Insm2 (INSM transcriptional repressor 2) - Rat Genome Database

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Pathways
Gene: Insm2 (INSM transcriptional repressor 2) Rattus norvegicus
Analyze
Symbol: Insm2
Name: INSM transcriptional repressor 2
RGD ID: 1306949
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; neuron differentiation; and regulation of cell cycle process. Predicted to be part of transcription repressor complex. Predicted to be active in nucleus. Orthologous to human INSM2 (INSM transcriptional repressor 2); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: insulinoma-associated 2; insulinoma-associated protein 2; LOC314131
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2672,973,861 - 72,976,453 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx673,395,488 - 73,398,078 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0673,701,858 - 73,704,448 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0673,129,368 - 73,131,958 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0676,380,681 - 76,386,240 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl676,383,446 - 76,384,933 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0685,914,501 - 85,919,811 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4675,846,090 - 75,847,587 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1675,849,225 - 75,850,715 (+)NCBI
Celera671,812,955 - 71,818,504 (+)NCBICelera
Cytogenetic Map6q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Insm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2672,973,861 - 72,976,453 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx673,395,488 - 73,398,078 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0673,701,858 - 73,704,448 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0673,129,368 - 73,131,958 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0676,380,681 - 76,386,240 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl676,383,446 - 76,384,933 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0685,914,501 - 85,919,811 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4675,846,090 - 75,847,587 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1675,849,225 - 75,850,715 (+)NCBI
Celera671,812,955 - 71,818,504 (+)NCBICelera
Cytogenetic Map6q23NCBI
INSM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381435,534,164 - 35,537,054 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1435,534,164 - 35,537,054 (+)EnsemblGRCh38hg38GRCh38
GRCh371436,003,370 - 36,006,260 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361435,072,999 - 35,076,011 (+)NCBINCBI36Build 36hg18NCBI36
Build 341435,072,998 - 35,076,011NCBI
Celera1415,867,108 - 15,870,120 (+)NCBICelera
Cytogenetic Map14q13.2NCBI
HuRef1416,117,138 - 16,120,150 (+)NCBIHuRef
CHM1_11436,002,929 - 36,005,941 (+)NCBICHM1_1
T2T-CHM13v2.01429,721,890 - 29,724,780 (+)NCBIT2T-CHM13v2.0
Insm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391255,646,212 - 55,648,818 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1255,646,212 - 55,648,871 (+)EnsemblGRCm39 Ensembl
GRCm381255,598,917 - 55,602,018 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1255,599,427 - 55,602,086 (+)EnsemblGRCm38mm10GRCm38
MGSCv371256,699,904 - 56,703,005 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361256,517,603 - 56,519,084 (+)NCBIMGSCv36mm8
Celera1256,748,546 - 56,751,647 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1224.05NCBI
Insm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540925,584,904 - 25,585,998 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540925,584,543 - 25,586,025 (-)NCBIChiLan1.0ChiLan1.0
INSM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11436,065,025 - 36,067,972 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01416,287,866 - 16,290,884 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11434,468,831 - 34,470,476 (+)NCBIpanpan1.1PanPan1.1panPan2
INSM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1814,217,694 - 14,220,661 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl814,217,785 - 14,219,458 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha814,013,937 - 14,016,656 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0814,324,080 - 14,326,798 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl814,324,080 - 14,325,753 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1814,025,158 - 14,027,875 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0814,090,754 - 14,093,472 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0814,380,468 - 14,383,186 (+)NCBIUU_Cfam_GSD_1.0
Insm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864046,139,681 - 46,142,555 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364949,645,673 - 9,647,361 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049364949,645,568 - 9,648,449 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INSM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl764,374,823 - 64,376,495 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1764,372,361 - 64,378,366 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2769,282,117 - 69,285,979 (-)NCBISscrofa10.2Sscrofa10.2susScr3
INSM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12412,340,659 - 12,343,663 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2412,340,864 - 12,342,570 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660531,305,073 - 1,308,143 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Insm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248381,271,100 - 1,272,764 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248381,269,909 - 1,272,849 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Insm2
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:73
Count of miRNA genes:63
Interacting mature miRNAs:66
Transcripts:ENSRNOT00000010188
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65672856290198260Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)67222764181132889Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 1 10 8 39 2 18 10
Below cutoff 3 10 23 17 11 17 7 9 29 9 7 1 7

Sequence


RefSeq Acc Id: ENSRNOT00000010188   ⟹   ENSRNOP00000010188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl676,383,446 - 76,384,933 (+)Ensembl
RefSeq Acc Id: NM_001398789   ⟹   NP_001385718
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2672,973,861 - 72,976,453 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001385718 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM03430 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: ENSRNOP00000010188   ⟸   ENSRNOT00000010188
RefSeq Acc Id: NP_001385718   ⟸   NM_001398789
- UniProtKB: A6HBM5 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZKF8-F1-model_v2 AlphaFold D3ZKF8 1-495 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306949 AgrOrtholog
BioCyc Gene G2FUF-37484 BioCyc
Ensembl Genes ENSRNOG00000007754 Ensembl
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro INSM1/2 UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene 314131 ENTREZGENE
PANTHER INSULINOMA-ASSOCIATED 1 UniProtKB/TrEMBL
  INSULINOMA-ASSOCIATED PROTEIN 2 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PhenoGen Insm2 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP beta-beta-alpha zinc fingers UniProtKB/TrEMBL
UniProt A6HBM5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-11 Insm2  INSM transcriptional repressor 2  Insm2  insulinoma-associated 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Insm2  insulinoma-associated 2   Insm2_predicted  insulinoma-associated 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Insm2_predicted  insulinoma-associated 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED