Brox (BRO1 domain and CAAX motif containing)

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Gene: Brox (BRO1 domain and CAAX motif containing) Rattus norvegicus

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Symbol:

Brox

Name:

BRO1 domain and CAAX motif containing

RGD ID:

1307161

Description:

Predicted to be involved in mitotic nuclear membrane reassembly. Predicted to be located in nuclear envelope. Orthologous to human BROX (BRO1 domain and CAAX motif containing); INTERACTS WITH aconitine; bis(2-ethylhexyl) phthalate; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

BRO1 domain- and CAAX motif-containing protein; BRO1 domain-containing protein BROX; LOC305031; MGC114362; RGD1307161; similar to 0610010K06Rik protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BROX (BRO1 domain and CAAX motif containing)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther, PhylomeDB
Mus musculus (house mouse):	Brox (BRO1 domain and CAAX motif containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Brox (BRO1 domain and CAAX motif containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BROX (BRO1 domain and CAAX motif containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BROX (BRO1 domain and CAAX motif containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Brox (BRO1 domain and CAAX motif containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BROX (BRO1 domain and CAAX motif containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BROX (BRO1 domain and CAAX motif containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Brox (BRO1 domain and CAAX motif containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Brox (BRO1 domain and CAAX motif containing)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	BROX (BRO1 domain and CAAX motif containing)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	brox (BRO1 domain and CAAX motif containing)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	B0507.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	brox	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	97,451,736 - 97,471,598 (-)	NCBI		GRCr8
mRatBN7.2	13	94,920,107 - 94,940,189 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	94,920,112 - 94,940,227 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	97,425,477 - 97,445,264 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	98,825,287 - 98,845,074 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	96,007,437 - 96,027,220 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	101,677,896 - 101,697,743 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	101,677,902 - 101,697,684 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	100,886,368 - 100,906,452 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	99,319,507 - 99,339,291 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	99,508,442 - 99,528,227 (-)	NCBI
Celera	13	94,447,203 - 94,466,862 (-)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

Loeys-Dietz syndrome 4 (ISO)

parathyroid carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

aconitine (EXP)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP)

dioxygen (ISO)

diquat (ISO)

doxorubicin (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenthion (ISO)

fipronil (EXP)

formaldehyde (ISO)

indometacin (ISO)

inulin (ISO)

ivermectin (ISO)

methidathion (ISO)

methyl methanesulfonate (ISO)

ozone (ISO)

perfluorooctane-1-sulfonic acid (ISO)

poly(I:C) (EXP)

resorcinol (ISO)

sodium arsenite (ISO)

Soman (EXP)

sulforaphane (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitotic nuclear membrane reassembly (ISO,ISS)

Cellular Component

nuclear envelope (ISO,ISS)

nuclear membrane (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:19056867	PMID:19199708	PMID:23376485	PMID:23533145

Genomics

Comparative Map Data

Brox
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	97,451,736 - 97,471,598 (-)	NCBI		GRCr8
mRatBN7.2	13	94,920,107 - 94,940,189 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	94,920,112 - 94,940,227 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	97,425,477 - 97,445,264 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	98,825,287 - 98,845,074 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	96,007,437 - 96,027,220 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	101,677,896 - 101,697,743 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	101,677,902 - 101,697,684 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	100,886,368 - 100,906,452 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	99,319,507 - 99,339,291 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	99,508,442 - 99,528,227 (-)	NCBI
Celera	13	94,447,203 - 94,466,862 (-)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

BROX
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	222,712,564 - 222,735,187 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	222,712,553 - 222,735,196 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	222,885,906 - 222,908,529 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	220,952,529 - 220,972,732 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	196,105,074 - 196,125,277 (+)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI
HuRef	1	193,560,289 - 193,580,492 (+)	NCBI		HuRef
CHM1_1	1	224,158,972 - 224,179,175 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	221,946,320 - 221,968,943 (+)	NCBI		T2T-CHM13v2.0

Brox
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	183,057,916 - 183,078,839 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	183,057,916 - 183,078,813 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	183,276,352 - 183,297,298 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	183,276,352 - 183,297,269 (-)	Ensembl	GRCm38		mm10	GRCm38
Celera	1	190,277,448 - 190,298,022 (-)	NCBI		Celera
Cytogenetic Map	1	H5	NCBI

Brox
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955520	1,797,657 - 1,818,708 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955520	1,797,657 - 1,819,359 (-)	NCBI	ChiLan1.0	ChiLan1.0

BROX
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	26,586,043 - 26,608,455 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	26,539,467 - 26,561,876 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	198,385,748 - 198,408,408 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	203,399,224 - 203,421,920 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	203,399,224 - 203,421,920 (+)	Ensembl	panpan1.1		panPan2

