Banp (Btg3 associated nuclear protein) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Banp (Btg3 associated nuclear protein) Rattus norvegicus
Analyze
Symbol: Banp
Name: Btg3 associated nuclear protein
RGD ID: 1307464
Description: Predicted to enable identical protein binding activity and p53 binding activity. Predicted to be involved in negative regulation of protein catabolic process; positive regulation of DNA-templated transcription; and protein localization to nucleus. Predicted to be located in nuclear body. Orthologous to human BANP (BTG3 associated nuclear protein); INTERACTS WITH 1,3,5-trinitro-1,3,5-triazinane; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC292064
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21950,007,710 - 50,082,742 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1950,007,881 - 50,082,738 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1956,800,151 - 56,875,047 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01957,482,809 - 57,557,430 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01959,698,744 - 59,773,640 (+)NCBIRnor_WKY
Rnor_6.01954,766,441 - 54,843,795 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1954,766,589 - 54,840,569 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01965,485,716 - 65,562,982 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41952,193,660 - 52,268,521 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11952,198,537 - 52,273,415 (+)NCBI
Celera1949,252,953 - 49,326,380 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nuclear body  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10940556   PMID:12477932   PMID:22978699   PMID:26871637  


Genomics

Comparative Map Data
Banp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21950,007,710 - 50,082,742 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1950,007,881 - 50,082,738 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1956,800,151 - 56,875,047 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01957,482,809 - 57,557,430 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01959,698,744 - 59,773,640 (+)NCBIRnor_WKY
Rnor_6.01954,766,441 - 54,843,795 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1954,766,589 - 54,840,569 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01965,485,716 - 65,562,982 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41952,193,660 - 52,268,521 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11952,198,537 - 52,273,415 (+)NCBI
Celera1949,252,953 - 49,326,380 (+)NCBICelera
Cytogenetic Map19q12NCBI
BANP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381687,949,238 - 88,077,318 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1687,949,244 - 88,077,318 (+)EnsemblGRCh38hg38GRCh38
GRCh371687,982,844 - 88,110,924 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361686,542,539 - 86,668,425 (+)NCBINCBI36Build 36hg18NCBI36
Celera1672,282,252 - 72,401,419 (+)NCBICelera
Cytogenetic Map16q24.2NCBI
HuRef1673,724,801 - 73,847,588 (+)NCBIHuRef
CHM1_11689,396,680 - 89,522,461 (+)NCBICHM1_1
T2T-CHM13v2.01694,021,837 - 94,148,506 (+)NCBIT2T-CHM13v2.0
Banp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398122,674,711 - 122,755,999 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8122,676,489 - 122,755,997 (+)EnsemblGRCm39 Ensembl
GRCm388121,947,972 - 122,029,260 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8121,949,750 - 122,029,258 (+)EnsemblGRCm38mm10GRCm38
MGSCv378124,474,433 - 124,553,158 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368124,836,670 - 124,912,027 (+)NCBIMGSCv36mm8
Celera8126,178,193 - 126,256,492 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map870.82NCBI
Banp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555412,169,303 - 2,256,779 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555412,169,303 - 2,256,779 (+)NCBIChiLan1.0ChiLan1.0
BANP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11688,349,434 - 88,448,489 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01668,626,638 - 68,753,293 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
BANP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1565,151,863 - 65,256,782 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl565,152,247 - 65,256,667 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha565,162,111 - 65,267,012 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0565,371,550 - 65,476,482 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl565,371,548 - 65,476,442 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1565,397,260 - 65,502,077 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0565,228,933 - 65,333,795 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0565,635,910 - 65,740,823 (-)NCBIUU_Cfam_GSD_1.0
Banp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934925,633,182 - 25,719,262 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366411,386,592 - 1,472,750 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BANP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl61,421,462 - 1,495,486 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.161,421,460 - 1,495,484 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.261,560,880 - 1,595,741 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BANP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1573,341,241 - 73,466,636 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl573,341,729 - 73,466,949 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660472,238,241 - 2,366,635 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Banp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247461,203,275 - 1,286,241 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247461,205,212 - 1,287,108 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
BF399372  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21950,082,003 - 50,082,217 (+)MAPPERmRatBN7.2
Rnor_6.01954,840,093 - 54,840,306NCBIRnor6.0
Rnor_5.01965,559,281 - 65,559,494UniSTSRnor5.0
RGSC_v3.41952,268,028 - 52,268,241UniSTSRGSC3.4
Celera1949,325,887 - 49,326,100UniSTS
RH 3.4 Map19698.1UniSTS
Cytogenetic Map19q12UniSTS
RH135281  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21950,055,329 - 50,055,536 (+)MAPPERmRatBN7.2
Rnor_6.01954,814,060 - 54,814,266NCBIRnor6.0
Rnor_5.01965,533,306 - 65,533,512UniSTSRnor5.0
RGSC_v3.41952,241,134 - 52,241,340UniSTSRGSC3.4
Celera1949,300,393 - 49,300,599UniSTS
RH 3.4 Map19697.4UniSTS
Cytogenetic Map19q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194997648153225766Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:39
Interacting mature miRNAs:45
Transcripts:ENSRNOT00000025894
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 23 30 14 19 14 3 74 27 35 11
Low 20 27 27 27 8 8 8 6 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC109048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC160844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000025894   ⟹   ENSRNOP00000025894
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1950,007,881 - 50,082,737 (+)Ensembl
Rnor_6.0 Ensembl1954,766,589 - 54,840,569 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106329   ⟹   ENSRNOP00000085557
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1950,007,884 - 50,082,735 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106448   ⟹   ENSRNOP00000088499
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1950,007,892 - 50,082,738 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108349   ⟹   ENSRNOP00000092851
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1950,007,892 - 50,082,738 (+)Ensembl
RefSeq Acc Id: NM_001106191   ⟹   NP_001099661
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,007,864 - 50,082,497 (+)NCBI
Rnor_6.01954,766,595 - 54,840,586 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
RGSC_v3.41952,193,660 - 52,268,521 (+)RGD
Celera1949,252,953 - 49,326,380 (+)RGD
Sequence:
RefSeq Acc Id: XM_006255751   ⟹   XP_006255813
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,007,833 - 50,082,742 (+)NCBI
Rnor_6.01954,766,589 - 54,843,794 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255752   ⟹   XP_006255814
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,007,833 - 50,082,742 (+)NCBI
Rnor_6.01954,766,589 - 54,843,794 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255753   ⟹   XP_006255815
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,007,833 - 50,082,742 (+)NCBI
Rnor_6.01954,766,609 - 54,843,794 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255754   ⟹   XP_006255816
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,007,833 - 50,082,742 (+)NCBI
Rnor_6.01954,766,609 - 54,843,794 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255756   ⟹   XP_006255818
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,007,833 - 50,082,742 (+)NCBI
Rnor_6.01954,766,589 - 54,843,795 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255757   ⟹   XP_006255819
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,007,833 - 50,082,742 (+)NCBI
Rnor_6.01954,766,609 - 54,843,795 (+)NCBI
Rnor_5.01965,485,716 - 65,562,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008772601   ⟹   XP_008770823
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,007,989 - 50,082,742 (+)NCBI
Rnor_6.01954,766,701 - 54,843,794 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601240   ⟹   XP_017456729
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,007,710 - 50,082,742 (+)NCBI
Rnor_6.01954,766,441 - 54,843,794 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601241   ⟹   XP_017456730
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,007,710 - 50,082,742 (+)NCBI
Rnor_6.01954,766,441 - 54,843,794 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601242   ⟹   XP_017456731
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,007,710 - 50,082,742 (+)NCBI
Rnor_6.01954,766,441 - 54,843,794 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601243   ⟹   XP_017456732
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,007,710 - 50,082,742 (+)NCBI
Rnor_6.01954,766,441 - 54,843,795 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601244   ⟹   XP_017456733
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,007,710 - 50,082,742 (+)NCBI
Rnor_6.01954,766,441 - 54,843,795 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039097647   ⟹   XP_038953575
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,008,402 - 50,082,742 (+)NCBI
RefSeq Acc Id: XM_039097648   ⟹   XP_038953576
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,007,710 - 50,082,742 (+)NCBI
RefSeq Acc Id: XM_039097649   ⟹   XP_038953577
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,007,879 - 50,082,742 (+)NCBI
RefSeq Acc Id: XM_039097650   ⟹   XP_038953578
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,027,870 - 50,082,742 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001099661   ⟸   NM_001106191
- UniProtKB: B1H235 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255813   ⟸   XM_006255751
- Peptide Label: isoform X6
- UniProtKB: B1H235 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255814   ⟸   XM_006255752
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006255818   ⟸   XM_006255756
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006255815   ⟸   XM_006255753
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006255816   ⟸   XM_006255754
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006255819   ⟸   XM_006255757
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_008770823   ⟸   XM_008772601
- Peptide Label: isoform X6
- UniProtKB: B1H235 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456732   ⟸   XM_017601243
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017456733   ⟸   XM_017601244
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017456729   ⟸   XM_017601240
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017456730   ⟸   XM_017601241
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017456731   ⟸   XM_017601242
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000025894   ⟸   ENSRNOT00000025894
RefSeq Acc Id: XP_038953576   ⟸   XM_039097648
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038953577   ⟸   XM_039097649
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038953575   ⟸   XM_039097647
- Peptide Label: isoform X6
- UniProtKB: B1H235 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953578   ⟸   XM_039097650
- Peptide Label: isoform X14
RefSeq Acc Id: ENSRNOP00000092851   ⟸   ENSRNOT00000108349
RefSeq Acc Id: ENSRNOP00000088499   ⟸   ENSRNOT00000106448
RefSeq Acc Id: ENSRNOP00000085557   ⟸   ENSRNOT00000106329
Protein Domains
BEN

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1H235-F1-model_v2 AlphaFold B1H235 1-548 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701203
Promoter ID:EPDNEW_R11725
Type:initiation region
Name:Banp_1
Description:Btg3 associated nuclear protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01954,766,612 - 54,766,672EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307464 AgrOrtholog
BioCyc Gene G2FUF-5408 BioCyc
Ensembl Genes ENSRNOG00000019140 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000025894 ENTREZGENE
  ENSRNOP00000025894.6 UniProtKB/TrEMBL
  ENSRNOP00000085557 ENTREZGENE
  ENSRNOP00000085557.1 UniProtKB/TrEMBL
  ENSRNOP00000088499 ENTREZGENE
  ENSRNOP00000088499.1 UniProtKB/TrEMBL
  ENSRNOP00000092851 ENTREZGENE
  ENSRNOP00000092851.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025894 ENTREZGENE
  ENSRNOT00000025894.6 UniProtKB/TrEMBL
  ENSRNOT00000106329 ENTREZGENE
  ENSRNOT00000106329.1 UniProtKB/TrEMBL
  ENSRNOT00000106448 ENTREZGENE
  ENSRNOT00000106448.1 UniProtKB/TrEMBL
  ENSRNOT00000108349 ENTREZGENE
  ENSRNOT00000108349.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8361869 IMAGE-MGC_LOAD
InterPro BANP UniProtKB/TrEMBL
  BEN_domain UniProtKB/TrEMBL
KEGG Report rno:292064 UniProtKB/TrEMBL
MGC_CLONE MGC:187571 IMAGE-MGC_LOAD
NCBI Gene 292064 ENTREZGENE
PANTHER PTHR16243 UniProtKB/TrEMBL
Pfam BEN UniProtKB/TrEMBL
PhenoGen Banp PhenoGen
PROSITE BEN UniProtKB/TrEMBL
SMART BEN UniProtKB/TrEMBL
UniProt A0A8I6A1X0_RAT UniProtKB/TrEMBL
  A0A8I6AGC7_RAT UniProtKB/TrEMBL
  B1H235 ENTREZGENE, UniProtKB/TrEMBL
  F7F0I6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Banp  Btg3 associated nuclear protein   Banp_predicted  Btg3 associated nuclear protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Banp_predicted  Btg3 associated nuclear protein (predicted)      Symbol and Name status set to approved 70820 APPROVED