Tdrd9 (tudor domain containing 9) - Rat Genome Database

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Gene: Tdrd9 (tudor domain containing 9) Rattus norvegicus
Analyze
Symbol: Tdrd9
Name: tudor domain containing 9
RGD ID: 1306942
Description: Predicted to enable ATP hydrolysis activity; RNA binding activity; and helicase activity. Predicted to be involved in several processes, including male gamete generation; piRNA processing; and retrotransposon silencing by heterochromatin formation. Predicted to act upstream of or within retrotransposon silencing. Predicted to be located in nucleus and piP-body. Human ortholog(s) of this gene implicated in spermatogenic failure 30. Orthologous to human TDRD9 (tudor domain containing 9); INTERACTS WITH bisphenol A; N,N-diethyl-m-toluamide; permethrin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ATP-dependent RNA helicase TDRD9; LOC299343; putative ATP-dependent RNA helicase TDRD9; tudor domain-containing protein 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86136,850,797 - 136,966,225 (+)NCBIGRCr8
mRatBN7.26131,029,644 - 131,145,076 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6131,029,652 - 131,144,651 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.06136,536,636 - 136,650,481 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6136,536,736 - 136,649,859 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06145,545,128 - 145,660,285 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46136,758,888 - 136,876,987 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16136,797,304 - 136,883,174 (+)NCBI
Celera6128,583,056 - 128,697,859 (+)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
nucleus  (ISO,ISS)
piP-body  (ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:20011505   PMID:20059948   PMID:27473657   PMID:28536242   PMID:28633017  


Genomics

Comparative Map Data
Tdrd9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86136,850,797 - 136,966,225 (+)NCBIGRCr8
mRatBN7.26131,029,644 - 131,145,076 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6131,029,652 - 131,144,651 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.06136,536,636 - 136,650,481 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6136,536,736 - 136,649,859 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06145,545,128 - 145,660,285 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46136,758,888 - 136,876,987 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16136,797,304 - 136,883,174 (+)NCBI
Celera6128,583,056 - 128,697,859 (+)NCBICelera
Cytogenetic Map6q32NCBI
TDRD9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814103,928,456 - 104,052,667 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14103,928,456 - 104,052,667 (+)EnsemblGRCh38hg38GRCh38
GRCh3714104,394,793 - 104,519,004 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614103,506,687 - 103,588,755 (+)NCBINCBI36Build 36hg18NCBI36
Build 3414103,506,686 - 103,588,755NCBI
Celera1484,449,057 - 84,573,226 (+)NCBICelera
Cytogenetic Map14q32.33NCBI
HuRef1484,574,195 - 84,698,206 (+)NCBIHuRef
CHM1_114104,333,415 - 104,457,554 (+)NCBICHM1_1
T2T-CHM13v2.01498,165,768 - 98,289,910 (+)NCBIT2T-CHM13v2.0
Tdrd9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912111,937,922 - 112,035,288 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12111,937,993 - 112,035,288 (+)EnsemblGRCm39 Ensembl
GRCm3812111,971,488 - 112,068,854 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12111,971,559 - 112,068,854 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712113,209,770 - 113,307,065 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612112,441,483 - 112,516,088 (+)NCBIMGSCv36mm8
Celera12113,183,556 - 113,261,746 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1261.14NCBI
Tdrd9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555382,667,299 - 2,749,248 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555382,667,219 - 2,749,805 (+)NCBIChiLan1.0ChiLan1.0
TDRD9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215105,086,875 - 105,210,976 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114104,303,377 - 104,427,478 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01484,553,807 - 84,677,904 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114104,388,558 - 104,483,554 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14104,388,558 - 104,483,552 (+)Ensemblpanpan1.1panPan2
TDRD9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1871,610,653 - 71,717,772 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl871,610,711 - 71,717,199 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha871,120,610 - 71,228,073 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0871,886,616 - 71,993,319 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl871,888,154 - 71,992,748 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1871,575,326 - 71,683,074 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0871,615,778 - 71,722,590 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0872,014,293 - 72,121,198 (+)NCBIUU_Cfam_GSD_1.0
Tdrd9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086402,357,686 - 2,454,268 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366211,185,920 - 1,283,303 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366211,186,643 - 1,283,213 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TDRD9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.27131,038,909 - 131,119,104 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TDRD9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12481,864,846 - 81,992,674 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2481,866,235 - 81,992,093 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605369,188,530 - 69,319,098 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tdrd9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624734971,695 - 1,067,121 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624734971,174 - 1,067,178 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tdrd9
865 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:222
Count of miRNA genes:139
Interacting mature miRNAs:157
Transcripts:ENSRNOT00000017118, ENSRNOT00000064451
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)6122549046137801795Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6125628133137801795Rat

Markers in Region
AA998592  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26131,042,407 - 131,042,586 (+)MAPPERmRatBN7.2
Rnor_6.06136,548,546 - 136,548,724NCBIRnor6.0
Rnor_5.06145,557,384 - 145,557,562UniSTSRnor5.0
RGSC_v3.46136,771,757 - 136,771,935UniSTSRGSC3.4
Celera6128,595,423 - 128,595,601UniSTS
RH 3.4 Map6783.9UniSTS
Cytogenetic Map6q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 8 18
Low 2 3 1 15 20 14 1
Below cutoff 2 37 16 11 10 11 7 8 49 15 9 9 7

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001419577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001072421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC120242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC104675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000086594   ⟹   ENSRNOP00000073728
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6131,029,652 - 131,144,651 (+)Ensembl
Rnor_6.0 Ensembl6136,536,736 - 136,649,859 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110617   ⟹   ENSRNOP00000093190
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6131,029,652 - 131,144,651 (+)Ensembl
RefSeq Acc Id: NM_001419577   ⟹   NP_001406506
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,850,812 - 136,966,225 (+)NCBI
mRatBN7.26131,029,661 - 131,145,076 (+)NCBI
RefSeq Acc Id: XM_008764985   ⟹   XP_008763207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,850,797 - 136,965,468 (+)NCBI
mRatBN7.26131,029,645 - 131,144,320 (+)NCBI
Rnor_6.06136,536,637 - 136,649,751 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594514   ⟹   XP_017450003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,850,797 - 136,965,470 (+)NCBI
mRatBN7.26131,029,644 - 131,144,322 (+)NCBI
Rnor_6.06136,536,637 - 136,649,751 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594515   ⟹   XP_017450004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,850,797 - 136,966,225 (+)NCBI
mRatBN7.26131,029,645 - 131,145,076 (+)NCBI
Rnor_6.06136,536,637 - 136,650,481 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594516   ⟹   XP_017450005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,850,797 - 136,965,471 (+)NCBI
mRatBN7.26131,029,644 - 131,144,322 (+)NCBI
Rnor_6.06136,536,636 - 136,649,751 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039113387   ⟹   XP_038969315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,884,985 - 136,965,473 (+)NCBI
mRatBN7.26131,063,836 - 131,144,324 (+)NCBI
RefSeq Acc Id: XM_039113388   ⟹   XP_038969316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,902,735 - 136,965,476 (+)NCBI
mRatBN7.26131,081,592 - 131,144,327 (+)NCBI
RefSeq Acc Id: XM_039113391   ⟹   XP_038969319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,850,798 - 136,918,718 (+)NCBI
mRatBN7.26131,029,645 - 131,097,584 (+)NCBI
RefSeq Acc Id: XM_063261791   ⟹   XP_063117861
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,850,798 - 136,966,225 (+)NCBI
RefSeq Acc Id: XR_010052076
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,850,797 - 136,947,375 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008763207   ⟸   XM_008764985
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AIH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450005   ⟸   XM_017594516
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AIH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450004   ⟸   XM_017594515
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AIH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450003   ⟸   XM_017594514
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AIH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073728   ⟸   ENSRNOT00000086594
RefSeq Acc Id: XP_038969319   ⟸   XM_039113391
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038969315   ⟸   XM_039113387
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AIH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038969316   ⟸   XM_039113388
- Peptide Label: isoform X7
RefSeq Acc Id: ENSRNOP00000093190   ⟸   ENSRNOT00000110617
RefSeq Acc Id: NP_001406506   ⟸   NM_001419577
- UniProtKB: Q3MHU3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063117861   ⟸   XM_063261791
- Peptide Label: isoform X5
Protein Domains
Helicase ATP-binding   Helicase C-terminal   Tudor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3MHU3-F1-model_v2 AlphaFold Q3MHU3 1-1384 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306942 AgrOrtholog
BioCyc Gene G2FUF-35815 BioCyc
Ensembl Genes ENSRNOG00000053631 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055027249 UniProtKB/Swiss-Prot
  ENSRNOG00060025911 UniProtKB/Swiss-Prot
  ENSRNOG00065026445 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000086594 ENTREZGENE
  ENSRNOT00000086594.2 UniProtKB/Swiss-Prot
  ENSRNOT00000110617.1 UniProtKB/TrEMBL
  ENSRNOT00055047149 UniProtKB/Swiss-Prot
  ENSRNOT00060044902 UniProtKB/Swiss-Prot
  ENSRNOT00065045666 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.120.1080 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.30.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.40.50.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7135228 IMAGE-MGC_LOAD
InterPro DEAD/DEAH_box_helicase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase-assoc_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNase_OB-fold_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor_TDRD9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:299343 UniProtKB/Swiss-Prot
MGC_CLONE MGC:95321 IMAGE-MGC_LOAD
NCBI Gene 299343 ENTREZGENE
PANTHER ATP-DEPENDENT RNA HELICASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATP-DEPENDENT RNA HELICASE TDRD9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DEAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HA2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUDOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tdrd9 PhenoGen
PROSITE HELICASE_ATP_BIND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUDOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000053631 RatGTEx
  ENSRNOG00055027249 RatGTEx
  ENSRNOG00060025911 RatGTEx
  ENSRNOG00065026445 RatGTEx
SMART DEXDc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HA2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUDOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6AIH4 ENTREZGENE, UniProtKB/TrEMBL
  Q3MHU3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Tdrd9  tudor domain containing 9  Tdrd9_predicted  tudor domain containing 9 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Tdrd9_predicted  tudor domain containing 9 (predicted)      Symbol and Name status set to approved 70820 APPROVED