BROX
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	16,971,449 - 16,990,673 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	16,971,504 - 16,990,372 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	17,027,790 - 17,047,007 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	17,017,951 - 17,039,102 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	17,017,765 - 17,040,508 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	17,023,182 - 17,044,114 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	17,372,045 - 17,391,207 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	17,667,450 - 17,688,535 (+)	NCBI		UU_Cfam_GSD_1.0

Brox
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	54,717,189 - 54,741,113 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936526	6,496 - 30,743 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936526	6,185 - 30,108 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BROX
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	11,466,004 - 11,486,974 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	11,466,173 - 11,486,983 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	13,621,400 - 13,636,473 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BROX
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	6,835,448 - 6,858,097 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	6,834,584 - 6,858,052 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	7,073,830 - 7,096,754 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Brox
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624835	5,240,333 - 5,261,416 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624835	5,240,643 - 5,261,299 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Brox
96 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	863
Count of miRNA genes:	316
Interacting mature miRNAs:	417
Transcripts:	ENSRNOT00000004949
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	20605871	101339738	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	66451204	106807694	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	65103704	106807694	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	30395351	101056920	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	56056920	101056920	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	80753256	106807694	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	74023918	97213863	Rat
1641901	Alcrsp6	Alcohol response QTL 6			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	13	52362171	97362171	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	65103704	106807694	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	61825626	106807694	Rat
1581570	Eae17	Experimental allergic encephalomyelitis QTL 17	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	8897350	101631289	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	101056920	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	74862117	101339893	Rat

Markers in Region

RH102121

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	94,923,059 - 94,923,193 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	101,680,849 - 101,680,982	NCBI	Rnor6.0
Rnor_5.0	13	100,889,321 - 100,889,454	UniSTS	Rnor5.0
RGSC_v3.4	13	99,322,455 - 99,322,588	UniSTS	RGSC3.4
Celera	13	94,450,151 - 94,450,284	UniSTS
Cytogenetic Map	13	q26	UniSTS

RH138423

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	94,921,598 - 94,921,742 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	101,679,388 - 101,679,531	NCBI	Rnor6.0
Rnor_5.0	13	100,887,860 - 100,888,003	UniSTS	Rnor5.0
RGSC_v3.4	13	99,320,994 - 99,321,137	UniSTS	RGSC3.4
Celera	13	94,448,690 - 94,448,833	UniSTS
Cytogenetic Map	13	q26	UniSTS

RH129815

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	94,920,173 - 94,920,392 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	101,677,963 - 101,678,181	NCBI	Rnor6.0
Rnor_5.0	13	100,886,435 - 100,886,653	UniSTS	Rnor5.0
RGSC_v3.4	13	99,319,569 - 99,319,787	UniSTS	RGSC3.4
Celera	13	94,447,265 - 94,447,483	UniSTS
RH 3.4 Map	13	653.6	UniSTS
Cytogenetic Map	13	q26	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC097348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000078834 ⟹ ENSRNOP00000073617

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	94,920,112 - 94,939,942 (-)	Ensembl
Rnor_6.0 Ensembl	13	101,677,902 - 101,697,684 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106784 ⟹ ENSRNOP00000089243

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	94,920,112 - 94,940,227 (-)	Ensembl

RefSeq Acc Id:

NM_001025669 ⟹ NP_001020840

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	97,451,736 - 97,471,519 (-)	NCBI
mRatBN7.2	13	94,920,112 - 94,939,899 (-)	NCBI
Rnor_6.0	13	101,677,901 - 101,697,684 (-)	NCBI
Rnor_5.0	13	100,886,368 - 100,906,452 (-)	NCBI
RGSC_v3.4	13	99,319,507 - 99,339,291 (-)	RGD
Celera	13	94,447,203 - 94,466,862 (-)	RGD

Sequence:

