Ska3 (spindle and kinetochore associated complex subunit 3)

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Gene: Ska3 (spindle and kinetochore associated complex subunit 3) Rattus norvegicus

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Symbol:

Ska3

Name:

spindle and kinetochore associated complex subunit 3

RGD ID:

1307201

Description:

Predicted to enable microtubule binding activity. Predicted to be involved in establishment of meiotic spindle orientation; nuclear chromosome segregation; and regulation of organelle organization. Predicted to be located in centrosome; cytosol; and mitotic spindle. Predicted to be part of SKA complex. Predicted to be active in kinetochore and spindle microtubule. Orthologous to human SKA3 (spindle and kinetochore associated complex subunit 3); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC361047; RGD1307201; similar to chromosome 13 open reading frame 3; spindle and kinetochore-associated protein 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	36,067,372 - 36,086,563 (-)	NCBI		GRCr8
mRatBN7.2	15	31,951,812 - 31,971,010 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	31,951,825 - 31,971,010 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	33,944,005 - 33,962,337 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	35,094,675 - 35,113,007 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	33,352,759 - 33,371,092 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	38,077,903 - 38,097,100 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	38,077,909 - 38,096,875 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	41,918,694 - 41,937,891 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	36,848,694 - 36,867,026 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	36,864,972 - 36,877,317 (-)	NCBI
Celera	15	31,663,336 - 31,681,669 (-)	NCBI		Celera
Cytogenetic Map	15	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hepatocellular carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

DDE (ISO)

diarsenic trioxide (ISO)

Enterolactone (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

hydrogen peroxide (ISO)

lead(0) (ISO)

lidocaine (EXP)

menadione (ISO)

methotrexate (ISO)

N-Nitrosopyrrolidine (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorooctanoic acid (ISO)

phenethyl isothiocyanate (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (ISO)

thioacetamide (EXP)

thiram (ISO)

topotecan (EXP)

trovafloxacin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

attachment of mitotic spindle microtubules to kinetochore (IEA,ISO,ISS)

cell division (IEA)

chromosome segregation (IBA,IEA)

establishment of meiotic spindle orientation (ISS)

metaphase chromosome alignment (ISO)

mitotic cell cycle (IBA)

mitotic metaphase chromosome alignment (ISO,ISS)

mitotic sister chromatid segregation (ISO,ISS)

negative regulation of mitotic spindle assembly checkpoint signaling (IEA,ISO,ISS)

regulation of microtubule polymerization or depolymerization (IEA,ISO,ISS)

spindle assembly involved in female meiosis (ISO,ISS)

Cellular Component

centrosome (IEA,ISO,ISS)

cytoplasm (IEA)

cytoskeleton (IEA)

cytosol (IEA,ISO)

kinetochore (IBA,ISO,ISS)

meiotic spindle (ISO)

mitotic spindle (IEA,ISO,ISS)

outer kinetochore (IBA,IEA,ISO,ISS)

SKA complex (IEA,ISO)

spindle microtubule (IBA,IEA,ISO,ISS)

Molecular Function

microtubule binding (IEA,ISO,ISS)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:19289083	PMID:20813266

Genomics

Comparative Map Data

Ska3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	36,067,372 - 36,086,563 (-)	NCBI		GRCr8
mRatBN7.2	15	31,951,812 - 31,971,010 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	31,951,825 - 31,971,010 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	33,944,005 - 33,962,337 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	35,094,675 - 35,113,007 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	33,352,759 - 33,371,092 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	38,077,903 - 38,097,100 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	38,077,909 - 38,096,875 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	41,918,694 - 41,937,891 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	36,848,694 - 36,867,026 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	36,864,972 - 36,877,317 (-)	NCBI
Celera	15	31,663,336 - 31,681,669 (-)	NCBI		Celera
Cytogenetic Map	15	p12	NCBI

SKA3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	21,153,595 - 21,176,552 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	21,153,595 - 21,176,552 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	21,727,734 - 21,750,691 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	20,625,734 - 20,648,710 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	20,625,734 - 20,648,710	NCBI
Celera	13	2,789,717 - 2,812,399 (-)	NCBI		Celera
Cytogenetic Map	13	q12.11	NCBI
HuRef	13	2,529,177 - 2,551,862 (-)	NCBI		HuRef
CHM1_1	13	21,695,750 - 21,718,428 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	20,346,668 - 20,369,632 (-)	NCBI		T2T-CHM13v2.0

Ska3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	58,044,016 - 58,063,748 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	58,044,018 - 58,063,642 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	57,806,558 - 57,826,291 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	57,806,561 - 57,826,185 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	58,425,398 - 58,445,000 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	56,760,671 - 56,780,273 (-)	NCBI		MGSCv36	mm8
Celera	14	55,603,097 - 55,622,698 (-)	NCBI		Celera
Cytogenetic Map	14	C3	NCBI
cM Map	14	30.51	NCBI

Ska3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955497	1,875,695 - 1,896,587 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955497	1,874,911 - 1,896,588 (-)	NCBI	ChiLan1.0	ChiLan1.0

SKA3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	20,784,341 - 20,818,841 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	11,897,684 - 11,925,841 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	2,481,513 - 2,503,849 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	20,790,236 - 20,812,638 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	20,790,516 - 20,812,554 (-)	Ensembl	panpan1.1		panPan2

SKA3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	16,982,174 - 17,011,496 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	16,981,931 - 17,001,803 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	17,078,828 - 17,108,137 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	17,118,457 - 17,147,871 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	17,118,211 - 17,138,178 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	16,993,044 - 17,022,404 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	17,004,451 - 17,033,873 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	17,060,592 - 17,089,963 (+)	NCBI		UU_Cfam_GSD_1.0

Ska3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	119,039,152 - 119,062,514 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936720	586,850 - 605,406 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936720	586,730 - 610,397 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SKA3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	1,302,886 - 1,320,981 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	1,302,880 - 1,321,132 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	439,296 - 450,351 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SKA3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	32,645 - 57,771 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666057	44,559,055 - 44,584,244 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ska3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624776	16,413,048 - 16,445,892 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624776	16,412,683 - 16,450,784 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ska3
3 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	113
Count of miRNA genes:	97
Interacting mature miRNAs:	101
Transcripts:	ENSRNOT00000032723
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331729	Rf42	Renal function QTL 42	3.071		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	15	17362897	73690657	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	42356671	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	28030665	82262678	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	22806240	98288169	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	22806240	98288169	Rat
9589149	Insul29	Insulin level QTL 29	9.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	15	1	34723002	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	306329	45306329	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	12496141	65205939	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	1	55302115	Rat
2293688	Bss29	Bone structure and strength QTL 29	5.31	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	15	11111142	56111142	Rat
8552920	Pigfal8	Plasma insulin-like growth factor 1 level QTL 8	3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	15	1	34723002	Rat
8694361	Abfw6	Abdominal fat weight QTL 6	10.2	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	15	1	34723002	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	28030665	82262678	Rat
631273	Lecl2	Lens clarity QTL 2		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	15	10596089	55596089	Rat
2300167	Bmd63	Bone mineral density QTL 63	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
731170	Pur3	Proteinuria QTL 3	2.3	0.0005	urine protein amount (VT:0005160)	urine protein excretion rate (CMO:0000759)	15	1	41686771	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2266368	46921453	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	22117933	67117933	Rat
2300173	Bmd62	Bone mineral density QTL 62	12.8	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	19856566	46187442	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	16725528	80672115	Rat
1582251	Gluco24	Glucose level QTL 24	3.2	0.0008	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	15	5530756	50530756	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	19856566	34924750	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	28030665	82262678	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	22806240	98288169	Rat

Markers in Region

RH143635

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	31,970,974 - 31,971,151 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	38,097,065 - 38,097,241	NCBI	Rnor6.0
Rnor_5.0	15	41,937,856 - 41,938,032	UniSTS	Rnor5.0
RGSC_v3.4	15	36,866,991 - 36,867,167	UniSTS	RGSC3.4
Celera	15	31,681,634 - 31,681,810	UniSTS
RH 3.4 Map	15	216.1	UniSTS
Cytogenetic Map	15	p12	UniSTS

BF386294

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	31,955,292 - 31,955,442 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	38,081,383 - 38,081,532	NCBI	Rnor6.0
Rnor_5.0	15	41,922,174 - 41,922,323	UniSTS	Rnor5.0
RGSC_v3.4	15	36,851,310 - 36,851,459	UniSTS	RGSC3.4
Celera	15	31,665,952 - 31,666,101	UniSTS
Cytogenetic Map	15	p12	UniSTS

AV005697

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	31,971,421 - 31,971,578 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	38,097,512 - 38,097,668	NCBI	Rnor6.0
Rnor_5.0	15	41,938,303 - 41,938,459	UniSTS	Rnor5.0
RGSC_v3.4	15	36,867,438 - 36,867,594	UniSTS	RGSC3.4
Celera	15	31,682,081 - 31,682,237	UniSTS
Cytogenetic Map	15	p12	UniSTS

RH140624

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	31,971,391 - 31,971,590 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	38,097,482 - 38,097,680	NCBI	Rnor6.0
Rnor_5.0	15	41,938,273 - 41,938,471	UniSTS	Rnor5.0
RGSC_v3.4	15	36,867,408 - 36,867,606	UniSTS	RGSC3.4
Celera	15	31,682,051 - 31,682,249	UniSTS
Cytogenetic Map	15	p12	UniSTS

RH140692

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	31,971,287 - 31,971,482 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	38,097,378 - 38,097,572	NCBI	Rnor6.0
Rnor_5.0	15	41,938,169 - 41,938,363	UniSTS	Rnor5.0
RGSC_v3.4	15	36,867,304 - 36,867,498	UniSTS	RGSC3.4
Celera	15	31,681,947 - 31,682,141	UniSTS
Cytogenetic Map	15	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000032723 ⟹ ENSRNOP00000033626

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	31,951,825 - 31,970,823 (-)	Ensembl
Rnor_6.0 Ensembl	15	38,077,909 - 38,096,875 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114233 ⟹ ENSRNOP00000087022

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	31,953,462 - 31,970,802 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117004 ⟹ ENSRNOP00000077309

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	31,953,256 - 31,971,010 (-)	Ensembl

RefSeq Acc Id:

NM_001108379 ⟹ NP_001101849

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	36,068,231 - 36,086,563 (-)	NCBI
mRatBN7.2	15	31,952,676 - 31,971,010 (-)	NCBI
Rnor_6.0	15	38,078,767 - 38,097,100 (-)	NCBI
Rnor_5.0	15	41,918,694 - 41,937,891 (-)	NCBI
RGSC_v3.4	15	36,848,694 - 36,867,026 (-)	RGD
Celera	15	31,663,336 - 31,681,669 (-)	RGD

Sequence:

show sequence

CCAGGAGCCGACTACACTACTGGGAAAGAGGGGACCTCCCCGAAAACCCACCTCGCGTACGAAC
TGACCACGGGAGAGGTTCCCTTAGAGTTCCGCGTACACTGACCCAAGCGGCTGCGCACGCGCGC
TGCTTCCGGCTAGCAGCGTTCCTGGTGCGAGACTTCCGCTCTCGCGAGAAAAGTCTGCGCCTGC
GCAGGGCGGGCGGCGCCTCCTCGACGCACGGATTCAAATGTGTGGCGCGTTCGAGGGGAGTGGA
GGTCGCTGTCTGCTCAGCTGCCTTCGGCATGAACCCCATCCAGAGTTTCCACTGTAAACTGCGG
AGTCTGGCCACCGTGCTGGATGGCGAGACGGCCCGGCTGCTGCGAGCGCTGGACGGGGAGGACA
GCGACTTTGAAGATTCTTCAGCGAGAATTTTGTGTGACCTTTATTCAGAAGTCCAGACTCTAAA
GGATGATGTTAATGCACATCTTGATAAAGCAAGATTGGAAAGTCGAGAAAGCACACATTTCATA
AAGGCAGCAAAAGTACTGATGAAAAAAAATTCAGCAGACATCATAAAACTGAGAGAGTTTTTCC
AGAAGTACGGATACCAAGCACGTGACAAGGAGGATTCAGCATGTGAGCACAGAGTAAGTAACTC
CAGCCCAGGGTTAGCTGTGTGTAAAGATACTCAAGAGCCTGGTGTGAAGCAGGAGCTGTCTGAG
CCCCGTGTTCCGCGCGGTTCTGCTCCTGAGGAGCCCCTGAGGAGCCCACAGCTGTCAGACTTTG
GACTTCAGCGGTACATGGTTTCCCAAGGCCCAGCCAATCCTCGCCAAGAGACTGTCAGCCTCAA
AGAAGACCGTGCATCTGAAACCACTCCTGCCAAAGACCCCTCTGTCCAGGTGTTGAAGACGCCT
AGATGTGCTCTGAAGATGGATGATTTTGAGTGTGTAACTCCTAAATTAGAACACTTTGGTATAT
CTGAATATACGATGTGTTTAAATGAGGATTATACAATGGGACTTAAAAATATGAAGAGTATTAA
AAGTTCCCCTCTGAGTGGTGTCGGTGGAGAAGCTGTAGAGACAGGGCCCGTGACCAGTGATAAT
TCCTTTGCCATTCCTGGTCCCATGATCCAGCAGCTGGAAAAAAATGATGTGGAATACATAAATT
CACCATTGCCACCTAAGTTCTGCACTCCTGGCTTGAAAATTCCTTCTTCGATGGACAGTACAGA
TCTGGTGTCTATAGATTATCCACTATCAAAACCAAATAGTTCACCAACTGATTTGGAAGATAAA
GATTGTGCCCCATTAATTTTAAATTCAGATGAATGCTATCAGAGTTTTGCAGACCCCCATTCTC
CAACAATTACTTCTTATGAAAATTTCACAACACCGTCTCCTCCGAAAGTCACTGCAATTCCAGA
AGACATCCTCCAGATGTTAAAGTACAACTCCAACCTAGCTTCTCCCATTGATGTTAAAGCGATG
CCACTGAGGAGAGGCTTCACGTCCAAGGGGCAGAGCACCCGGGGCGCTGCCAACAAGGAGAACT
GGTAACAGTGAGAATTCTACTGTGGATACATCTGATAAATACAGAAGCTGGAAAGTGAGCTGAA
CTG

hide sequence

RefSeq Acc Id:

XM_006252074 ⟹ XP_006252136

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	36,067,372 - 36,086,311 (-)	NCBI
mRatBN7.2	15	31,951,812 - 31,970,791 (-)	NCBI
Rnor_6.0	15	38,077,903 - 38,096,904 (-)	NCBI
Rnor_5.0	15	41,918,694 - 41,937,891 (-)	NCBI

Sequence:

show sequence

GCGGGCGGCGCCTCCTCGACGCACGGATTCAAATGTGTGGCGCGTTCGAGGGGAGTGGAGGTCG
CTGTCTGCTCAGCTGCCTTCGGCATGAACCCCATCCAGAGTTTCCACTGTAAACTGCGGAGTCT
GGCCACCGTGCTGGATGGCGAGACGGCCCGGCTGCTGCGAGCGCTGGACGGGGAGGACAGCGAA
GACTTTGAAGATTCTTCAGCGAGAATTTTGTGTGACCTTTATTCAGAAGTCCAGACTCTAAAGG
ATGATGTTAATGCACATCTTGATAAAGCAAGATTGGAAAGTCGAGAAAGCACACATTTCATAAA
GGCAGCAAAAGTACTGATGAAAAAAAATTCAGCAGACATCATAAAACTGAGAGAGTTTTTCCAG
AAGTACGGATACCAAGCACGTGACAAGGAGGATTCAGCATGTGAGCACAGAGTAAGTAACTCCA
GCCCAGGGTTAGCTGTGTGTAAAGATACTCAAGAGCCTGGTGTGAAGCAGGAGCTGTCTGAGCC
CCGTGTTCCGCGCGGTTCTGCTCCTGAGGAGCCCCTGAGGAGCCCACAGCTGTCAGACTTTGGA
CTTCAGCGGTACATGGTTTCCCAAGGCCCAGCCAATCCTCGCCAAGAGACTGTCAGCCTCAAAG
AAGACCGTGCATCTGAAACCACTCCTGCCAAAGACCCCTCTGTCCAGGTGTTGAAGACGCCTAG
ATGTGCTCTGAAGATGGATGATTTTGAGTGTGTAACTCCTAAATTAGAACACTTTGGTATATCT
GAATATACGATGTGTTTAAATGAGGATTATACAATGGGACTTAAAAATATGAAGAGTATTAAAA
GTTCCCCTCTGAGTGGTGTCGGTGGAGAAGCTGTAGAGACAGGGCCCGTGACCAGTGATAATTC
CTTTGCCATTCCTGGTCCCATGATCCAGCAGCTGGAAAAAAATGATGTGGAATACATAAATTCA
CCATTGCCACCTAAGTTCTGCACTCCTGGCTTGAAAATTCCTTCTTCGATGGACAGTACAGATC
TGGTGTCTATAGATTATCCACTATCAAAACCAAATAGTTCACCAACTGATTTGGAAGATAAAGA
TTGTGCCCCATTAATTTTAAATTCAGATGAATGCTATCAGAGTTTTGCAGACCCCCATTCTCCA
ACAATTACTTCTTATGAAAATTTCACAACACCGTCTCCTCCGAAAGTCACTGCAATTCCAGAAG
ACATCCTCCAGATGTTAAAGTACAACTCCAACCTAGCTTCTCCCATTGATGTTAAAGCGATGCC
ACTGAGGAGAGGCTTCACGTCCAAGGGGCAGAGCACCCGGGGCGCTGCCAACAAGGAGAACTGG
TAACAGAATTCTACTGTGGATACATCTGATAAATACAGAAGCTGGAAAGTGAGCTGAACTGAAG
TTCTCCAAATTCTAACTGATTAACAGAGTAGCAGAGGTGGAGAGGGTTTCCTCCCAGGGTTTAT
CTTACTTCATTCTTACATGAATGTTTCTGTTTCACCACACTGTGATGGCCTCTCCAGCTTGACC
ACCCAGCAGATCCTGATTCTACCTGGAAGATTCTGAACACCTGTGCTGAGGCAGAAGCCGTGGG
AACATCTGGAATCTAGAGCTTGGCCTCAGAGCCCAGGGTTCTTCTGATCCAAGAACAACTAGAA
AGCAATTCTCCAGGTTCATGGCAGTGCTGCTGGGAGAGCTTTGTGCTGCAGCCAGGTAGAGATG
AAAAGCTCTTCTGTAGGGACCAGCTACAGTTTTGAGAAGTAACTGGCTTACTACCAACTGACTT
ACTAGTCTTAGGAATTTTTTTCTCCCCAATACAGTGTTTCTCTGTGTAGCTATGGCAGTCCGGA
AACACTCAGACCAGGCTGGCCTTGAACTCAGAGATCTTCCTGTTTATGTGCACCACCACCATCT
GACAGCTTTAGGAAATTTTGTGTGGCATAAAGATTACTCTGTAATTGTGCATTGGAAATCAAGT
GGAGGGCTGGAGAGATGGCTTAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTC
AAATCCCAGCAGCCACATGGTGGGTGGCTCACAACCATCTGTAATGAAATCCAATGCCCTCTTC
TGGTGTGTCTGAAGACAGCTACAATGTACTTACGTACATAAAAGAATCAAGTGAGAAAAGTCCA
GGATAATTCTAAGTGTATTTTTTTGTTGTTGCTGTTGTACATAATGTAAAATAAGTGATTTTCA
GAATAAAACTCTAGTCCACCTTTCTTTCA

hide sequence

RefSeq Acc Id:

XM_006252075 ⟹ XP_006252137

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	36,067,372 - 36,086,311 (-)	NCBI
mRatBN7.2	15	31,951,812 - 31,970,788 (-)	NCBI
Rnor_6.0	15	38,077,903 - 38,096,904 (-)	NCBI
Rnor_5.0	15	41,918,694 - 41,937,891 (-)	NCBI

Sequence:

show sequence

GCGGGCGGCGCCTCCTCGACGCACGGATTCAAATGTGTGGCGCGTTCGAGGGGAGTGGAGGTCG
CTGTCTGCTCAGCTGCCTTCGGCATGAACCCCATCCAGAGTTTCCACTGTAAACTGCGGAGTCT
GGCCACCGTGCTGGATGGCGAGACGGCCCGGCTGCTGCGAGCGCTGGACGGGGAGGACAGCGAA
GACTTTGAAGATTCTTCAGCGAGAATTTTGTGTGACCTTTATTCAGAAGTCCAGACTCTAAAGG
ATGATGTTAATGCACATCTTGATAAAGCAAGATTGGAAAGTCGAGAAAGCACACATTTCATAAA
GGCAGCAAAAGTACTGATGAAAAAAAATTCAGCAGACATCATAAAACTGAGAGAGTTTTTCCAG
AAGTACGGATACCAAGCACGTGACAAGGAGGATTCAGCATGTGAGCACAGAGTAAGTAACTCCA
GCCCAGGGTTAGCTGTGTGTAAAGATACTCAAGAGCCTGGTGTGAAGCAGGAGCTGTCTGAGCC
CCGTGTTCCGCGCGGTTCTGCTCCTGAGGAGCCCCTGAGGAGCCCACAGCTGTCAGACTTTGGA
CTTCAGCGGTACATGGTTTCCCAAGGCCCAGCCAATCCTCGCCAAGAGACTGTCAGCCTCAAAG
AAGACCGTGCATCTGAAACCACTCCTGCCAAAGACCCCTCTGTCCAGGTGTTGAAGACGCCTAG
ATGTGCTCTGAAGATGGATGATTTTGAGTGTGTAACTCCTAAATTAGAACACTTTGGTATATCT
GAATATACGATGTGTTTAAATGAGGATTATACAATGGGACTTAAAAATATGAAGAGTATTAAAA
GTTCCCCTCTGAGTGGTGTCGGTGGAGAAGCTGTAGAGACAGGGCCCGTGACCAGTGATAATTC
CTTTGCCATTCCTGGTCCCATGATCCAGCAGCTGGAAAAAAATGATGTGGAATACATAAATTCA
CCATTGCCACCTAAGTTCTGCACTCCTGGCTTGAAAATTCCTTCTTCGATGGACAGTACAGATC
TGGTGTCTATAGATTATCCACTATCAAAACCAAATAGTTCACCAACTGATTTGGAAGATAAAGA
TTGTGCCCCATTAATTTTAAATTCAGATGAATGCTATCAGAGTTTTGCAGACCCCCATTCTCCA
ACAATTACTTCTTATGAAAATTTCACAACACCGTCTCCTCCGAAAGTCACTGCAATTCCAGAAG
ACATCCTCCAGATGTTAAAGTACAACTCCAACCTAGCTTCTCCCATTGATGTTAAAGCGATGCC
ACTGAGGAGAGGCTTCACGTCCAAGGGGCAGAGCACCCGGGGCGCTGCCAACAAGGAGAACTGG
TAACAGTGAGAATTCTACTGTGGATACATCTGATAAATACAGAAGCTGGAAAGTGAGCTGAACT
GAAGTTCTCCAAATTCTAACTGATTAACAGAGTAGCAGAGGTGGAGAGGGTTTCCTCCCAGGGT
TTATCTTACTTCATTCTTACATGAATGTTTCTGTTTCACCACACTGTGATGGCCTCTCCAGCTT
GACCACCCAGCAGATCCTGATTCTACCTGGAAGATTCTGAACACCTGTGCTGAGGCAGAAGCCG
TGGGAACATCTGGAATCTAGAGCTTGGCCTCAGAGCCCAGGGTTCTTCTGATCCAAGAACAACT
AGAAAGCAATTCTCCAGGTTCATGGCAGTGCTGCTGGGAGAGCTTTGTGCTGCAGCCAGGTAGA
GATGAAAAGCTCTTCTGTAGGGACCAGCTACAGTTTTGAGAAGTAACTGGCTTACTACCAACTG
ACTTACTAGTCTTAGGAATTTTTTTCTCCCCAATACAGTGTTTCTCTGTGTAGCTATGGCAGTC
CGGAAACACTCAGACCAGGCTGGCCTTGAACTCAGAGATCTTCCTGTTTATGTGCACCACCACC
ATCTGACAGCTTTAGGAAATTTTGTGTGGCATAAAGATTACTCTGTAATTGTGCATTGGAAATC
AAGTGGAGGGCTGGAGAGATGGCTTAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGA
GTTCAAATCCCAGCAGCCACATGGTGGGTGGCTCACAACCATCTGTAATGAAATCCAATGCCCT
CTTCTGGTGTGTCTGAAGACAGCTACAATGTACTTACGTACATAAAAGAATCAAGTGAGAAAAG
TCCAGGATAATTCTAAGTGTATTTTTTTGTTGTTGCTGTTGTACATAATGTAAAATAAGTGATT
TTCAGAATAAAACTCTAGTCCACCTTTCTTTCA

hide sequence

RefSeq Acc Id:

XM_063274410 ⟹ XP_063130480

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	36,067,372 - 36,086,309 (-)	NCBI

RefSeq Acc Id:

XM_063274411 ⟹ XP_063130481

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	36,070,848 - 36,086,311 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101849	(Get FASTA)	NCBI Sequence Viewer
	NP_001418614	(Get FASTA)	NCBI Sequence Viewer
	NP_001418617	(Get FASTA)	NCBI Sequence Viewer
	NP_001418619	(Get FASTA)	NCBI Sequence Viewer
	XP_006252136	(Get FASTA)	NCBI Sequence Viewer
	XP_006252137	(Get FASTA)	NCBI Sequence Viewer
	XP_063130480	(Get FASTA)	NCBI Sequence Viewer
	XP_063130481	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66461	(Get FASTA)	NCBI Sequence Viewer
	B2GUZ2	(Get FASTA)	NCBI Sequence Viewer
	EDM14361	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033626.5
	ENSRNOP00000077309.1
	ENSRNOP00000087022.1
	ENSRNOP00055017246
	ENSRNOP00060030617
	ENSRNOP00065041727

RefSeq Acc Id:

NP_001101849 ⟸ NM_001108379

- UniProtKB:

A0A8L2QHE9 (UniProtKB/TrEMBL), A6KHD2 (UniProtKB/TrEMBL), A0A8I5Y7E4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNPIQSFHCKLRSLATVLDGETARLLRALDGEDSDFEDSSARILCDLYSEVQTLKDDVNAHLDK
ARLESRESTHFIKAAKVLMKKNSADIIKLREFFQKYGYQARDKEDSACEHRVSNSSPGLAVCKD
TQEPGVKQELSEPRVPRGSAPEEPLRSPQLSDFGLQRYMVSQGPANPRQETVSLKEDRASETTP
AKDPSVQVLKTPRCALKMDDFECVTPKLEHFGISEYTMCLNEDYTMGLKNMKSIKSSPLSGVGG
EAVETGPVTSDNSFAIPGPMIQQLEKNDVEYINSPLPPKFCTPGLKIPSSMDSTDLVSIDYPLS
KPNSSPTDLEDKDCAPLILNSDECYQSFADPHSPTITSYENFTTPSPPKVTAIPEDILQMLKYN
SNLASPIDVKAMPLRRGFTSKGQSTRGAANKENW

hide sequence

RefSeq Acc Id:	XP_006252136 ⟸ XM_006252074
- Peptide Label:	isoform X1
- UniProtKB:	B2GUZ2 (UniProtKB/Swiss-Prot), A0A8I5Y7E4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNPIQSFHCKLRSLATVLDGETARLLRALDGEDSEDFEDSSARILCDLYSEVQTLKDDVNAHLD KARLESRESTHFIKAAKVLMKKNSADIIKLREFFQKYGYQARDKEDSACEHRVSNSSPGLAVCK DTQEPGVKQELSEPRVPRGSAPEEPLRSPQLSDFGLQRYMVSQGPANPRQETVSLKEDRASETT PAKDPSVQVLKTPRCALKMDDFECVTPKLEHFGISEYTMCLNEDYTMGLKNMKSIKSSPLSGVG GEAVETGPVTSDNSFAIPGPMIQQLEKNDVEYINSPLPPKFCTPGLKIPSSMDSTDLVSIDYPL SKPNSSPTDLEDKDCAPLILNSDECYQSFADPHSPTITSYENFTTPSPPKVTAIPEDILQMLKY NSNLASPIDVKAMPLRRGFTSKGQSTRGAANKENW hide sequence

RefSeq Acc Id:	XP_006252137 ⟸ XM_006252075
- Peptide Label:	isoform X1
- UniProtKB:	B2GUZ2 (UniProtKB/Swiss-Prot), A0A8I5Y7E4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNPIQSFHCKLRSLATVLDGETARLLRALDGEDSEDFEDSSARILCDLYSEVQTLKDDVNAHLD KARLESRESTHFIKAAKVLMKKNSADIIKLREFFQKYGYQARDKEDSACEHRVSNSSPGLAVCK DTQEPGVKQELSEPRVPRGSAPEEPLRSPQLSDFGLQRYMVSQGPANPRQETVSLKEDRASETT PAKDPSVQVLKTPRCALKMDDFECVTPKLEHFGISEYTMCLNEDYTMGLKNMKSIKSSPLSGVG GEAVETGPVTSDNSFAIPGPMIQQLEKNDVEYINSPLPPKFCTPGLKIPSSMDSTDLVSIDYPL SKPNSSPTDLEDKDCAPLILNSDECYQSFADPHSPTITSYENFTTPSPPKVTAIPEDILQMLKY NSNLASPIDVKAMPLRRGFTSKGQSTRGAANKENW hide sequence

Ensembl Acc Id:

ENSRNOP00000033626 ⟸ ENSRNOT00000032723

Ensembl Acc Id:

ENSRNOP00000087022 ⟸ ENSRNOT00000114233

Ensembl Acc Id:

ENSRNOP00000077309 ⟸ ENSRNOT00000117004

RefSeq Acc Id:	XP_063130480 ⟸ XM_063274410
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5Y7E4 (UniProtKB/TrEMBL), A0A8L2QHE9 (UniProtKB/TrEMBL), A6KHD2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130481 ⟸ XM_063274411
- Peptide Label:	isoform X3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2GUZ2-F1-model_v2	AlphaFold	B2GUZ2	1-419	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699725

Promoter ID:

EPDNEW_R10249

Type:

initiation region

Name:

Ska3_1

Description:

spindle and kinetochore associated complex subunit 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	38,096,874 - 38,096,934	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307201	AgrOrtholog
BioCyc Gene	G2FUF-13593	BioCyc
Ensembl Genes	ENSRNOG00000021847	Ensembl, UniProtKB/TrEMBL
	ENSRNOG00055012491	UniProtKB/Swiss-Prot
	ENSRNOG00060021400	UniProtKB/Swiss-Prot
	ENSRNOG00065029392	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000032723.5	UniProtKB/TrEMBL
	ENSRNOT00000114233.1	UniProtKB/TrEMBL
	ENSRNOT00000117004.1	UniProtKB/TrEMBL
	ENSRNOT00055021313	UniProtKB/Swiss-Prot
	ENSRNOT00060037117	UniProtKB/Swiss-Prot
	ENSRNOT00065050765	UniProtKB/Swiss-Prot
Gene3D-CATH	6.10.250.1400	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:9030107	IMAGE-MGC_LOAD
InterPro	SKA3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:361047	UniProtKB/TrEMBL
MGC_CLONE	MGC:187796	IMAGE-MGC_LOAD
NCBI Gene	361047	ENTREZGENE
PANTHER	PTHR48118	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ska3	PhenoGen
RatGTEx	ENSRNOG00000021847	RatGTEx
	ENSRNOG00055012491	RatGTEx
	ENSRNOG00060021400	RatGTEx
	ENSRNOG00065029392	RatGTEx
UniProt	A0A8I5Y7E4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A6I1_RAT	UniProtKB/TrEMBL
	A0A8L2QHE9	ENTREZGENE, UniProtKB/TrEMBL
	A6KHD2	ENTREZGENE, UniProtKB/TrEMBL
	B2GUZ2	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-02-12	Ska3	spindle and kinetochore associated complex subunit 3	RGD1307201	similar to chromosome 13 open reading frame 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1307201	similar to chromosome 13 open reading frame 3	RGD1307201_predicted	similar to chromosome 13 open reading frame 3 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1307201_predicted	similar to chromosome 13 open reading frame 3 (predicted)	LOC361047_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC361047_predicted	similar to chromosome 13 open reading frame 3 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD