCTATAGCACAGCTACTCAGAAGACTGAAACG
GGGGGACCACATGACCTCATGCTTTAGGACCACTCAACGTAGTCAGTGGATTTGTCTCAAAACC
AAAAGAATATGTCTATTCACAAACTACTCATACTTCTCCATTTCAGAAAGCTGTTAAAGAAAGT
AGAAGCACTCAGCTATTGGAATGGTTGCCATATTTTCTTGAGAGTCTTGGTATTTTCTTTACAG
TGTTTATTAATGTTTTCTCTTTCTAATGTGTACTCTTTCCAGGAAAAGTTCACTAATTTTGGCC
TGATATATTAGTAAATATATGACTGGTTTTGTATTTGTGATGTATGTGATAATGAAATAGTATG
CCTTCAGTGCAGGTCATTTCCTTTTCTATAAAGAATGCTTTACAGCAAGATTTTCAATCTTTTT
TTTCTAGTGGAATTTAAACAATATCACATTGCATCACTAGTTTCTCACAATCATAAAAAACTTG
CTTTCTGAAACCACATTTTTCTCATATACAAAAACAATATATAGATTGTTTAATAAATTAACAG
TATTGTCTCTGAAGCAGAAAGTGTGAAGGACTTCCCCCACATACTTGTCAATTGTAATCACGCT
GACTTTGTTTACGCTTAATTCTAAACTGTGTTTACATTTTTTAAATTAATTTATCTTAAATTTT
TTCTTTTTATATCATGGTAAAGCCATTTAGTTCCACAAATGTTTTTATCTTATTTTTCTGCTAG
GTTGTACTTATGATCTATACATCAAAAGGTCACACACTCTGAAGGCTTTCAAAAGTCAACTCAA
AACCCTTTTGACTTAGAAAGTAAGCCAAAGTAGCCATAAAAAAACTTGTAAAGTCATCAGTATG
ATTTGCTTCCTATAAAATTTAATTCATCCTTCTGACGAATTTTTTTACCTATATATCTAAAAAT
TAGAGGTTTTCTTTTATTTTTTCTCTTAAACTTGAAAAAACTGCTCCAAGAATTTTTCTTATAA
TGGCTTATAATGGTTTTTTGGCTTTTGATAATGTAATTATGTTTATATAGGTGTTTGTGTTTTT
CAATGTTTATAGTTTTGACAACTTTCATAATTTCTAAGTTTTTCTTTTCATTTAAAGATTTTTT
TCATTATTAAAGTACATTCATTACGTGTAA

hide sequence

RefSeq Acc Id:

XM_008762095 ⟹ XP_008760317

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	126,483,498 - 126,545,774 (+)	NCBI
mRatBN7.2	3	106,029,627 - 106,091,915 (+)	NCBI
Rnor_6.0	3	110,847,538 - 110,909,807 (+)	NCBI

Sequence:

show sequence

TCTGGCGGTTAGATTTGAATACTTCACGGACAGTGGCGGGATGTTGTGAGGTGACGTCCAATGC
GGAGGAGCGCGCGGACCCCAGACAAGTCAAGCAGAAAAACGTTTTCAAAAATGGATGGGATATA
TTCAGAGGCTAATGAAGAGAATGACAATACACAGAGGCCTGTTAGAAGACAGCATTCCTCAATT
TTGAAACCCCCAAGGAGTCCTCTTCAGGACCTCAAATGTGGAAATGAAATAGTTCAGGAATCTA
ATGCTCCGAGAACCAGGAAAAGCTCTCGTCGGGTCAGCTTTGCAGATACTATAAAAGTATTCCA
GACAGAGTCCCATATGAAAACGGAAAAAAATTCAGAAATTTCAGAGACAGAAGCCAGAAAAAAT
GTGTTGACCCTACAGAACAAGAATTTAGATGATAACTATTGTGCAATTACTGGAATGAACACTT
TGCTTTGTGCTCCAATTCAGACTCAGATGCAACAAAAGGAGTTTTCAATTACAGACTGCAACCC
TGAAAGGAAACATGCAAATGATCAAACAGTCATCTTTTCAGATGAAAATCAGATGGATCTGACA
GCAAGTCACACGGTGATGATTGCCAAAGGTCTTGTAGACTGTACCAAACATGAAAATTCCACAA
AAATAGATACCACATCCTTTCTGGAGAATTTAAAGCATCGTGCTGCGAATTCAAGAGTTAAAAA
CGATTTAGCATGTCCAATAATTTCTATAAATCAAAACATTTTTTCAGAAAAGAAAAATTCTGAC
AACTTCATAAAAAGATTGAAAATGGGGAAATATAATACTTCTTCTACAGAACTTGATAAGGAAA
ATGCTGAAATACCTGTTCATTCCAAAGACTCAAACAGTGCCTCTTCCACGTGTCAAATACATGC
ATCGCTTAGTGTCGATGAACATAGTAGTAATAAGACTAGACTCTTTACAGAACAAGATGATGGG
ATGAATTTGACCCAGTGTCATACAGCCTGTATTCAGACTTGGATTCCTCCATCCAGGGAGGCCA
CCTTGGGAGAGGTTAAAGGTGATAATACAATTTATGGCAATGAGTGTATGGAGTTGACAACTAA
CTACACGATACAGGTGTTGTCATCAGAAAATAACTTACCTGAAAGAGAAAATCAAGCTCAAAAT
GATGTGATTGATGTTACAACAGTCGATGGAGCTACAGCTCCAGAGAAAAAAACAGCCCTTAAGG
ATAAACTAAATGCTGCTTTTCACAGCTCTTTCCCAAACCCTGAAAATAAACTTCATATTACCAA
ATGTCATCCTATAGAGTCAGAAACTCATACAGTCACACAGATTTCTAATCAAAATGCCAACACA
TTGGCTATGACCTCAGAATCTGTATGTTCTAGCCCAGCTATTCAAGGGTATAAAACAATTTTTT
ACTCTAGTAGCAATGATGCAATGGAACTGACTAAGTGTCTATCAATTATGCAAGAGGAAAAAAA
ATTGCTGAAGACTGATGATAAGTATTCTAAAATATGTACCAATTCAGATGCTAGCCCACTCAGA
GAGAAAACTATTTATTCAGAAGAGGATAGCATGGACATTACCAAAAGTCACACAGTTGCAATAG
ATAATAAGATATTTAAACATGATCAAGAAAACATTAAAAAAGAAATAACAGCTCTACCAATATT
TGAAAAAGAAATGATGCTCCAAAATCTTAAAACTATGTCCAAAGATGAGAAAATGAATGTGAAT
TCTATTACAGTTCCTCAAGTATCTAAAGAAAGTTTACAACAGAGTCTGACAAATGCCTTATCTA
TTTCATTGGCTGATAAAACAATGGAATTCTTAGCAGGTGAAGATATGGATTTGACTAAAAGTCA
CACAACTAAGTTAAGTCAAGTTATTCCTACAACTTTTGACTTAGCATCAAAGAATGTCACCAAA
TCTTCCTCTCACAGCAAAAGCCCTTCAGATGAGTGGGAAGGCCTGGAAAAACAAATTGTGCTAG
GCCAGCATTCTAAACTTCCTTCACCACAGAGGAAAGATTTAGATGATCCTGACTGTTCTCATCA
TAAGATAATGTATTCAGAGGAGGTACAAACTATGGATCTAACCAAGAGCCACACTATTGTGATT