show sequence

CTCCGTCCCACCTTCCCTTTCCTTCAGCAGGAAGAGTGGGCCTTACGGACTCTGAGGTCTCCGA
GCACATCGCGTGAAGATGACCCACTGGTTTCATAGGAACCCATTAAAAGCTACAGCTCCTGTGT
CCTTCAACTACTATGGCATGATCACTGGGCCTCCTGCTTCAAAGATTTGCAATGATTTGAGATC
CGCCAGGACTCGGCTCCTCGAATTGTTCACTGATTTGAGCTGTAATCCAGAAACGATGAAGAAT
GCCGCAGACCTGTATTTCTCTCTTTTACAAGGTTTCATAAATTCAGTGGGTGACTCCACCCAGG
AAAGCAAATTACGATACATTCAGAATTTCAAATGGACTGATACATTACAAGGACATGTTCCGAG
TGCCCAGCAGGATGCTGTTTTCGAACTGATTTCCATGGGATTTAATGTAGCGCTGTGGTATACA
AAATATGCTTCAAGATTGGCTGGAAAAGAAAACATAACAGAAGATGAAGCAAAAGAAGTTCACC
GAAGCCTAAAAATTGCAGCTGGGATTTTTAAACATTTAAAGGAAAGTCATATTCCCAAACTTCT
GACACCAGCAGAAAAGGGGCGGGATTTAGAGGCGCGGCTCATCGATGCGTACATCATCCAGTGC
CAGGCCGAGGCTCAGGAAGTGACCATCGCCCGAGCAATCGAGCTGAAGCACGCTCCGGGGCTGA
TCGCGGCACTCGCGTACGAAACAGCCAGCTTCTATCAGAAAGCAGATCATACTTTGTCCAGTTT
GGAGCCTGCACACTCTGCTAAGTGGAGAAAATACCTTCACCTGAAGATGTGCTTCTACACGGCT
TATGCGTACTGCTACCATGGCCAGACTCTGTTGGCGAGCGATAAATGTGGAGAAGCAATCAGAT
CTCTCCAAGAAGCAGAAAAATTGTACGCAGAGGCAGAAGCCCTGTGCAAAGAGTACGGGGAGAC
CAAAGGGCCAGGGCCAACGGCCAAGCCATCAGGACACTTGTTCTTTCGGAAGCTCGGAAGCCTT
GTGAAGAACACCCTGGACAAGTGTCAGAGGGAAAATGGCTTCATTTACTTTCAAAAAATTCCAA
CAGAAGCCCCACAACTGGAACTGAAAGCGAACTATGGCCTGGTAGAGCCTGTGCCTTTTGAATT
TCCTCCTATGAGTGCTCTCTGGACACCAGAAGCCTTGGCTGCATTTGATCTCACCAAGAGACCC
AAGGATGACAGTATCAAACCCAAACCGGAAGAGGAAGTGAAACCTGTAAAAGAACCAGATATCA
AACCTCAGAAAGACACTGGGTGCTCCGTCTCATAAGAATGCCACTCACTTAGAAATCTCTGCTG
GTCCATAAGAGAAACCTCGGGACTTCAGTTCACCTTTTTGATTCCTCTGAAGCCCATTGGATGA
TTGTCAGCTTTAGAGGGACTTGGCCTTTAGTTTATTTATTCTTGGTTTTTAACATAGAGGCATT
TCATGCTTTTGTTTCGGGCTCTGCTTTACAATGAGGACATTTGGATGGGTTGGTTTTTATGCCT
CTAACGAGCGTCTATGGGGTGGGGGGTGGAACTTTTTTGAACTCTAGATAGTAAGTTTCATGTT
AATGTTTTTCTACTTTCACAAAAACGTTTATTCTTCTTGCTTGATACCAGAAGAATGCTTTGAA
AAGAGATGAGTTCGCCTCTCCTCACCAACTTGTCAGATCTGACTCTAGCTCAGTCTTCTGGTAG
GGAAACTGAATTGCAGTTAAATCAGAAAACCTCAGACCAAATTCTTTCCTTATACTTAACCAGA
GTCTATAATTACTAGAAATCAGTGTCTTCAAGAACGTGTAAGGTTCTTGGAAATCGGCAGTATG
GGCCTGTGCCCCTCAGCCTGCTTCCCAGCTTAGTCCGTGCTGTTCCTGCCACCCTCAGTACTGA
GACAGTGGTTTGTTTTGGTTTTTATTAGTACCTTTTCTAATGGATTTTTTACTTAAGGGGTAAA
GCTTTGTACTAGCATTTAGAGTGCTTCTGTGTAGAGAGAGAAAAAGAATGGACGTGTGTTTTAA
AGAAGTAAAATGTTGCATGTTGTAAAGAAAGTCTTTGCAAACTCAACCAAGACAGGTTGTCCTG
GATCGCACTGGTAATTTCTTTGTTAGAAGTGTTTAAGAAAATGCCTTTGTTACCTGATTTGGGT
GTACATTGTGTTTTTAACATGGTTTTCTTCCATATGTATCCTATCAGAATTGTTTGGCATTAGG
CCAAAGGCCATAGCAACAGAAGGTTAGGATATAGACACTCAAACTATGATCTTTAAAGTGGGTT
GTATCACTTAAAGGACTTGGTTATATCCATAAACTGGGAATGGTGGCTGTGTGATACTTCATCA
AGTAACAGATGTGGGTGTATCCTACTTGGTTACTCTCCTGGGATGTTAACTTCCTTTTCTAGGT
GACAGATTTCTTCACATAATAGGAATAATAATGTATGTGAGAACTTACTCTGTGCCAGGCAGTG
TGTAGGCACATACACAGACCACTGCATCCCCTTAGCAGCCCTGTGAGAACACATCGGTCTGCAT
AAAGCATTGAAACAGGAATATGCATCTCGTGATGAGGAATGATCGATTATACCTATCAATTAAG
ATAAATCAATAAATCATATACCATAGTTTATATGCCTTTGAAAAGCTACATATAATCACTAAGG
GTTTTTTCTTAATAAGTTAAAATGTTAGTTACAGCCTGCAGTGTCTAACATTTGAGGCTGCAGC
TTTCAGAACACTTGGAGTAACTACTGAATGGGCATTGAGCTTTCTTTTGCTGCCTATAGGAAAA
CAGTACCTTATTAAGTTTTACCCTTCCTACAGTCACTTGTTAAATGGCAGTTACTGACAAAACT
TTAACAAGTACTTGCTGCTGCCTGTCTACGCTCTCCCTGCCTAAAGGACCTGTTCCATGCACTA
ATCCTCATTAACCTAGGTAGTCTCAGTGTGGTTTCTGTGGACTAAACTGCCATTCATGAAATGG
GAACACATACTGTGTCCGGCGCTTCTGTAAGGGGCAGTAAATGCTGGTGTTAAAACCCATACTT
GGCAGTGTTCACATGATCGCATGAGCAGTCACAGTTGACTGCAGAAGTAACACCAGAAGCCTAT
CCCGTAACGTGAGGTTTGGAAGAGGTACCGGGAGTCTGGGGAGACACCAAAAAGGAGCACTGCA
CGAAGGCTGTGGAGAGATGAAACCGGACATTGATGATGCATGTATTTCAGACCAGGCAAGGACA
GCTCACATGCTACTTCTGTACAGTGTTTATATGATTTATCTTTTTATTTATGATAATAAATTTT
ACTTACATATTCAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006250354 ⟹ XP_006250416

