![]()
Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Chemical and Drug Induced Liver Injury | | ISO | RGD:1316534 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:25231249 | |
|
![]()
Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Chemical and Drug Induced Liver Injury | | ISO | RGD:1316534 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:25231249 | |
|
|
|
|
|
# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
3. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
4. | GOA pipeline | RGD automated data pipeline |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Xylb (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
XYLB (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Xylb (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Xylb (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
XYLB (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
XYLB (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Xylb (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
XYLB (Sus scrofa - pig) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
XYLB (Chlorocebus sabaeus - green monkey) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Xylb (Heterocephalus glaber - naked mole-rat) |
|
.
Variants in Xylb
248 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
RH129038 |
|
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 12 | 48 | 41 | 41 | 21 | 35 | 28 | 3 | ||||
Low | 31 | 9 | 19 | 8 | 11 | 53 | 13 | 8 | 8 | ||||
Below cutoff |
RefSeq Transcripts | NM_001033704 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006244096 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017595698 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017595699 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039081640 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039081641 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039081642 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039081643 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039081644 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_356707 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | BC101852 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
CH473954 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JACYVU010000200 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000019106 ⟹ ENSRNOP00000019106 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000104648 ⟹ ENSRNOP00000077183 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000120248 ⟹ ENSRNOP00000092265 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | NM_001033704 ⟹ NP_001028876 | ||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
|
||||||||||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_006244096 ⟹ XP_006244158 | ||||||||||||||||
RefSeq Status: | |||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
|
||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_017595698 ⟹ XP_017451187 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
||||||||||||
Sequence: |
RefSeq Acc Id: | XM_017595699 ⟹ XP_017451188 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
||||||||||||
Sequence: |
RefSeq Acc Id: | XM_039081640 ⟹ XP_038937568 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_039081641 ⟹ XP_038937569 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_039081642 ⟹ XP_038937570 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_039081643 ⟹ XP_038937571 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_039081644 ⟹ XP_038937572 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XR_356707 | ||||||||||||||||
RefSeq Status: | |||||||||||||||||
Type: | NON-CODING | ||||||||||||||||
Position: |
|
||||||||||||||||
Sequence: |
Protein RefSeqs | NP_001028876 | (Get FASTA) | NCBI Sequence Viewer |
XP_006244158 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017451187 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017451188 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038937568 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038937569 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038937570 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038937571 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038937572 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAI01853 | (Get FASTA) | NCBI Sequence Viewer |
EDL76914 | (Get FASTA) | NCBI Sequence Viewer | |
Q3MIF4 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001028876 ⟸ NM_001033704 |
- UniProtKB: | A0A8I5Y795 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006244158 ⟸ XM_006244096 |
- Peptide Label: | isoform X5 |
- Sequence: |
RefSeq Acc Id: | XP_017451188 ⟸ XM_017595699 |
- Peptide Label: | isoform X3 |
- Sequence: |
RefSeq Acc Id: | XP_017451187 ⟸ XM_017595698 |
- Peptide Label: | isoform X2 |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000019106 ⟸ ENSRNOT00000019106 |
RefSeq Acc Id: | XP_038937570 ⟸ XM_039081642 |
- Peptide Label: | isoform X6 |
RefSeq Acc Id: | XP_038937572 ⟸ XM_039081644 |
- Peptide Label: | isoform X8 |
RefSeq Acc Id: | XP_038937569 ⟸ XM_039081641 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | XP_038937568 ⟸ XM_039081640 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_038937571 ⟸ XM_039081643 |
- Peptide Label: | isoform X7 |
RefSeq Acc Id: | ENSRNOP00000092265 ⟸ ENSRNOT00000120248 |
RefSeq Acc Id: | ENSRNOP00000077183 ⟸ ENSRNOT00000104648 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q3MIF4-F1-model_v2 | AlphaFold | Q3MIF4 | 1-536 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13696371 | ||||||||
Promoter ID: | EPDNEW_R6896 | ||||||||
Type: | initiation region | ||||||||
Name: | Xylb_1 | ||||||||
Description: | xylulokinase | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
|
Database | Acc Id | Source(s) |
AGR Gene | RGD:1307372 | AgrOrtholog |
BioCyc Gene | G2FUF-28789 | BioCyc |
Ensembl Genes | ENSRNOG00000014168 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Protein | ENSRNOP00000019106.8 | UniProtKB/TrEMBL |
ENSRNOP00000077183 | ENTREZGENE | |
ENSRNOP00000077183.1 | UniProtKB/TrEMBL | |
ENSRNOP00000092265.1 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENSRNOT00000019106.8 | UniProtKB/TrEMBL |
ENSRNOT00000104648 | ENTREZGENE | |
ENSRNOT00000104648.1 | UniProtKB/TrEMBL | |
ENSRNOT00000120248.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.30.420.40 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
IMAGE_CLONE | IMAGE:7930657 | IMAGE-MGC_LOAD |
InterPro | ATPase_NBD | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Carb_kinase_FGGY | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Carb_kinase_FGGY_C | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Carb_kinase_FGGY_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
D-XK_euk | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:316067 | UniProtKB/Swiss-Prot |
MGC_CLONE | MGC:124790 | IMAGE-MGC_LOAD |
NCBI Gene | 316067 | ENTREZGENE |
PANTHER | SUGAR KINASE | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
XYLULOSE KINASE | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | FGGY_C | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
FGGY_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Xylb | PhenoGen |
PIRSF | GlpK | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Superfamily-SCOP | SSF53067 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A8I5Y795 | ENTREZGENE, UniProtKB/TrEMBL |
A0A8I6AH82_RAT | UniProtKB/TrEMBL | |
G3V7T5_RAT | UniProtKB/TrEMBL | |
Q3MIF4 | ENTREZGENE, UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2016-07-07 | Xylb | xylulokinase | Xylb | xylulokinase homolog (H. influenzae) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-12-06 | Xylb | xylulokinase homolog (H. influenzae) | Xylb_predicted | xylulokinase homolog (H. influenzae) (predicted) | Symbol and Name updated | 1559027 | APPROVED |
2005-01-12 | Xylb_predicted | xylulokinase homolog (H. influenzae) (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |