Septin11 (septin 11) - Rat Genome Database

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Gene: Septin11 (septin 11) Rattus norvegicus
Analyze
Symbol: Septin11
Name: septin 11
RGD ID: 1307405
Description: Predicted to enable GTPase activity and molecular adaptor activity. Involved in regulation of synapse organization. Is active in GABA-ergic synapse; glutamatergic synapse; and postsynaptic specialization of symmetric synapse. Orthologous to human SEPTIN11 (septin 11); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dibromophenyl 2,4,5-tribromophenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC305227; Sept11; Sept6; septin 6; septin-11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21414,844,759 - 14,990,856 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1414,844,580 - 14,990,853 (-)Ensembl
Rnor_6.01416,369,544 - 16,405,645 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1416,369,544 - 16,452,998 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01416,295,536 - 16,331,637 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41416,465,348 - 16,501,284 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11416,464,587 - 16,550,314 (-)NCBI
Celera1414,310,209 - 14,346,008 (-)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
3-chloropropane-1,2-diol  (EXP)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
acetamide  (EXP)
aconitine  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
Benoxacor  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bucladesine  (ISO)
carbon nanotube  (ISO)
chrysene  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
eugenol  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
hyaluronic acid  (EXP)
hydrogen peroxide  (EXP)
isotretinoin  (ISO)
ivermectin  (ISO)
mancozeb  (ISO)
medroxyprogesterone acetate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
microcystin  (EXP)
microcystin RR  (ISO)
nickel sulfate  (ISO)
paracetamol  (EXP,ISO)
phenylmercury acetate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP)
sunitinib  (ISO)
tamibarotene  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
tetrahydropalmatine  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
torcetrapib  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc sulfate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:12477932   PMID:15485874   PMID:16854843   PMID:17546647   PMID:18809578   PMID:22871113   PMID:23376485   PMID:29476059  


Genomics

Comparative Map Data
Septin11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21414,844,759 - 14,990,856 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1414,844,580 - 14,990,853 (-)Ensembl
Rnor_6.01416,369,544 - 16,405,645 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1416,369,544 - 16,452,998 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01416,295,536 - 16,331,637 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41416,465,348 - 16,501,284 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11416,464,587 - 16,550,314 (-)NCBI
Celera1414,310,209 - 14,346,008 (-)NCBICelera
Cytogenetic Map14p22NCBI
SEPTIN11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38476,949,752 - 77,040,154 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl476,949,751 - 77,040,384 (+)EnsemblGRCh38hg38GRCh38
GRCh37477,870,905 - 77,959,768 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36478,089,919 - 78,178,792 (+)NCBINCBI36hg18NCBI36
Build 34478,228,073 - 78,316,946NCBI
Celera475,172,269 - 75,261,155 (+)NCBI
Cytogenetic Map4q21.1NCBI
HuRef473,622,723 - 73,711,589 (+)NCBIHuRef
CHM1_1477,848,139 - 77,937,022 (+)NCBICHM1_1
Septin11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39593,227,445 - 93,329,237 (+)NCBIGRCm39mm39
GRCm39 Ensembl593,241,296 - 93,324,306 (+)Ensembl
GRCm38593,090,995 - 93,182,368 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl593,093,437 - 93,176,447 (+)EnsemblGRCm38mm10GRCm38
MGSCv37593,522,483 - 93,603,984 (+)NCBIGRCm37mm9NCBIm37
MGSCv36594,168,661 - 94,250,162 (+)NCBImm8
Celera591,247,357 - 91,328,543 (+)NCBICelera
Cytogenetic Map5E2NCBI
cM Map547.29NCBI
Septin11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554331,606,261 - 1,691,812 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554331,606,246 - 1,691,819 (+)NCBIChiLan1.0ChiLan1.0
SEPTIN11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1453,004,755 - 53,095,427 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl453,006,294 - 53,095,844 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0447,165,381 - 47,255,954 (-)NCBIMhudiblu_PPA_v0panPan3
SEPTIN11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1321,553,208 - 1,608,132 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl321,475,748 - 1,607,107 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3240,276,043 - 40,371,637 (-)NCBI
ROS_Cfam_1.0321,538,003 - 1,640,039 (+)NCBI
ROS_Cfam_1.0 Ensembl321,539,127 - 1,640,050 (+)Ensembl
UMICH_Zoey_3.1321,536,272 - 1,629,688 (+)NCBI
UNSW_CanFamBas_1.0321,492,069 - 1,585,224 (+)NCBI
UU_Cfam_GSD_1.03238,587,743 - 38,684,577 (-)NCBI
Septin11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528510,562,850 - 10,699,922 (-)NCBI
SpeTri2.0NW_004936676852,115 - 944,387 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEPTIN11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl872,543,620 - 72,679,173 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1872,543,641 - 72,679,173 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2876,788,927 - 76,879,982 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEPTIN11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1725,449,480 - 25,541,029 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl725,448,672 - 25,535,055 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660373,797,467 - 3,894,729 (+)NCBIVero_WHO_p1.0
Septin11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475713,932,153 - 14,039,741 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
AW548875  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21414,909,373 - 14,909,477 (+)MAPPERmRatBN7.2
Rnor_6.01416,371,189 - 16,371,292NCBIRnor6.0
Rnor_5.01416,297,181 - 16,297,284UniSTSRnor5.0
RGSC_v3.41416,466,993 - 16,467,096UniSTSRGSC3.4
Celera1414,311,854 - 14,311,957UniSTS
Cytogenetic Map14p22UniSTS
RH136848  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21414,908,961 - 14,909,164 (+)MAPPERmRatBN7.2
Rnor_6.01416,370,777 - 16,370,979NCBIRnor6.0
Rnor_5.01416,296,769 - 16,296,971UniSTSRnor5.0
RGSC_v3.41416,466,581 - 16,466,783UniSTSRGSC3.4
Celera1414,311,442 - 14,311,644UniSTS
RH 3.4 Map14163.6UniSTS
Cytogenetic Map14p22UniSTS
RH138671  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21414,907,156 - 14,907,333 (+)MAPPERmRatBN7.2
Rnor_6.01416,368,973 - 16,369,149NCBIRnor6.0
Rnor_5.01416,294,965 - 16,295,141UniSTSRnor5.0
RGSC_v3.41416,464,777 - 16,464,953UniSTSRGSC3.4
Celera1414,309,638 - 14,309,814UniSTS
RH 3.4 Map14165.2UniSTS
Cytogenetic Map14p22UniSTS
RH139145  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21414,909,378 - 14,909,545 (+)MAPPERmRatBN7.2
Rnor_6.01416,371,194 - 16,371,360NCBIRnor6.0
Rnor_5.01416,297,186 - 16,297,352UniSTSRnor5.0
RGSC_v3.41416,466,998 - 16,467,164UniSTSRGSC3.4
Celera1414,311,859 - 14,312,025UniSTS
RH 3.4 Map14177.4UniSTS
Cytogenetic Map14p22UniSTS
UniSTS:235223  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21414,910,095 - 14,910,270 (+)MAPPERmRatBN7.2
Rnor_6.01416,371,911 - 16,372,085NCBIRnor6.0
Rnor_5.01416,297,903 - 16,298,077UniSTSRnor5.0
RGSC_v3.41416,467,715 - 16,467,889UniSTSRGSC3.4
Celera1414,312,576 - 14,312,750UniSTS
Cytogenetic Map14p22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14121760616960180Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)14381307418274691Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14381307418274691Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062228035204Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141103081230320092Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141487516830883947Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:106
Count of miRNA genes:80
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000067222
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 37 38 28 19 28 2 5 74 35 34 11 2
Low 6 19 13 13 6 6 7 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC167769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU711414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU711415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU711416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU711417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000067222   ⟹   ENSRNOP00000062626
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1414,907,377 - 14,990,701 (-)Ensembl
Rnor_6.0 Ensembl1416,369,544 - 16,452,890 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091577   ⟹   ENSRNOP00000069146
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1414,908,882 - 14,990,773 (-)Ensembl
Rnor_6.0 Ensembl1416,371,979 - 16,452,998 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100885   ⟹   ENSRNOP00000090314
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1414,907,350 - 14,990,832 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103937   ⟹   ENSRNOP00000090630
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1414,915,428 - 14,943,737 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111632   ⟹   ENSRNOP00000078633
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1414,844,580 - 14,990,853 (-)Ensembl
RefSeq Acc Id: NM_001107208   ⟹   NP_001100678
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21414,907,350 - 14,990,832 (-)NCBI
Rnor_6.01416,369,544 - 16,405,645 (-)NCBI
Rnor_5.01416,295,536 - 16,331,637 (-)NCBI
RGSC_v3.41416,465,348 - 16,501,284 (-)RGD
Celera1414,310,209 - 14,346,008 (-)RGD
Sequence:
RefSeq Acc Id: XM_039091842   ⟹   XP_038947770
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21414,908,880 - 14,990,856 (-)NCBI
RefSeq Acc Id: XM_039091843   ⟹   XP_038947771
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21414,907,328 - 14,990,856 (-)NCBI
RefSeq Acc Id: XM_039091844   ⟹   XP_038947772
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21414,908,880 - 14,990,856 (-)NCBI
RefSeq Acc Id: XM_039091845   ⟹   XP_038947773
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21414,907,328 - 14,990,856 (-)NCBI
RefSeq Acc Id: XM_039091846   ⟹   XP_038947774
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21414,907,328 - 14,990,856 (-)NCBI
RefSeq Acc Id: XM_039091847   ⟹   XP_038947775
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21414,908,880 - 14,990,856 (-)NCBI
RefSeq Acc Id: XM_039091848   ⟹   XP_038947776
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21414,907,844 - 14,990,856 (-)NCBI
RefSeq Acc Id: XM_039091849   ⟹   XP_038947777
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21414,844,759 - 14,990,856 (-)NCBI
RefSeq Acc Id: XM_039091850   ⟹   XP_038947778
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21414,907,328 - 14,990,856 (-)NCBI
RefSeq Acc Id: XR_005492931
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21414,907,328 - 14,990,856 (-)NCBI
RefSeq Acc Id: XR_005492932
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21414,907,844 - 14,990,856 (-)NCBI
RefSeq Acc Id: XR_005492933
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21414,907,328 - 14,990,856 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001100678   ⟸   NM_001107208
- UniProtKB: B3GNI6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000062626   ⟸   ENSRNOT00000067222
RefSeq Acc Id: ENSRNOP00000069146   ⟸   ENSRNOT00000091577
RefSeq Acc Id: XP_038947777   ⟸   XM_039091849
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038947778   ⟸   XM_039091850
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038947774   ⟸   XM_039091846
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038947773   ⟸   XM_039091845
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038947771   ⟸   XM_039091843
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038947776   ⟸   XM_039091848
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038947772   ⟸   XM_039091844
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038947770   ⟸   XM_039091842
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038947775   ⟸   XM_039091847
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000090314   ⟸   ENSRNOT00000100885
RefSeq Acc Id: ENSRNOP00000078633   ⟸   ENSRNOT00000111632
RefSeq Acc Id: ENSRNOP00000090630   ⟸   ENSRNOT00000103937
Protein Domains
Septin-type G

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B3GNI6-F1-model_v2 AlphaFold B3GNI6 1-431 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307405 AgrOrtholog
BioCyc Gene G2FUF-16283 BioCyc
Ensembl Genes ENSRNOG00000002182 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000062626 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000069146 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000078633 ENTREZGENE
  ENSRNOP00000090314 ENTREZGENE
Ensembl Transcript ENSRNOT00000067222 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000091577 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000100885 ENTREZGENE
  ENSRNOT00000111632 ENTREZGENE
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7456582 IMAGE-MGC_LOAD
InterPro G_SEPTIN_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Septin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:305227 UniProtKB/Swiss-Prot
MGC_CLONE MGC:187546 IMAGE-MGC_LOAD
NCBI Gene 305227 ENTREZGENE
Pfam Septin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Septin11 PhenoGen
PIRSF Septin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_SEPTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JUL7_RAT UniProtKB/TrEMBL
  B3GNI6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B3DMA8 UniProtKB/Swiss-Prot
  B3GNI4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-05 Septin11  septin 11  Sept11  septin 11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Sept11  septin 11  Sept6_predicted  septin 6 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Sept6_predicted  septin 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED