Banp (Btg3 associated nuclear protein) - Rat Genome Database
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Gene: Banp (Btg3 associated nuclear protein) Rattus norvegicus
Analyze
Symbol: Banp
Name: Btg3 associated nuclear protein
RGD ID: 1307464
Description: Predicted to have identical protein binding activity and p53 binding activity. Predicted to be involved in negative regulation of protein catabolic process; positive regulation of transcription, DNA-templated; and protein localization to nucleus. Predicted to localize to nuclear body. Orthologous to human BANP (BTG3 associated nuclear protein); INTERACTS WITH 1,3,5-trinitro-1,3,5-triazinane; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC292064
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01954,766,441 - 54,843,795 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1954,766,589 - 54,840,569 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01965,485,716 - 65,562,982 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41952,193,660 - 52,268,521 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11952,198,537 - 52,273,415 (+)NCBI
Celera1949,252,953 - 49,326,380 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nuclear body  (IEA,ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

Additional References at PubMed
PMID:10940556   PMID:12477932   PMID:22978699   PMID:26871637  


Genomics

Comparative Map Data
Banp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01954,766,441 - 54,843,795 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1954,766,589 - 54,840,569 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01965,485,716 - 65,562,982 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41952,193,660 - 52,268,521 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11952,198,537 - 52,273,415 (+)NCBI
Celera1949,252,953 - 49,326,380 (+)NCBICelera
Cytogenetic Map19q12NCBI
BANP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1687,949,244 - 88,077,318 (+)EnsemblGRCh38hg38GRCh38
GRCh381687,949,216 - 88,077,318 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371687,984,231 - 88,110,924 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361686,542,539 - 86,668,425 (+)NCBINCBI36hg18NCBI36
Celera1672,282,252 - 72,401,419 (+)NCBI
Cytogenetic Map16q24.2NCBI
HuRef1673,724,801 - 73,847,588 (+)NCBIHuRef
CHM1_11689,396,680 - 89,522,461 (+)NCBICHM1_1
Banp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398122,674,711 - 122,755,999 (+)NCBIGRCm39mm39
GRCm388121,947,972 - 122,029,260 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8121,949,750 - 122,029,258 (+)EnsemblGRCm38mm10GRCm38
MGSCv378124,474,433 - 124,553,158 (+)NCBIGRCm37mm9NCBIm37
MGSCv368124,836,670 - 124,912,027 (+)NCBImm8
Celera8126,178,193 - 126,256,492 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map870.82NCBI
Banp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555412,169,303 - 2,256,779 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555412,169,303 - 2,256,779 (+)NCBIChiLan1.0ChiLan1.0
BANP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11688,349,434 - 88,448,489 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01668,626,638 - 68,753,293 (+)NCBIMhudiblu_PPA_v0panPan3
BANP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl565,152,247 - 65,256,667 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1565,151,863 - 65,256,782 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Banp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366411,386,592 - 1,472,750 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BANP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl61,421,461 - 1,495,487 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.161,421,460 - 1,495,484 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.261,560,880 - 1,595,741 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103233436
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1573,341,241 - 73,466,636 (+)NCBI
ChlSab1.1 Ensembl573,341,729 - 73,466,949 (+)Ensembl
Banp
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247461,205,212 - 1,287,108 (-)NCBI

Position Markers
BF399372  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01954,840,093 - 54,840,306NCBIRnor6.0
Rnor_5.01965,559,281 - 65,559,494UniSTSRnor5.0
RGSC_v3.41952,268,028 - 52,268,241UniSTSRGSC3.4
Celera1949,325,887 - 49,326,100UniSTS
Cytogenetic Map19q12UniSTS
RH 3.4 Map19698.1UniSTS
RH135281  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01954,814,060 - 54,814,266NCBIRnor6.0
Rnor_5.01965,533,306 - 65,533,512UniSTSRnor5.0
RGSC_v3.41952,241,134 - 52,241,340UniSTSRGSC3.4
Celera1949,300,393 - 49,300,599UniSTS
Cytogenetic Map19q12UniSTS
RH 3.4 Map19697.4UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19243296362275575Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19650676160220581Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191899398262275575Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191917749562275575Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)192140778762275575Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192481825762275575Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)193299439262275575Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193791679960220451Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193791679960220451Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194883071260220581Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)195473521758072143Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:39
Interacting mature miRNAs:45
Transcripts:ENSRNOT00000025894
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 23 30 14 19 14 3 74 27 35 11
Low 20 27 27 27 8 8 8 6 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AABR07044065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07072658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01099019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC109048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC160844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000025894   ⟹   ENSRNOP00000025894
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1954,766,589 - 54,840,569 (+)Ensembl
RefSeq Acc Id: NM_001106191   ⟹   NP_001099661
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01954,766,595 - 54,840,586 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
RGSC_v3.41952,193,660 - 52,268,521 (+)RGD
Celera1949,252,953 - 49,326,380 (+)RGD
Sequence:
RefSeq Acc Id: XM_006255751   ⟹   XP_006255813
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01954,766,589 - 54,843,794 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255752   ⟹   XP_006255814
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01954,766,589 - 54,843,794 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255753   ⟹   XP_006255815
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01954,766,609 - 54,843,794 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255754   ⟹   XP_006255816
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01954,766,609 - 54,843,794 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255756   ⟹   XP_006255818
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01954,766,589 - 54,843,795 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255757   ⟹   XP_006255819
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01954,766,609 - 54,843,795 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008772601   ⟹   XP_008770823
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01954,766,701 - 54,843,794 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601240   ⟹   XP_017456729
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01954,766,441 - 54,843,794 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601241   ⟹   XP_017456730
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01954,766,441 - 54,843,794 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601242   ⟹   XP_017456731
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01954,766,441 - 54,843,794 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601243   ⟹   XP_017456732
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01954,766,441 - 54,843,795 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601244   ⟹   XP_017456733
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01954,766,441 - 54,843,795 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001099661   ⟸   NM_001106191
- UniProtKB: B1H235 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255813   ⟸   XM_006255751
- Peptide Label: isoform X6
- UniProtKB: B1H235 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255814   ⟸   XM_006255752
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006255818   ⟸   XM_006255756
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006255815   ⟸   XM_006255753
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006255816   ⟸   XM_006255754
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006255819   ⟸   XM_006255757
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_008770823   ⟸   XM_008772601
- Peptide Label: isoform X6
- UniProtKB: B1H235 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456732   ⟸   XM_017601243
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017456733   ⟸   XM_017601244
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017456729   ⟸   XM_017601240
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017456730   ⟸   XM_017601241
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017456731   ⟸   XM_017601242
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000025894   ⟸   ENSRNOT00000025894
Protein Domains
BEN

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701203
Promoter ID:EPDNEW_R11725
Type:initiation region
Name:Banp_1
Description:Btg3 associated nuclear protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01954,766,612 - 54,766,672EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307464 AgrOrtholog
Ensembl Genes ENSRNOG00000019140 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000025894 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025894 ENTREZGENE, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8361869 IMAGE-MGC_LOAD
InterPro BANP UniProtKB/TrEMBL
  BEN_domain UniProtKB/TrEMBL
KEGG Report rno:292064 UniProtKB/TrEMBL
MGC_CLONE MGC:187571 IMAGE-MGC_LOAD
NCBI Gene 292064 ENTREZGENE
PANTHER PTHR16243 UniProtKB/TrEMBL
Pfam BEN UniProtKB/TrEMBL
PhenoGen Banp PhenoGen
PROSITE BEN UniProtKB/TrEMBL
SMART BEN UniProtKB/TrEMBL
UniGene Rn.55281 ENTREZGENE
UniProt B1H235 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Banp  Btg3 associated nuclear protein   Banp_predicted  Btg3 associated nuclear protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Banp_predicted  Btg3 associated nuclear protein (predicted)      Symbol and Name status set to approved 70820 APPROVED