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	97,451,736 - 97,471,598 (-)	NCBI
mRatBN7.2	13	94,920,107 - 94,940,189 (-)	NCBI
Rnor_6.0	13	101,677,896 - 101,697,743 (-)	NCBI
Rnor_5.0	13	100,886,368 - 100,906,452 (-)	NCBI

Sequence:

show sequence

GGCCGCTCTAGCCCAGTTATCTCGGTGCTACTGGGCTCCTTCCTTGTCTCGCTGGCGGACTCCG
TCCCACCTTCCCTTTCCTTCAGCAGGAAGAGTGGGCCTTACGGACTCTGAGGTCTCCGAGCACA
TCGCGTGAAGATGACCCACTGGTTTCATAGGAACCCATTAAAAGCTACAGCTCCTGTGTCCTTC
AACTACTATGGCATGATCACTGGGCCTCCTGCTTCAAAGATTTGCAATGCCCAGCAGGATGCTG
TTTTCGAACTGATTTCCATGGGATTTAATGTAGCGCTGTGGTATACAAAATATGCTTCAAGATT
GGCTGGAAAAGAAAACATAACAGAAGATGAAGCAAAAGAAGTTCACCGAAGCCTAAAAATTGCA
GCTGGGATTTTTAAACATTTAAAGGAAAGTCATATTCCCAAACTTCTGACACCAGCAGAAAAGG
GGCGGGATTTAGAGGCGCGGCTCATCGATGCGTACATCATCCAGTGCCAGGCCGAGGCTCAGGA
AGTGACCATCGCCCGAGCAATCGAGCTGAAGCACGCTCCGGGGCTGATCGCGGCACTCGCGTAC
GAAACAGCCAGCTTCTATCAGAAAGCAGATCATACTTTGTCCAGTTTGGAGCCTGCACACTCTG
CTAAGTGGAGAAAATACCTTCACCTGAAGATGTGCTTCTACACGGCTTATGCGTACTGCTACCA
TGGCCAGACTCTGTTGGCGAGCGATAAATGTGGAGAAGCAATCAGATCTCTCCAAGAAGCAGAA
AAATTGTACGCAGAGGCAGAAGCCCTGTGCAAAGAGTACGGGGAGACCAAAGGGCCAGGGCCAA
CGGCCAAGCCATCAGGACACTTGTTCTTTCGGAAGCTCGGAAGCCTTGTGAAGAACACCCTGGA
CAAGTGTCAGAGGGAAAATGGCTTCATTTACTTTCAAAAAATTCCAACAGAAGCCCCACAACTG
GAACTGAAAGCGAACTATGGCCTGGTAGAGCCTGTGCCTTTTGAATTTCCTCCTATGAGTGCTC
TCTGGACACCAGAAGCCTTGGCTGCATTTGATCTCACCAAGAGACCCAAGGATGACAGTATCAA
ACCCAAACCGGAAGAGGAAGTGAAACCTGTAAAAGAACCAGATATCAAACCTCAGAAAGACACT
GGGTGCTCCGTCTCATAAGAATGCCACTCACTTAGAAATCTCTGCTGGTCCATAAGAGAAACCT
CGGGACTTCAGTTCACCTTTTTGATTCCTCTGAAGCCCATTGGATGATTGTCAGCTTTAGAGGG
ACTTGGCCTTTAGTTTATTTATTCTTGGTTTTTAACATAGAGGCATTTCATGCTTTTGTTTCGG
GCTCTGCTTTACAATGAGGACATTTGGATGGGTTGGTTTTTATGCCTCTAACGAGCGTCTATGG
GGTGGGGGGTGGAACTTTTTTGAACTCTAGATAGTAAGTTTCATGTTAATGTTTTTCTACTTTC
ACAAAAACGTTTATTCTTCTTGCTTGATACCAGAAGAATGCTTTGAAAAGAGATGAGTTCGCCT
CTCCTCACCAACTTGTCAGATCTGACTCTAGCTCAGTCTTCTGGTAGGGAAACTGAATTGCAGT
TAAATCAGAAAACCTCAGACCAAATTCTTTCCTTATACTTAACCAGAGTCTATAATTACTAGAA
ATCAGTGTCTTCAAGAACGTGTAAGGTTCTTGGAAATCGGCAGTATGGGCCTGTGCCCCTCAGC
CTGCTTCCCAGCTTAGTCCGTGCTGTTCCTGCCACCCTCAGTACTGAGACAGTGGTTTGTTTTG
GTTTTTATTAGTACCTTTTCTAATGGATTTTTTACTTAAGGGGTAAAGCTTTGTACTAGCATTT
AGAGTGCTTCTGTGTAGAGAGAGAAAAAGAATGGACGTGTGTTTTAAAGAAGTAAAATGTTGCA
TGTTGTAAAGAAAGTCTTTGCAAACTCAACCAAGACAGGTTGTCCTGGATCGCACTGGTAATTT
CTTTGTTAGAAGTGTTTAAGAAAATGCCTTTGTTACCTGATTTGGGTGTACATTGTGTTTTTAA
CATGGTTTTCTTCCATATGTATCCTATCAGAATTGTTTGGCATTAGGCCAAAGGCCATAGCAAC
AGAAGGTTAGGATATAGACACTCAAACTATGATCTTTAAAGTGGGTTGTATCACTTAAAGGACT
TGGTTATATCCATAAACTGGGAATGGTGGCTGTGTGATACTTCATCAAGTAACAGATGTGGGTG
TATCCTACTTGGTTACTCTCCTGGGATGTTAACTTCCTTTTCTAGGTGACAGATTTCTTCACAT
AATAGGAATAATAATGTATGTGAGAACTTACTCTGTGCCAGGCAGTGTGTAGGCACATACACAG
ACCACTGCATCCCCTTAGCAGCCCTGTGAGAACACATCGGTCTGCATAAAGCATTGAAACAGGA
ATATGCATCTCGTGATGAGGAATGATCGATTATACCTATCAATTAAGATAAATCAATAAATCAT
ATACCATAGTTTATATGCCTTTGAAAAGCTACATATAATCACTAAGGGTTTTTTCTTAATAAGT
TAAAATGTTAGTTACAGCCTGCAGTGTCTAACATTTGAGGCTGCAGCTTTCAGAACACTTGGAG
TAACTACTGAATGGGCATTGAGCTTTCTTTTGCTGCCTATAGGAAAACAGTACCTTATTAAGTT
TTACCCTTCCTACAGTCACTTGTTAAATGGCAGTTACTGACAAAACTTTAACAAGTACTTGCTG
CTGCCTGTCTACGCTCTCCCTGCCTAAAGGACCTGTTCCATGCACTAATCCTCATTAACCTAGG
TAGTCTCAGTGTGGTTTCTGTGGACTAAACTGCCATTCATGAAATGGGAACACATACTGTGTCC
GGCGCTTCTGTAAGGGGCAGTAAATGCTGGTGTTAAAACCCATACTTGGCAGTGTTCACATGAT
CGCATGAGCAGTCACAGTTGACTGCAGAAGTAACACCAGAAGCCTATCCCGTAACGTGAGGTTT
GGAAGAGGTACCGGGAGTCTGGGGAGACACCAAAAAGGAGCACTGCACGAAGGCTGTGGAGAGA
TGAAACCGGACATTGATGATGCATGTATTTCAGACCAGGCAAGGACAGCTCACATGCTACTTCT
GTACAGTGTTTATATGATTTATCTTTTTATTTATGATAATAAATTTTACTTACATATTCACTGG
A

hide sequence

RefSeq Acc Id:

XM_017598835 ⟹ XP_017454324

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	97,451,736 - 97,471,349 (-)	NCBI
mRatBN7.2	13	94,920,107 - 94,939,759 (-)	NCBI
Rnor_6.0	13	101,677,896 - 101,697,611 (-)	NCBI

Sequence:

show sequence

CAGAAAGCGTGTGAGTTTGAGATCTCCCTCCCCTCTGGTCCCTGAACTTCAGTGGAAGGTCATC
CCCTTCCCTACCATCACCCTTGGATGGTAGTCAGTGGAAGAATCGATGGTGTTAGCGTCTAGAT
CGGCCGACTCTCCTAGCCCGGCGTCGGCTTTGGTTGCTGCTAGAGGGCTTATTACATGCGGAAC
AGTGGCAGTCATCTGTTTGTCCTTCCGAGGTTGACAGGGTCGGAGTGCCACCCTAAGACCTGAT
CGCGATCCTGGAGGCCGGTCGTGGGGTCGCGGCCGGCTGACTTAGTAGGAGGACACAGGGAGGA
AGAGGCCTGACCGTAAACAGGAAGTGGGCACGGGCAATATCTAGATGACAGAGCACATCGCGTG
AAGATGACCCACTGGTTTCATAGGAACCCATTAAAAGCTACAGCTCCTGTGTCCTTCAACTACT
ATGGCATGATCACTGGGCCTCCTGCTTCAAAGATTTGCAATGATTTGAGATCCGCCAGGACTCG
GCTCCTCGAATTGTTCACTGATTTGAGCTGTAATCCAGAAACGATGAAGAATGCCGCAGACCTG
TATTTCTCTCTTTTACAAGGTTTCATAAATTCAGTGGGTGACTCCACCCAGGAAAGCAAATTAC
GATACATTCAGAATTTCAAATGGACTGATACATTACAAGGACATGTTCCGAGTGCCCAGCAGGA
TGCTGTTTTCGAACTGATTTCCATGGGATTTAATGTAGCGCTGTGGTATACAAAATATGCTTCA
AGATTGGCTGGAAAAGAAAACATAACAGAAGATGAAGCAAAAGAAGTTCACCGAAGCCTAAAAA
TTGCAGCTGGGATTTTTAAACATTTAAAGGAAAGTCATATTCCCAAACTTCTGACACCAGCAGA
AAAGGGGCGGGATTTAGAGGCGCGGCTCATCGATGCGTACATCATCCAGTGCCAGGCCGAGGCT
CAGGAAGTGACCATCGCCCGAGCAATCGAGCTGAAGCACGCTCCGGGGCTGATCGCGGCACTCG
CGTACGAAACAGCCAGCTTCTATCAGAAAGCAGATCATACTTTGTCCAGTTTGGAGCCTGCACA
CTCTGCTAAGTGGAGAAAATACCTTCACCTGAAGATGTGCTTCTACACGGCTTATGCGTACTGC
TACCATGGCCAGACTCTGTTGGCGAGCGATAAATGTGGAGAAGCAATCAGATCTCTCCAAGAAG
CAGAAAAATTGTACGCAGAGGCAGAAGCCCTGTGCAAAGAGTACGGGGAGACCAAAGGGCCAGG
GCCAACGGCCAAGCCATCAGGACACTTGTTCTTTCGGAAGCTCGGAAGCCTTGTGAAGAACACC
CTGGACAAGTGTCAGAGGGAAAATGGCTTCATTTACTTTCAAAAAATTCCAACAGAAGCCCCAC
AACTGGAACTGAAAGCGAACTATGGCCTGGTAGAGCCTGTGCCTTTTGAATTTCCTCCTATGAG
TGCTCTCTGGACACCAGAAGCCTTGGCTGCATTTGATCTCACCAAGAGACCCAAGGATGACAGT
ATCAAACCCAAACCGGAAGAGGAAGTGAAACCTGTAAAAGAACCAGATATCAAACCTCAGAAAG
ACACTGGGTGCTCCGTCTCATAAGAATGCCACTCACTTAGAAATCTCTGCTGGTCCATAAGAGA
AACCTCGGGACTTCAGTTCACCTTTTTGATTCCTCTGAAGCCCATTGGATGATTGTCAGCTTTA
GAGGGACTTGGCCTTTAGTTTATTTATTCTTGGTTTTTAACATAGAGGCATTTCATGCTTTTGT