GGGTTTGGTTCTTCTGAGGTACAAGAACACAGTAAGATTAATTTAGAACACAAAAGCAGCCAAC
TTACAGCAGAAAACAGACAAACAGCTGTGAACATTCCTGGAATAAACTTTAGAGTAGTAACAAC
TAATGATATGGACATGTTAAAGGACAGAAGTATACATAAGCCAGAATTGCTGGAGGAAAAGCAA
AACGTCAAAATTTATGGAAGAAAAAGTATGGGTGGACTGAAGATTGATAAAACTATATTATTTT
CAGAGGGTAATGAGGATGATATGGATATCACTAAGAGTTGCACAGTCAAAATAAACCATCGGTC
TTTATTAGATAAACATGATTCTCATTTAGTATCTTTGGCAGGAACTTCTAAAACCATTTTGCAT
GCACGTGGACAGGATGAAATGGAAATTAATAGAAATCACACGACTCCTTTAGAGTGTAAAATTA
TCTCACCCAGTGATATAACTTCTGGTGATCTGAGTAAGACTGTGATGTCTATAGATGATCATGA
GGAACTAGAAATGACTAAGTCCCATACTGTTTTCATTGACTACCAAGCAGAGGCAAAAGGTGTA
CTTCCAGACAGACTTGACTTTCAATTATCCAAAAAGAAAAGCCTACAGAAGCCAAAAATGACAT
CTACTCATGCTGAAGAGATTGTTTCCATTTCAAAAAATAGTGAAAGCAACTATCTACCAGCCAA
AGGCAGCCAGGTAACAATATTAGAGGAAGGATCTAATAGTGGGCCTGGGGAAGAAACTAATGAT
GCACAAAAGCCTGGATTTCTGAATGAACCTCTGTCAGGCAAAACTCAAAGAAGAGAAAGCCTTA
AGCTCAAAAATAAGACTATTACATTTTCAGGAAATGATAAAAGTAATAGAGATATCACTCAGAG
TTCTGTGGTAGAAATAAATAATGAAACTAACCTGGAAGATAGAAAGGGCTTCAGTTTTGTGCCA
TTGGCAGGAACTTCCAAGCCAGTTTTATCTGCATATCGGCCAGAGGACATGGAGATCTCTATAA
GTCAAACCTCTGCTTCGGAGTATAAAACTATCCCACCAGATGAAATGACTACTATACCTATGGA
TAAAACTGTAATGTTTGTAGATAATCTCAGTGATCTGGGTGTCACCAGATCCCATACGTTTTTC
ATCGATTGTCAAGCCAAAGAGAAAGTACTTCATGAATATACCAACTTGGGAATACCAAAACCAC
AAAACTTGAGTGGTTCTGAAGATAATTCCTGTATTCAAGAAATCACCAAAAAACCAGTAGCTGA
ATACAAACACCATATGACAACTGTTATTCCTTCTAATACATTATTTAGTGATCAAAGTACAATG
AAAATCAAGATGCATAAAGCTGATATAGATGAAGAGGGCATAGGAAAGGAAGTGGAGGCCGATA
CATTGAAACAAACTAAACTTGAAAGGTGTCTGTTAAATAGAACTGATGGAAAAAATGTGGATTT
TACAAGTAGTCATATAGCTGATGTTTGTACATCCAGAGACAAGTATTCCTCTTTACCAAATGTT
ATTTCTTCTTCTGATAATTTAGATAGTAATACTAAGTCCTTGTGTGATAAAAGTAGGGAGAAAG
CTTATAATTGCCAAGTGCCAAATGAGTTTACTTTTGCAGATAATTTACCAAGTAGATATCACCT
GGATTCTGAAATACCATCTGTCTTTGTATCATGTCCTTCAAAAGAAGTTACTCAAACTGAAAGT
GCCATAGCACTACTTCAAGATCAAGATCAAGAGCCTCTGGGACTCTCAAAGTGTGCATCTCTTA
AGTGTGCAAAGGATCAAATGGAGGCCTTTGTTGATGTTAGTGTTGCTTCTCAGCCTCATCTCTC
AGCCCAACAACCTCCATCAACTCAAAAAGGGCAGGATGCCGCCAATAGAGATGAAGGAATGCTA
TCTAAAGCTGGGAAGAAGACTTTACCTTTTCTTATAGGAAATGTCTCTGCACCCACATGTGAAA
ATGCGTCCAAAATGCCTACTAATGAGGAACACTTTGCTGTAACCTATAACAAAGAACTGGAAAA
AAGTATTCAAACAGATAAATGTAATACAAATGTACACAACCATAGTAACTCAGTCCTGACAACA
CAAGTCATTCAAACACATGCCAGTGCCGAAGCAGCATCAGACTCTATAGTTCCATCTAATGGTT
CCTGTTTTAGTAGTGCCAAACCAAGTCTGAGTAATTTGAATAGAAAAACTGGGAAGGTTTTAGA
CTTTAATACTGTTCATATATTACCTCCTGCAGAACAGTTACTTGAAGCAGGAAATCAGGCACAT
AGTATGAGTATAGTACAAGGTACAGAAATACATAGCCTAGGTTCCAGCAATGACAGAGATAAAG
AAAGTAAAACTCTGCATAATGAGGCCGAAGCTACATCTGTACCACTAAAAGCAGTTGTTAAAGA
CAAAGCAAGAAGATGTTCATTGGGAATATTTTTACCCAAATTACCAAACAAGAAAAGTTGTAGT
ATCACTGGTGTTGATGATGTGGAACAGATTCTAGCAGATGCAACTGACTTAACTCACCTAGAAA
CTCAGCCAGTCTGTAGTCAAGATCCGGGCATTGGCTCTGTTGCAGCCAAACTGAACTTGAGTCC
ATCTCAGTATATAAATGAGGAGAATCTCCCTGTATATCCCGGTGAGATACTTTCATCAGATTCT
GTCATCCTGGACATTGAGGAAAGTGCTCCGATCGACACATATCATAAAGAGATTTTACCATCTG
AAAACAAAACAGAAACCTGCAGGGCCCAAAAAAGAGCCTGGGTTCAAGAAAATGAGGTTAAAAA
TGAGAAAAAAATCAGAACACATGATGGTGCACAAGATCAAGAGATTTTTGATCATTATACTGAA
GAGGACATCAATAAAAGTATTAACAATGTATTTCTAAAAAGCCTGAGCAGGACACCGTCTAGTT
CTAGCAGCTCTCTGGATTCAATCAAGGCTGATGGAATCTCTCTGGATGCCAGCACACAGCGTAA
TAGCCAAATGGAATCACAGTTTCTTGGTGACACTATCTGTGAAGAGAGTTTGAGGGAGAAACTG
AAGGATGGACAAATTACAATCAAAGAGTTCTTCATACTTCTTCAAGTTCATATCTTAATACAGA
AACCTAGGCAGAGCACTCTCCCAGCCAAATTTACTATAAACACATTACCTACCACAGAAGATCT
GATGTTGAGACAATATGTTTACGGACCCAAGATACAAATTTACAGAGAAGATTGTGAGCTTCTT
CGACAGAAGATTGAAGAATTGAAGGTATCTGCGTTGAACCAAGATAAACTATTGGTGGATGTAA
ATAGGAACTTGTGGGAAAAAATGAAAGACTACTCTGACGAAGAGCTGAAGACCTATGGAATTTA
CCTTAACAAAATAAAATCACGTTATACCAAGATGACGAAAGTCTTCACTCACCAAGGAAAAGTG
GATCTGTATAGCAAATTGGTGCACTCAGCTGAGACTGAGAAGAGGAAACTTCAGATAAAAATCA
ACGAGATGGACACCATACTTAAGAAGATCAATAACTGTCTCACTGCAGTGGAAATAGAAACTAA
GAATTTGGAGGCTGAAGAGAAAGATGATGCCATGGAAGATTGGGATTCTGAAATACGAGATGCA
GAGAAAGAACTGGAAAGGCTGAAAACTGAGGAAGAGGAGCTTCAAAGAAAGTTCTTAGAAGTAG
AGACACAGAAAACGCAGACCCTTGCTCAGATAGAATTTATAAAAGAACAAACAACTGAAACAGA
AGAATTATTGGATCAATTGAGTTTTTCTGAGTGGGATATCATCGAGTGGAGTGATGAACAAGCG
GTATTTACCTTTGTTTATGATTCAATAGAACTTATCATCACTTTTGGAGAGCCTCAGGTTGGTC
TCCCTTTCTTGGACAAGGCTTACAGGACGATTAATGAACTCAGTTTTCAGTCTCTGTTAGACGA
AGATAAAGCGCCTCCTTCCTCCCTCTTGGTCCACAAGCTTATTTTCCAGTACATTGAAGAGCAG
GAGTTCTGGAAGAAGAAGTGCACAACACAGCATCAGGTGCCCCAGATGCTTCAAGAACTCTCAT
TGGTAGTTAACCATTGTAGGCTTCTTGGAGAAGAGATTGAATTTTTAAAGCGATGGGGACCAAA
TTATAGCCTAATGCATATAAATGTGAATAATACTGAATTACGGCTTCTATTCTCCAGTTCTGCA
GCATTTGCAAAGTTTGAGATAACTTTGTTTCCCTCGGCCCATTATCCCTTGGTCCCACTACCAT
TCACCATTCAAAATCACCTTGGGAAGACTGGCCATGATGAAATTGCTGCCGTTATCTCTAAAGT
GCCCTTAGAGGAAAACTACCTGAAGAATGTAGTCAAGCAGATTTACCAAGATCTACTTAAGGAC
TGAAACTTTTGCCATAAACCACAGATCACAGCTATAACAACCAAGAAAAAAATATCCATTTACC
CAGGCATAGAGGTGAACTCTTGAAATCTCAGGATTCCAGTAAGAGATGATCAAGGCCAGCCTAT
GAGAACTGGTTGAAAAACAGAGTACTTAAATGGTACATCAGAGTCAATATTGATATTTACCCTT
TGTCTTAATATCATATAAAACTAGCAAAATTCCTCCCCATGATGTCATAGTTAATTTGTATCAT
TAGTTTTAAAATACCTAGTCAAAAATGATGAGGTCTCAAATAACATATTATCTACTTGCTATTA
TACCTATAGGTTAAATGATCAGACGTGTGAAAATTTTCCCCTAAAGTAGCTTATTGATAGAACA
CTTATCTTGTGTGTATGAAGCCCTACATTTAATACCACAAAAAAAAATTTTTTTTTAAGAAAGT
CGAAAGTTGTGCTCTTGCCTTAATACAAGCTCTAAGAGTAACATTTATGAGGAAAGATTAGTAA
TTCCTCCTACCTGGAGCTGTGTATTTATGGTTTTTGCATAGCAGATCTATCTACAGTAGAAACA
TTTCTATCAGTTTCTCCTAGTAGATACCTATAGCACAGCTACTCAGAAGACTGAAACGGGGGGA
CCACATGACCTCATGCTTTAGGACCACTCAACGTAGTCAGTGGATTTGTCTCAAAACCAAAAGA
ATATGTCTATTCACAAACTACTCATACTTCTCCATTTCAGAAAGCTGTTAAAGAAAGTAGAAGC
ACTCAGCTATTGGAATGGTTGCCATATTTTCTTGAGAGTCTTGGTATTTTCTTTACAGTGTTTA
TTAATGTTTTCTCTTTCTAATGTGTACTCTTTCCAGGAAAAGTTCACTAATTTTGGCCTGATAT
ATTAGTAAATATATGACTGGTTTTGTATTTGTGATGTATGTGATAATGAAATAGTATGCCTTCA
GTGCAGGTCATTTCCTTTTCTATAAAGAATGCTTTACAGCAAGATTTTCAATCTTTTTTTTCTA
GTGGAATTTAAACAATATCACATTGCATCACTAGTTTCTCACAATCATAAAAAACTTGCTTTCT
GAAACCACATTTTTCTCATATACAAAAACAATATATAGATTGTTTAATAAATTAACAGTATTGT
CTCTGAAGCAGAAAGTGTGAAGGACTTCCCCCACATACTTGTCAATTGTAATCACGCTGACTTT
GTTTACGCTTAATTCTAAACTGTGTTTACATTTTTTAAATTAATTTATCTTAAATTTTTTCTTT
TTATATCATGGTAAAGCCATTTAGTTCCACAAATGTTTTTATCTTATTTTTCTGCTAGGTTGTA
CTTATGATCTATACATCAAAAGGTCACACACTCTGAAGGCTTTCAAAAGTCAACTCAAAACCCT
TTTGACTTAGAAAGTAAGCCAAAGTAGCCATAAAAAAACTTGTAAAGTCATCAGTATGATTTGC
TTCCTATAAAATTTAATTCATCCTTCTGACGAATTTTTTTACCTATATATCTAAAAATTAGAGG
TTTTCTTTTATTTTTTCTCTTAAACTTGAAAAAACTGCTCCAAGAATTTTTCTTATAATGGCTT
ATAATGGTTTTTTGGCTTTTGATAATGTAATTATGTTTATATAGGTGTTTGTGTTTTTCAATGT
TTATAGTTTTGACAACTTTCATAATTTCTAAGTTTTTCTTTTCATTTAAAGATTTTTTTCATTA
TTAAAGTACATTCATTACGTGTAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001164065	(Get FASTA)	NCBI Sequence Viewer
	XP_008760317	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000050682.5
	ENSRNOP00000075477.1
	ENSRNOP00000087241.1

RefSeq Acc Id:

NP_001164065 ⟸ NM_001170594

- UniProtKB:

D3ZNX2 (UniProtKB/TrEMBL), A0A8I6A5F3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDGIYSEANEENDNTQRPVRRQHSSILKPPRSPLQDLKCGNEIVQESNAPRTRKSSRRVSFADT
IKVFQTESHMKTEKNSEISGMNTLLCAPIQTQMQQKEFSITDCNPERKHANDQTVIFSDENQMD
LTASHTVMIAKGLVDCTKHENSTKIDTTSFLENLKHRAANSRVKNDLACPIISINQNIFSEKKN
SDNFIKRLKMGKYNTSSTELDKENAEIPVHSKDSNSASSTCQIHASLSVDEHSSNKTRLFTEQD
DGMNLTQCHTACIQTWIPPSREATLGEVKGDNTIYGNECMELTTNYTIQVLSSENNLPERENQA
QNDVIDVTTVDGATAPEKKTALKDKLNAAFHSSFPNPENKLHITKCHPIESETHTVTQISNQNA
NTLAMTSESVCSSPAIQGYKTIFYSSSNDAMELTKCLSIMQEEKKLLKTDDKYSKICTNSDASP
LREKTIYSEEDSMDITKSHTVAIDNKIFKHDQENIKKEITALPIFEKEMMLQNLKTMSKDEKMN
VNSITVPQVSKESLQQSLTNALSISLADKTMEFLAGEDMDLTKSHTTKLSQVIPTTFDLASKNV
TKSSSHSKSPSDEWEGLEKQIVLGQHSKLPSPQRKDLDDPDCSHHKIMYSEEVQTMDLTKSHTI
VIGFGSSEVQEHSKINLEHKSSQLTAENRQTAVNIPGINFRVVTTNDMDMLKDRSIHKPELLEE
KQNVKIYGRKSMGGLKIDKTILFSEGNEDDMDITKSCTVKINHRSLLDKHDSHLVSLAGTSKTI
LHARGQDEMEINRNHTTPLECKIISPSDITSGDLSKTVMSIDDHEELEMTKSHTVFIDYQAEAK
GVLPDRLDFQLSKKKSLQKPKMTSTHAEEIVSISKNSESNYLPAKGSQVTILEEGSNSGPGEET
NDAQKPGFLNEPLSGKTQRRESLKLKNKTITFSGNDKSNRDITQSSVVEINNETNLEDRKGFSF
VPLAGTSKPVLSAYRPEDMEISISQTSASEYKTIPPDEMTTIPMDKTVMFVDNLSDLGVTRSHT
FFIDCQAKEKVLHEYTNLGIPKPQNLSGSEDNSCIQEITKKPVAEYKHHMTTVIPSNTLFSDQS
TMKIKMHKADIDEEGIGKEVEADTLKQTKLERCLLNRTDGKNVDFTSSHIADVCTSRDKYSSLP
NVISSSDNLDSNTKSLCDKSREKAYNCQVPNEFTFADNLPSRYHLDSEIPSVFVSCPSKEVTQT
ESAIALLQDQDQEPLGLSKCASLKCAKDQMEAFVDVSVASQPHLSAQQPPSTQKGQDAANRDEG
MLSKAGKKTLPFLIGNVSAPTCENASKMPTNEEHFAVTYNKELEKSIQTDKCNTNVHNHSNSVL
TTQVIQTHASAEAASDSIVPSNGSCFSSAKPSLSNLNRKTGKVLDFNTVHILPPAEQLLEAGNQ
AHSMSIVQGTEIHSLGSSNDRDKESKTLHNEAEATSVPLKAVVKDKARRCSLGIFLPKLPNKKS
CSITGVDDVEQILADATDLTHLETQPVCSQDPGIGSVAAKLNLSPSQYINEENLPVYPGEILSS
DSVILDIEESAPIDTYHKEILPSENKTETCRAQKRAWVQENEVKNEKKIRTHDGAQDQEIFDHY
TEEDINKSINNVFLKSLSRTPSSSSSSLDSIKADGISLDASTQRNSQMESQFLGDTICEESLRE
KLKDGQITIKEFFILLQVHILIQKPRQSTLPAKFTINTLPTTEDLMLRQYVYGPKIQIYREDCE
LLRQKIEELKVSALNQDKLLVDVNRNLWEKMKDYSDEELKTYGIYLNKIKSRYTKMTKVFTHQG
KVDLYSKLVHSAETEKRKLQIKINEMDTILKKINNCLTAVEIETKNLEAEEKDDAMEDWDSEIR
DAEKELERLKTEEEELQRKFLEVETQKTQTLAQIEFIKEQTTETEELLDQLSFSEWDIIEWSDE
QAVFTFVYDSIELIITFGEPQVGLPFLDKAYRTINELSFQSLLDEDKAPPSSLLVHKLIFQYIE
EQEFWKKKCTTQHQVPQMLQELSLVVNHCRLLGEEIEFLKRWGPNYSLMHINVNNTELRLLFSS
SAAFAKFEITLFPSAHYPLVPLPFTIQNHLGKTGHDEIAAVISKVPLEENYLKNVVKQIYQDLL
KD

hide sequence

RefSeq Acc Id:	XP_008760317 ⟸ XM_008762095
- Peptide Label:	isoform X1
- UniProtKB:	D3Z896 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRRSARTPDKSSRKTFSKMDGIYSEANEENDNTQRPVRRQHSSILKPPRSPLQDLKCGNEIVQE SNAPRTRKSSRRVSFADTIKVFQTESHMKTEKNSEISETEARKNVLTLQNKNLDDNYCAITGMN TLLCAPIQTQMQQKEFSITDCNPERKHANDQTVIFSDENQMDLTASHTVMIAKGLVDCTKHENS TKIDTTSFLENLKHRAANSRVKNDLACPIISINQNIFSEKKNSDNFIKRLKMGKYNTSSTELDK ENAEIPVHSKDSNSASSTCQIHASLSVDEHSSNKTRLFTEQDDGMNLTQCHTACIQTWIPPSRE ATLGEVKGDNTIYGNECMELTTNYTIQVLSSENNLPERENQAQNDVIDVTTVDGATAPEKKTAL KDKLNAAFHSSFPNPENKLHITKCHPIESETHTVTQISNQNANTLAMTSESVCSSPAIQGYKTI FYSSSNDAMELTKCLSIMQEEKKLLKTDDKYSKICTNSDASPLREKTIYSEEDSMDITKSHTVA IDNKIFKHDQENIKKEITALPIFEKEMMLQNLKTMSKDEKMNVNSITVPQVSKESLQQSLTNAL SISLADKTMEFLAGEDMDLTKSHTTKLSQVIPTTFDLASKNVTKSSSHSKSPSDEWEGLEKQIV LGQHSKLPSPQRKDLDDPDCSHHKIMYSEEVQTMDLTKSHTIVIGFGSSEVQEHSKINLEHKSS QLTAENRQTAVNIPGINFRVVTTNDMDMLKDRSIHKPELLEEKQNVKIYGRKSMGGLKIDKTIL FSEGNEDDMDITKSCTVKINHRSLLDKHDSHLVSLAGTSKTILHARGQDEMEINRNHTTPLECK IISPSDITSGDLSKTVMSIDDHEELEMTKSHTVFIDYQAEAKGVLPDRLDFQLSKKKSLQKPKM TSTHAEEIVSISKNSESNYLPAKGSQVTILEEGSNSGPGEETNDAQKPGFLNEPLSGKTQRRES LKLKNKTITFSGNDKSNRDITQSSVVEINNETNLEDRKGFSFVPLAGTSKPVLSAYRPEDMEIS ISQTSASEYKTIPPDEMTTIPMDKTVMFVDNLSDLGVTRSHTFFIDCQAKEKVLHEYTNLGIPK PQNLSGSEDNSCIQEITKKPVAEYKHHMTTVIPSNTLFSDQSTMKIKMHKADIDEEGIGKEVEA DTLKQTKLERCLLNRTDGKNVDFTSSHIADVCTSRDKYSSLPNVISSSDNLDSNTKSLCDKSRE KAYNCQVPNEFTFADNLPSRYHLDSEIPSVFVSCPSKEVTQTESAIALLQDQDQEPLGLSKCAS LKCAKDQMEAFVDVSVASQPHLSAQQPPSTQKGQDAANRDEGMLSKAGKKTLPFLIGNVSAPTC ENASKMPTNEEHFAVTYNKELEKSIQTDKCNTNVHNHSNSVLTTQVIQTHASAEAASDSIVPSN GSCFSSAKPSLSNLNRKTGKVLDFNTVHILPPAEQLLEAGNQAHSMSIVQGTEIHSLGSSNDRD KESKTLHNEAEATSVPLKAVVKDKARRCSLGIFLPKLPNKKSCSITGVDDVEQILADATDLTHL ETQPVCSQDPGIGSVAAKLNLSPSQYINEENLPVYPGEILSSDSVILDIEESAPIDTYHKEILP SENKTETCRAQKRAWVQENEVKNEKKIRTHDGAQDQEIFDHYTEEDINKSINNVFLKSLSRTPS SSSSSLDSIKADGISLDASTQRNSQMESQFLGDTICEESLREKLKDGQITIKEFFILLQVHILI QKPRQSTLPAKFTINTLPTTEDLMLRQYVYGPKIQIYREDCELLRQKIEELKVSALNQDKLLVD VNRNLWEKMKDYSDEELKTYGIYLNKIKSRYTKMTKVFTHQGKVDLYSKLVHSAETEKRKLQIK INEMDTILKKINNCLTAVEIETKNLEAEEKDDAMEDWDSEIRDAEKELERLKTEEEELQRKFLE VETQKTQTLAQIEFIKEQTTETEELLDQLSFSEWDIIEWSDEQAVFTFVYDSIELIITFGEPQV GLPFLDKAYRTINELSFQSLLDEDKAPPSSLLVHKLIFQYIEEQEFWKKKCTTQHQVPQMLQEL SLVVNHCRLLGEEIEFLKRWGPNYSLMHINVNNTELRLLFSSSAAFAKFEITLFPSAHYPLVPL PFTIQNHLGKTGHDEIAAVISKVPLEENYLKNVVKQIYQDLLKD hide sequence

Ensembl Acc Id:

ENSRNOP00000075477 ⟸ ENSRNOT00000081613

Ensembl Acc Id:

ENSRNOP00000050682 ⟸ ENSRNOT00000041727

Ensembl Acc Id:

ENSRNOP00000087241 ⟸ ENSRNOT00000102895

Protein Domains

Knl1 C-terminal RWD

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3Z896-F1-model_v2	AlphaFold	D3Z896	1-1631	view protein structure
AF-D3ZNX2-F1-model_v2	AlphaFold	D3ZNX2	1-2114	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307498	AgrOrtholog
BioCyc Gene	G2FUF-48221	BioCyc
Ensembl Genes	ENSRNOG00000026378	Ensembl
	ENSRNOG00000060100	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000041727.5	UniProtKB/TrEMBL
	ENSRNOT00000081613.2	UniProtKB/TrEMBL
	ENSRNOT00000102895.1	UniProtKB/TrEMBL
InterPro	Blinkin	UniProtKB/TrEMBL
	KNL1_MELT_rep	UniProtKB/TrEMBL
	Knl1_RWD_C	UniProtKB/TrEMBL
KEGG Report	rno:311327	UniProtKB/TrEMBL
NCBI Gene	311327	ENTREZGENE
PANTHER	KINETOCHORE SCAFFOLD 1	UniProtKB/TrEMBL
	PTHR16520	UniProtKB/TrEMBL
Pfam	Knl1_RWD_C	UniProtKB/TrEMBL
	MELT	UniProtKB/TrEMBL
PhenoGen	Knl1	PhenoGen
RatGTEx	ENSRNOG00000026378	RatGTEx
	ENSRNOG00000060100	RatGTEx
UniProt	A0A8I6A5F3	ENTREZGENE, UniProtKB/TrEMBL
	D3Z896	ENTREZGENE, UniProtKB/TrEMBL
	D3ZNX2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Knl1	kinetochore scaffold 1	LOC100911204	protein CASC5-like	Data merged from RGD:6494213	737654	PROVISIONAL
2016-06-22	Knl1	kinetochore scaffold 1	Casc5	cancer susceptibility candidate 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-29	Casc5	cancer susceptibility candidate 5	LOC102549359	uncharacterized LOC102549359	Data merged from RGD:7602599	737654	PROVISIONAL
2013-12-18	LOC102549359	uncharacterized LOC102549359			Symbol and Name status set to provisional	70820	PROVISIONAL
2012-07-05	LOC100911204	protein CASC5-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-03-04	Casc5	cancer susceptibility candidate 5	Rad51_predicted	RAD51 homolog (S. cerevisiae) (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Rad51_predicted	RAD51 homolog (S. cerevisiae) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM