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Gene: Smchd1 (structural maintenance of chromosomes flexible hinge domain containing 1) Rattus norvegicus
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Symbol: Smchd1
Name: structural maintenance of chromosomes flexible hinge domain containing 1
Description: Predicted to have ATPase activity and protein homodimerization activity. Predicted to be involved in nose development; regulation of double-strand break repair; and regulation of gene expression, epigenetic. Predicted to colocalize with the nuclear chromosome, telomeric region. Human ortholog(s) of this gene implicated in facioscapulohumeral muscular dystrophy 2. Orthologous to human SMCHD1 (structural maintenance of chromosomes flexible hinge domain containing 1); INTERACTS WITH acrylamide; bisphenol A; Brodifacoum.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC316732; RGD1307234; similar to RIKEN cDNA 4931400A14; structural maintenance of chromosomes flexible hinge domain-containing protein 1
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.09119,675,750 - 119,818,620 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9119,676,628 - 119,818,310 (-)Ensembl
Rnor_5.09119,128,945 - 119,272,041 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49110,535,987 - 110,680,034 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.19110,753,793 - 110,888,830 (-)NCBI
Celera9108,371,971 - 108,513,633 (-)NCBICelera
Cytogenetic Map9q38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Smchd1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1307234
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.