TTCGGGCTCTGCTTTACAATGAGGACATTTGGATGGGTTGGTTTTTATGCCTCTAACGAGCGTC
TATGGGGTGGGGGGTGGAACTTTTTTGAACTCTAGATAGTAAGTTTCATGTTAATGTTTTTCTA
CTTTCACAAAAACGTTTATTCTTCTTGCTTGATACCAGAAGAATGCTTTGAAAAGAGATGAGTT
CGCCTCTCCTCACCAACTTGTCAGATCTGACTCTAGCTCAGTCTTCTGGTAGGGAAACTGAATT
GCAGTTAAATCAGAAAACCTCAGACCAAATTCTTTCCTTATACTTAACCAGAGTCTATAATTAC
TAGAAATCAGTGTCTTCAAGAACGTGTAAGGTTCTTGGAAATCGGCAGTATGGGCCTGTGCCCC
TCAGCCTGCTTCCCAGCTTAGTCCGTGCTGTTCCTGCCACCCTCAGTACTGAGACAGTGGTTTG
TTTTGGTTTTTATTAGTACCTTTTCTAATGGATTTTTTACTTAAGGGGTAAAGCTTTGTACTAG
CATTTAGAGTGCTTCTGTGTAGAGAGAGAAAAAGAATGGACGTGTGTTTTAAAGAAGTAAAATG
TTGCATGTTGTAAAGAAAGTCTTTGCAAACTCAACCAAGACAGGTTGTCCTGGATCGCACTGGT
AATTTCTTTGTTAGAAGTGTTTAAGAAAATGCCTTTGTTACCTGATTTGGGTGTACATTGTGTT
TTTAACATGGTTTTCTTCCATATGTATCCTATCAGAATTGTTTGGCATTAGGCCAAAGGCCATA
GCAACAGAAGGTTAGGATATAGACACTCAAACTATGATCTTTAAAGTGGGTTGTATCACTTAAA
GGACTTGGTTATATCCATAAACTGGGAATGGTGGCTGTGTGATACTTCATCAAGTAACAGATGT
GGGTGTATCCTACTTGGTTACTCTCCTGGGATGTTAACTTCCTTTTCTAGGTGACAGATTTCTT
CACATAATAGGAATAATAATGTATGTGAGAACTTACTCTGTGCCAGGCAGTGTGTAGGCACATA
CACAGACCACTGCATCCCCTTAGCAGCCCTGTGAGAACACATCGGTCTGCATAAAGCATTGAAA
CAGGAATATGCATCTCGTGATGAGGAATGATCGATTATACCTATCAATTAAGATAAATCAATAA
ATCATATACCATAGTTTATATGCCTTTGAAAAGCTACATATAATCACTAAGGGTTTTTTCTTAA
TAAGTTAAAATGTTAGTTACAGCCTGCAGTGTCTAACATTTGAGGCTGCAGCTTTCAGAACACT
TGGAGTAACTACTGAATGGGCATTGAGCTTTCTTTTGCTGCCTATAGGAAAACAGTACCTTATT
AAGTTTTACCCTTCCTACAGTCACTTGTTAAATGGCAGTTACTGACAAAACTTTAACAAGTACT
TGCTGCTGCCTGTCTACGCTCTCCCTGCCTAAAGGACCTGTTCCATGCACTAATCCTCATTAAC
CTAGGTAGTCTCAGTGTGGTTTCTGTGGACTAAACTGCCATTCATGAAATGGGAACACATACTG
TGTCCGGCGCTTCTGTAAGGGGCAGTAAATGCTGGTGTTAAAACCCATACTTGGCAGTGTTCAC
ATGATCGCATGAGCAGTCACAGTTGACTGCAGAAGTAACACCAGAAGCCTATCCCGTAACGTGA
GGTTTGGAAGAGGTACCGGGAGTCTGGGGAGACACCAAAAAGGAGCACTGCACGAAGGCTGTGG
AGAGATGAAACCGGACATTGATGATGCATGTATTTCAGACCAGGCAAGGACAGCTCACATGCTA
CTTCTGTACAGTGTTTATATGATTTATCTTTTTATTTATGATAATAAATTTTACTTACATATTC
ACTGGA

hide sequence

RefSeq Acc Id:

XM_063272389 ⟹ XP_063128459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	97,451,736 - 97,471,504 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020840	(Get FASTA)	NCBI Sequence Viewer
	XP_006250416	(Get FASTA)	NCBI Sequence Viewer
	XP_017454324	(Get FASTA)	NCBI Sequence Viewer
	XP_063128459	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH97348	(Get FASTA)	NCBI Sequence Viewer
	EDL94888	(Get FASTA)	NCBI Sequence Viewer
	EDL94889	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000073617.1
	ENSRNOP00000089243.1
	ENSRNOP00055016411
	ENSRNOP00060009814
	ENSRNOP00065023741
GenBank Protein	Q4V8K5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020840 ⟸ NM_001025669

- UniProtKB:

Q4V8K5 (UniProtKB/Swiss-Prot), A6JGN3 (UniProtKB/TrEMBL), A0A8I6ACA4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTHWFHRNPLKATAPVSFNYYGMITGPPASKICNDLRSARTRLLELFTDLSCNPETMKNAADLY
FSLLQGFINSVGDSTQESKLRYIQNFKWTDTLQGHVPSAQQDAVFELISMGFNVALWYTKYASR
LAGKENITEDEAKEVHRSLKIAAGIFKHLKESHIPKLLTPAEKGRDLEARLIDAYIIQCQAEAQ
EVTIARAIELKHAPGLIAALAYETASFYQKADHTLSSLEPAHSAKWRKYLHLKMCFYTAYAYCY
HGQTLLASDKCGEAIRSLQEAEKLYAEAEALCKEYGETKGPGPTAKPSGHLFFRKLGSLVKNTL
DKCQRENGFIYFQKIPTEAPQLELKANYGLVEPVPFEFPPMSALWTPEALAAFDLTKRPKDDSI
KPKPEEEVKPVKEPDIKPQKDTGCSVS

hide sequence

RefSeq Acc Id:

XP_006250416 ⟸ XM_006250354

- Peptide Label:

isoform X2

- Sequence:

show sequence

MTHWFHRNPLKATAPVSFNYYGMITGPPASKICNAQQDAVFELISMGFNVALWYTKYASRLAGK
ENITEDEAKEVHRSLKIAAGIFKHLKESHIPKLLTPAEKGRDLEARLIDAYIIQCQAEAQEVTI
ARAIELKHAPGLIAALAYETASFYQKADHTLSSLEPAHSAKWRKYLHLKMCFYTAYAYCYHGQT
LLASDKCGEAIRSLQEAEKLYAEAEALCKEYGETKGPGPTAKPSGHLFFRKLGSLVKNTLDKCQ
RENGFIYFQKIPTEAPQLELKANYGLVEPVPFEFPPMSALWTPEALAAFDLTKRPKDDSIKPKP
EEEVKPVKEPDIKPQKDTGCSVS

hide sequence

RefSeq Acc Id:	XP_017454324 ⟸ XM_017598835
- Peptide Label:	isoform X1
- UniProtKB:	Q4V8K5 (UniProtKB/Swiss-Prot), A6JGN3 (UniProtKB/TrEMBL), A0A8I6ACA4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTHWFHRNPLKATAPVSFNYYGMITGPPASKICNDLRSARTRLLELFTDLSCNPETMKNAADLY FSLLQGFINSVGDSTQESKLRYIQNFKWTDTLQGHVPSAQQDAVFELISMGFNVALWYTKYASR LAGKENITEDEAKEVHRSLKIAAGIFKHLKESHIPKLLTPAEKGRDLEARLIDAYIIQCQAEAQ EVTIARAIELKHAPGLIAALAYETASFYQKADHTLSSLEPAHSAKWRKYLHLKMCFYTAYAYCY HGQTLLASDKCGEAIRSLQEAEKLYAEAEALCKEYGETKGPGPTAKPSGHLFFRKLGSLVKNTL DKCQRENGFIYFQKIPTEAPQLELKANYGLVEPVPFEFPPMSALWTPEALAAFDLTKRPKDDSI KPKPEEEVKPVKEPDIKPQKDTGCSVS hide sequence

Ensembl Acc Id:

ENSRNOP00000073617 ⟸ ENSRNOT00000078834

Ensembl Acc Id:

ENSRNOP00000089243 ⟸ ENSRNOT00000106784

RefSeq Acc Id:	XP_063128459 ⟸ XM_063272389
- Peptide Label:	isoform X2

Protein Domains

BRO1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4V8K5-F1-model_v2	AlphaFold	Q4V8K5	1-411	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699084

Promoter ID:

EPDNEW_R9608

Type:

initiation region

Name:

Brox_1

Description:

BRO1 domain and CAAX motif containing

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	101,697,698 - 101,697,758	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307161	AgrOrtholog
BioCyc Gene	G2FUF-17043	BioCyc
Ensembl Genes	ENSRNOG00000052963	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055011968	UniProtKB/Swiss-Prot
	ENSRNOG00060007841	UniProtKB/Swiss-Prot
	ENSRNOG00065017859	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000078834.2	UniProtKB/Swiss-Prot
	ENSRNOT00000106784.1	UniProtKB/TrEMBL
	ENSRNOT00055020352	UniProtKB/Swiss-Prot
	ENSRNOT00060012938	UniProtKB/Swiss-Prot
	ENSRNOT00065029896	UniProtKB/Swiss-Prot
Gene3D-CATH	1.25.40.280	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7460070	IMAGE-MGC_LOAD
InterPro	BRO1_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	BRO1_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	BROX	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:305031	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:114362	IMAGE-MGC_LOAD
NCBI Gene	305031	ENTREZGENE
PANTHER	BRO1 DOMAIN-CONTAINING PROTEIN BROX	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR23032	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	BRO1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Brox	PhenoGen
PROSITE	BRO1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000052963	RatGTEx
	ENSRNOG00055011968	RatGTEx
	ENSRNOG00060007841	RatGTEx
	ENSRNOG00065017859	RatGTEx
SMART	BRO1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6ACA4	ENTREZGENE, UniProtKB/TrEMBL
	A6JGN3	ENTREZGENE, UniProtKB/TrEMBL
	BROX_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-05-25	Brox	BRO1 domain and CAAX motif containing	RGD1307161	similar to 0610010K06Rik protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1307161	similar to 0610010K06Rik protein	RGD1307161_predicted	similar to 0610010K06Rik protein (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1307161_predicted	similar to 0610010K06Rik protein (predicted)	LOC305031_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC305031_predicted	similar to 0610010K06Rik protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar