Acoxl (acyl-CoA oxidase-like) - Rat Genome Database

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Gene: Acoxl (acyl-CoA oxidase-like) Rattus norvegicus
Analyze
Symbol: Acoxl
Name: acyl-CoA oxidase-like
RGD ID: 1306814
Description: Predicted to have acyl-CoA oxidase activity; fatty acid binding activity; and flavin adenine dinucleotide binding activity. Predicted to be involved in fatty acid beta-oxidation using acyl-CoA oxidase and lipid homeostasis. Predicted to localize to peroxisome. Orthologous to human ACOXL (acyl-CoA oxidase like); INTERACTS WITH 6-propyl-2-thiouracil; bis(2-ethylhexyl) phthalate; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: acyl-Coenzyme A oxidase-like; LOC296138
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: AcoxlTn(sb-T2/Bart3)2.342Mcwi  
Genetic Models: F344-AcoxlTn(sb-T2/Bart3)2.342Mcwi
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23115,061,045 - 115,367,032 (+)NCBI
Rnor_6.0 Ensembl3120,414,291 - 120,726,336 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03120,414,311 - 120,724,809 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03126,606,586 - 126,919,666 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43115,365,279 - 115,687,566 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13115,270,851 - 115,592,468 (+)NCBI
Celera3113,895,591 - 114,198,178 (+)NCBICelera
Cytogenetic Map3q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
peroxisome  (IBA)

Molecular Function

References


Genomics

Comparative Map Data
Acoxl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23115,061,045 - 115,367,032 (+)NCBI
Rnor_6.0 Ensembl3120,414,291 - 120,726,336 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03120,414,311 - 120,724,809 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03126,606,586 - 126,919,666 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43115,365,279 - 115,687,566 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13115,270,851 - 115,592,468 (+)NCBI
Celera3113,895,591 - 114,198,178 (+)NCBICelera
Cytogenetic Map3q36NCBI
ACOXL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2110,732,539 - 111,120,610 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl2110,732,573 - 111,118,222 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl2110,732,573 - 111,118,548 (+)EnsemblGRCh38hg38GRCh38
GRCh382110,732,539 - 111,120,610 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372111,490,150 - 111,876,125 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362111,206,680 - 111,568,392 (+)NCBINCBI36hg18NCBI36
Build 342111,272,844 - 111,568,152NCBI
Celera2105,140,860 - 105,526,394 (+)NCBI
Cytogenetic Map2q13NCBI
HuRef2104,369,277 - 104,754,954 (+)NCBIHuRef
CHM1_12111,494,442 - 111,880,041 (+)NCBICHM1_1
Acoxl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392127,680,717 - 127,968,172 (+)NCBIGRCm39mm39
GRCm39 Ensembl2127,680,796 - 127,965,793 (+)Ensembl
GRCm382127,838,797 - 128,126,252 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2127,838,876 - 128,123,873 (+)EnsemblGRCm38mm10GRCm38
MGSCv372127,680,364 - 127,949,629 (+)NCBIGRCm37mm9NCBIm37
MGSCv362127,546,069 - 127,815,314 (+)NCBImm8
Celera2129,081,476 - 129,354,207 (+)NCBICelera
Cytogenetic Map2F1NCBI
Acoxl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554702,788,249 - 3,077,277 (-)NCBIChiLan1.0ChiLan1.0
ACOXL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A111,947,662 - 112,337,894 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A111,985,358 - 112,335,160 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A90,912,247 - 91,300,770 (-)NCBIMhudiblu_PPA_v0panPan3
ACOXL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11735,269,824 - 35,617,068 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1735,269,501 - 35,617,335 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1735,041,171 - 35,388,766 (+)NCBI
ROS_Cfam_1.01736,043,374 - 36,395,139 (+)NCBI
UMICH_Zoey_3.11735,169,680 - 35,512,611 (+)NCBI
UNSW_CanFamBas_1.01735,239,120 - 35,586,585 (+)NCBI
UU_Cfam_GSD_1.01735,449,542 - 35,797,620 (+)NCBI
ACOXL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl345,203,781 - 45,563,297 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1345,202,875 - 45,563,062 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2347,107,541 - 47,551,348 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACOXL
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11413,768,917 - 14,176,639 (+)NCBI
Acoxl
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247491,130,192 - 1,487,040 (-)NCBI

Position Markers
D3Got300  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23115,238,195 - 115,238,324 (+)MAPPER
Rnor_6.03120,598,424 - 120,598,552NCBIRnor6.0
Rnor_5.03126,732,904 - 126,733,032UniSTSRnor5.0
RGSC_v3.43115,544,052 - 115,544,180UniSTSRGSC3.4
Celera3114,072,271 - 114,072,399UniSTS
Cytogenetic Map3q36UniSTS
AU048179  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23115,123,916 - 115,124,092 (+)MAPPER
Rnor_6.03120,480,625 - 120,480,802NCBIRnor6.0
Rnor_5.03126,852,639 - 126,852,816UniSTSRnor5.0
RGSC_v3.43115,428,985 - 115,429,162UniSTSRGSC3.4
Celera3113,958,189 - 113,958,364UniSTS
Cytogenetic Map3q36UniSTS
BE100986  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23115,071,898 - 115,072,046 (+)MAPPER
mRatBN7.2649,859,431 - 49,859,582 (+)MAPPER
Rnor_6.0652,558,183 - 52,558,333NCBIRnor6.0
Rnor_6.03120,425,154 - 120,425,301NCBIRnor6.0
Rnor_5.0662,181,585 - 62,181,735UniSTSRnor5.0
Rnor_5.03126,908,213 - 126,908,360UniSTSRnor5.0
RGSC_v3.43115,376,557 - 115,376,704UniSTSRGSC3.4
RGSC_v3.4651,594,421 - 51,594,571UniSTSRGSC3.4
Celera649,049,695 - 49,049,845UniSTS
Celera3113,906,291 - 113,906,438UniSTS
RH 3.4 Map3986.4UniSTS
Cytogenetic Map3q36UniSTS
Cytogenetic Map6q16UniSTS
OMY6803INRA  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.03126,784,005 - 126,785,446UniSTSRnor5.0
Cytogenetic Map3q36UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)3103141814176418101Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)3103141814176418101Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3103141814176418101Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)330114912123700444Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)394788365139788365Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)397009185142009185Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)399465522168732722Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)361241033165369047Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)388910015133910015Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)362922868127023997Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)339248391140271184Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3117303473141971336Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)3102466149147466149Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)310639528127023997Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)310639528127023997Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)345406058177699992Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)345406058127023997Rat
1581546Pur13Proteinuria QTL 132.930.0335total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)381136227154416635Rat
1581568Rf53Renal function QTL 53total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)358204463170534769Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)378700444123700444Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3119471263164471263Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)330846101172879276Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)348561928155263151Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3102152812155263151Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3114376250159376250Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)351822008120917851Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)343295930163640485Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3103141944170934860Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)343295930163640485Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)372973445127023997Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)372672290127023997Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)3101058963146058963Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)351821836124513579Rat


Genetic Models
This gene Acoxl is modified in the following models/strains
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:236
Count of miRNA genes:156
Interacting mature miRNAs:175
Transcripts:ENSRNOT00000021740
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 10
Low 8 14 1 1 8 9 1 1
Below cutoff 3 17 25 17 5 17 7 9 11 35 21 7

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000021740   ⟹   ENSRNOP00000021740
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3120,414,395 - 120,724,809 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083627   ⟹   ENSRNOP00000072762
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3120,414,291 - 120,726,336 (+)Ensembl
RefSeq Acc Id: NM_001106508   ⟹   NP_001099978
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23115,061,137 - 115,364,686 (+)NCBI
Rnor_6.03120,414,395 - 120,724,809 (+)NCBI
Rnor_5.03126,606,586 - 126,919,666 (-)NCBI
RGSC_v3.43115,365,279 - 115,687,566 (+)RGD
Celera3113,895,591 - 114,198,178 (+)RGD
Sequence:
RefSeq Acc Id: XM_017591581   ⟹   XP_017447070
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23115,061,046 - 115,367,032 (+)NCBI
Rnor_6.03120,414,311 - 120,724,808 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591582   ⟹   XP_017447071
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03120,441,063 - 120,724,808 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591583   ⟹   XP_017447072
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23115,061,045 - 115,367,032 (+)NCBI
Rnor_6.03120,414,311 - 120,724,808 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104572   ⟹   XP_038960500
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23115,061,045 - 115,367,032 (+)NCBI
RefSeq Acc Id: XM_039104573   ⟹   XP_038960501
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23115,061,045 - 115,363,882 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001099978   ⟸   NM_001106508
- UniProtKB: D4A257 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447070   ⟸   XM_017591581
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017447072   ⟸   XM_017591583
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K3T0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447071   ⟸   XM_017591582
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000021740   ⟸   ENSRNOT00000021740
RefSeq Acc Id: ENSRNOP00000072762   ⟸   ENSRNOT00000083627
RefSeq Acc Id: XP_038960500   ⟸   XM_039104572
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038960501   ⟸   XM_039104573
- Peptide Label: isoform X4
Protein Domains
ACOX   Acyl-CoA_dh_1   Acyl-CoA_dh_M

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306814 AgrOrtholog
Ensembl Genes ENSRNOG00000016179 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000021740 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000072762 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021740 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000083627 UniProtKB/TrEMBL
InterPro Acyl-CoA_Oxase/DH_cen-dom UniProtKB/TrEMBL
  Acyl-CoA_oxidase UniProtKB/TrEMBL
  Acyl-CoA_oxidase_C UniProtKB/TrEMBL
  AcylCo_DH/oxidase_C UniProtKB/TrEMBL
  AcylCo_DH_C-like UniProtKB/TrEMBL
  AcylCoA_DH/oxidase UniProtKB/TrEMBL
KEGG Report rno:296138 UniProtKB/TrEMBL
NCBI Gene 296138 ENTREZGENE
Pfam ACOX UniProtKB/TrEMBL
  Acyl-CoA_dh_1 UniProtKB/TrEMBL
  Acyl-CoA_dh_M UniProtKB/TrEMBL
PhenoGen Acoxl PhenoGen
PIRSF Acyl-CoA_oxidase UniProtKB/TrEMBL
Superfamily-SCOP AcylCoA_dehyd_NM UniProtKB/TrEMBL
  AcylCoADH_C_like UniProtKB/TrEMBL
UniProt A0A0G2K3T0 ENTREZGENE, UniProtKB/TrEMBL
  D4A257 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-28 Acoxl  acyl-CoA oxidase-like  Acoxl  acyl-Coenzyme A oxidase-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Acoxl  acyl-Coenzyme A oxidase-like   Acoxl_predicted  acyl-Coenzyme A oxidase-like (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Acoxl_predicted  acyl-Coenzyme A oxidase-like (predicted)      Symbol and Name status set to approved 70820 APPROVED