Acoxl (acyl-CoA oxidase-like) - Rat Genome Database

Name: Acoxl
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Acoxl (acyl-CoA oxidase-like) Rattus norvegicus

Analyze

Symbol:

Acoxl

Name:

acyl-CoA oxidase-like

RGD ID:

1306814

Description:

Predicted to have acyl-CoA oxidase activity; fatty acid binding activity; and flavin adenine dinucleotide binding activity. Predicted to be involved in fatty acid beta-oxidation using acyl-CoA oxidase and lipid homeostasis. Predicted to localize to peroxisome. Orthologous to human ACOXL (acyl-CoA oxidase like); INTERACTS WITH 6-propyl-2-thiouracil; bis(2-ethylhexyl) phthalate; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

acyl-Coenzyme A oxidase-like; LOC296138

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ACOXL (acyl-CoA oxidase like)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Acoxl (acyl-Coenzyme A oxidase-like)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Acoxl (acyl-CoA oxidase like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ACOXL (acyl-CoA oxidase like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ACOXL (acyl-CoA oxidase like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ACOXL (acyl-CoA oxidase like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	ACOXL (acyl-CoA oxidase like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Acoxl (acyl-CoA oxidase like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ACOXL (acyl-CoA oxidase like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Acoxl (acyl-Coenzyme A oxidase-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)

Allele / Splice:

Acoxl^{Tn(sb-T2/Bart3)2.342Mcwi}

Genetic Models:

F344-Acoxl^{Tn(sb-T2/Bart3)2.342Mcwi}

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	115,061,045 - 115,367,032 (+)	NCBI
Rnor_6.0 Ensembl	3	120,414,291 - 120,726,336 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	120,414,311 - 120,724,809 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	126,606,586 - 126,919,666 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	115,365,279 - 115,687,566 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	115,270,851 - 115,592,468 (+)	NCBI
Celera	3	113,895,591 - 114,198,178 (+)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

B-Cell Chronic Lymphocytic Leukemia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

carbon nanotube (ISO)

chloroprene (ISO)

chrysene (ISO)

cyclosporin A (ISO)

dibenz[a,h]anthracene (ISO)

dibutyl phthalate (EXP)

dioxygen (ISO)

dorsomorphin (ISO)

entinostat (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

paracetamol (ISO)

pentachlorophenol (ISO)

SB 431542 (ISO)

tetraphene (ISO)

titanium dioxide (ISO)

tributylstannane (EXP)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

fatty acid beta-oxidation using acyl-CoA oxidase (IBA)

lipid homeostasis (IBA)

Cellular Component

peroxisome (IBA)

Molecular Function

acyl-CoA oxidase activity (IBA)

FAD binding (IEA)

fatty acid binding (IBA)

flavin adenine dinucleotide binding (IBA)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	MGD data from the GO Consortium
3.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Acoxl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	115,061,045 - 115,367,032 (+)	NCBI
Rnor_6.0 Ensembl	3	120,414,291 - 120,726,336 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	120,414,311 - 120,724,809 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	126,606,586 - 126,919,666 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	115,365,279 - 115,687,566 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	115,270,851 - 115,592,468 (+)	NCBI
Celera	3	113,895,591 - 114,198,178 (+)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

ACOXL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	110,732,539 - 111,120,610 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	2	110,732,573 - 111,118,222 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	2	110,732,573 - 111,118,548 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	110,732,539 - 111,120,610 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	111,490,150 - 111,876,125 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	111,206,680 - 111,568,392 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	2	111,272,844 - 111,568,152	NCBI
Celera	2	105,140,860 - 105,526,394 (+)	NCBI
Cytogenetic Map	2	q13	NCBI
HuRef	2	104,369,277 - 104,754,954 (+)	NCBI		HuRef
CHM1_1	2	111,494,442 - 111,880,041 (+)	NCBI		CHM1_1

Acoxl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	127,680,717 - 127,968,172 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	2	127,680,796 - 127,965,793 (+)	Ensembl
GRCm38	2	127,838,797 - 128,126,252 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	127,838,876 - 128,123,873 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	127,680,364 - 127,949,629 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	127,546,069 - 127,815,314 (+)	NCBI			mm8
Celera	2	129,081,476 - 129,354,207 (+)	NCBI		Celera
Cytogenetic Map	2	F1	NCBI

Acoxl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955470	2,788,249 - 3,077,277 (-)	NCBI	ChiLan1.0	ChiLan1.0

ACOXL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2A	111,947,662 - 112,337,894 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	111,985,358 - 112,335,160 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2A	90,912,247 - 91,300,770 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

ACOXL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	35,269,824 - 35,617,068 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	35,269,501 - 35,617,335 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	35,041,171 - 35,388,766 (+)	NCBI
ROS_Cfam_1.0	17	36,043,374 - 36,395,139 (+)	NCBI
UMICH_Zoey_3.1	17	35,169,680 - 35,512,611 (+)	NCBI
UNSW_CanFamBas_1.0	17	35,239,120 - 35,586,585 (+)	NCBI
UU_Cfam_GSD_1.0	17	35,449,542 - 35,797,620 (+)	NCBI

ACOXL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	45,203,781 - 45,563,297 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	45,202,875 - 45,563,062 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	47,107,541 - 47,551,348 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ACOXL
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	13,768,917 - 14,176,639 (+)	NCBI

Acoxl
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624749	1,130,192 - 1,487,040 (-)	NCBI

Position Markers

D3Got300

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	115,238,195 - 115,238,324 (+)	MAPPER
Rnor_6.0	3	120,598,424 - 120,598,552	NCBI	Rnor6.0
Rnor_5.0	3	126,732,904 - 126,733,032	UniSTS	Rnor5.0
RGSC_v3.4	3	115,544,052 - 115,544,180	UniSTS	RGSC3.4
Celera	3	114,072,271 - 114,072,399	UniSTS
Cytogenetic Map	3	q36	UniSTS

AU048179

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	115,123,916 - 115,124,092 (+)	MAPPER
Rnor_6.0	3	120,480,625 - 120,480,802	NCBI	Rnor6.0
Rnor_5.0	3	126,852,639 - 126,852,816	UniSTS	Rnor5.0
RGSC_v3.4	3	115,428,985 - 115,429,162	UniSTS	RGSC3.4
Celera	3	113,958,189 - 113,958,364	UniSTS
Cytogenetic Map	3	q36	UniSTS

BE100986

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	115,071,898 - 115,072,046 (+)	MAPPER
mRatBN7.2	6	49,859,431 - 49,859,582 (+)	MAPPER
Rnor_6.0	6	52,558,183 - 52,558,333	NCBI	Rnor6.0
Rnor_6.0	3	120,425,154 - 120,425,301	NCBI	Rnor6.0
Rnor_5.0	6	62,181,585 - 62,181,735	UniSTS	Rnor5.0
Rnor_5.0	3	126,908,213 - 126,908,360	UniSTS	Rnor5.0
RGSC_v3.4	3	115,376,557 - 115,376,704	UniSTS	RGSC3.4
RGSC_v3.4	6	51,594,421 - 51,594,571	UniSTS	RGSC3.4
Celera	6	49,049,695 - 49,049,845	UniSTS
Celera	3	113,906,291 - 113,906,438	UniSTS
RH 3.4 Map	3	986.4	UniSTS
Cytogenetic Map	3	q36	UniSTS
Cytogenetic Map	6	q16	UniSTS

OMY6803INRA

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	3	126,784,005 - 126,785,446	UniSTS	Rnor5.0
Cytogenetic Map	3	q36	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	103141814	176418101	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	103141814	176418101	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	103141814	176418101	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	30114912	123700444	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	94788365	139788365	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	97009185	142009185	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	99465522	168732722	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	61241033	165369047	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	88910015	133910015	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	62922868	127023997	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	39248391	140271184	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	117303473	141971336	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	102466149	147466149	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	45406058	177699992	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	45406058	127023997	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	total urine protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	81136227	154416635	Rat
1581568	Rf53	Renal function QTL 53			total urine protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	58204463	170534769	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	78700444	123700444	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	119471263	164471263	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	30846101	172879276	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	48561928	155263151	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	102152812	155263151	Rat
619618	Rf3	Renal disease susceptibility QTL 3	6.5	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate to body weight ratio (CMO:0001270)	3	114376250	159376250	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	51822008	120917851	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	43295930	163640485	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	103141944	170934860	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	43295930	163640485	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	72973445	127023997	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	72672290	127023997	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	101058963	146058963	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	51821836	124513579	Rat

Genetic Models

This gene Acoxl is modified in the following models/strains

F344-Acoxl^{Tn(sb-T2/Bart3)2.342Mcwi}

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	236
Count of miRNA genes:	156
Interacting mature miRNAs:	175
Transcripts:	ENSRNOT00000021740
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium												10
Low			8		14		1	1	8		9	1	1
Below cutoff	3	17	25	17	5	17	7	9	11	35	21		7

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000021740 ⟹ ENSRNOP00000021740

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	120,414,395 - 120,724,809 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000083627 ⟹ ENSRNOP00000072762

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	120,414,291 - 120,726,336 (+)	Ensembl

RefSeq Acc Id:

NM_001106508 ⟹ NP_001099978

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	115,061,137 - 115,364,686 (+)	NCBI
Rnor_6.0	3	120,414,395 - 120,724,809 (+)	NCBI
Rnor_5.0	3	126,606,586 - 126,919,666 (-)	NCBI
RGSC_v3.4	3	115,365,279 - 115,687,566 (+)	RGD
Celera	3	113,895,591 - 114,198,178 (+)	RGD

Sequence:

show sequence

ATGGAGCAGACTCCGGAGGGCCTGGGTCTTGGGGACTCATCGCTGCACCGCTACCTGGACGGGG
AATTCTGGAGCCTCAAGAATGAGCTTCGCAGAGCCCTGGAGAGCTCTCCTCTCTTCCAGCCCAG
GTATGATTTAAGTTTGGATGAAATGAGAGATTTGACAAATCAGCGAGTGAAGTTTGTCTTGAGT
CTCCCTCTGTTAAAGCGTGTACTCCAGGATCAGATCTTTCCTTTTTGGGCTTGGGCCTTCTGGC
TTCTGTTTGTCCTGGAACCTTGGCTTTTCCGAGCAGGCTGTGACAGGCTGCCCTGGATCTTGGT
CTGTGTGCTGCTTTTGGCAGGAGTCTTTGTCCCAGTCTACCCCCATGGACTTGGATGCTGGCCA
CCTGGCCAGTACTCTGGTTAGGCCAGCCCTGGCCCCATGGGATCCTGTGGAAGAGTTGAACAGA
GATGACAGGATGGAGTGGACTGTTTATAGAAGTCCCTCTGTATAGATTGGCATTCGAAGTGTGC
TGTCATCTGCAGGGACCACAGGGATTTCTTCAGAGAGCCTGCCAGGGAGTGAGTTGTCTGCCAA
GGGACTCCAGAGCAGCTGGAATCATGGAAGAAAAAAGGAATAACTTCATCAGCCAAAGCTTTGT
CCTGGGAGAAGTGCTCTGCATGGTAGATGTGTCCATGTCTATAAAGTGTGGAGTCATTTTTCTG
TTATTTGGCGGTGCAGTCAACAATCTTGGAAGTCCTGAACATGTTATCAAGTGGTTTCGCCCAC
TCAAGGAGCAGAAGTATACAGGGATGTTTGCGATGACCGAGAAGGGCCATGGGAGCAACATCAG
AGGGATCCAGACTGAGGCTACCTTTGACTGTGACAGTCAGGAGTTTGTGATTGACATGCCATGT
GAAAACGCCCAGAAGATGTACATTGGCAACGCCATGCATGGGAACTATGCTGCTGTCTTCGCCC
AGCTCATCATCGAGGGAAAGTCTCAAGGGCCCCATTGTTTCATTGTTCCTATCAGGGATGAAAA
TGGAAACTTGTACCCTGGAGTGACAGCTATTGACATGATGTACAAAGAAGGTCTGAATGGTGTG
GATAATGGAATTTTGATATTTGACAAGGTTCGGATTCCAAGAGAGAACATGCTGGATAAGTTAG
GTTCTGTGACTCCAGATGGACAATACCACTCACCTATTCAAAGCAAGAGTGCAAGATTCAATGC
AATGCTGGCCATACTGACCCCTTCAAGACTGGCAGTGACTTTCCAAGCGATGGGTGCCATGAAG
CTTGGACTGATGATAGCCATCCGCTATAGCCACAGCCGAAGGCAGTTTGGACCCAAGGGCAAAG
AAGAGGTGAAGATCATTGAGCACCAAATGCAGGCACTGAGGCTGATGTCTCACCTGGCCACAGC
CCTGGCCCTGACCTTCACCAGCAGGCATGCAGGCCACATCTTGGATGAAGACATCCTCCAGGGA
AGGGAGCTCATCAACAGACGCTCGCTACAGGCACTGATGGCTGGGCTGAAAGCCTACAGCACTT
GGGAGACTGTCCGCTGCCTACAGGACTGTCGTGAATGCACTGGAGGCATGGGTTACATGATGGA
AAACCGACTCTCAGGCCTGAAATGTGACACAGATGTGTTTGTAACCTTTGAAGGTGACAATGTG
GTCATGCTTCAGGTTGTGGCCCGGGAACTGCTGGCCCAGTACAGCAAGCAGCATAAGAAAAACC
CATTCTTGGGTATGATCCAGAACTGGACTGAAACTGCCATGGACAAGCTGAGAACCAGTTTCCT
GGTGTTTAACACTGACACAGTAGGACATCTTGCCTTTCTGCTGAAAGCAGTGAATTTTCGAGAA
AGAGTTCTTCAGCGAAGTTTGGTGTCCAGAATTTACTATAAGGTGGTGACCGAGAAGGGGGACT
TCTTCAGGGCCTGGAACTCCTGTATGCACCATGTCATCTCGTTGTCTCTGGCACACGTTCACAG
AGTTGCACTAGAACAGTTCACGCTGGCAGTGAGGCAGTGTCCCAACAGGGAGGACCAGGCTTTG
CTAATGAAGTTTTGTCTGTTGTATGGAACGAAGCTGCTGTTCCAGGAGCGGGGCTGGTACTTAG
AACATAAGTACCTGACTCCTGCGGCCAGCATGCGGATCAGGGCTCAGTTGCTGAATTTGTGCGA
GTCCGTGAAGGATGACTCCCTGAAGGTGATCTCTGCCTTCAATATTCCACACACCACCATCCAC
GCACCAACAGCGGGAACCCCCAACACCGGGGCTGCGGAGGCCTTCTCCCCGGCGCCCACGCAGC
CACTGGTGCAGAATGGGACGCGGTCTCGACTGGCCAAGCTGTGAGCCAGGCGAGAAATTTAGTG
TCCCATCTTCCGAATATTTGGCTAGAACCGGAGCAGAGGGCAAAGTGGCAGATGCAGGGCAACC
ACCTTGGGGAATTTCATCAGGCAGAGGAGGAGGTCCGGCTAAGGCTGGCAAGGAGCACGACAAG
TTGTCCGGGAGAGGGAGCCCTAGATGGACGCCCCAGTAGCATAGTGACTTATCCAGGTCTAGTA
ACCTCCCTGGCCCTTGCCTTGACTTCTCCCAGCCATGGCCATGGATCCCCAGACAATCGTCTCG
CCCACCGCACGGTGCCACCAAAGATCTCTACCGTCAGCGGTGACTCAGATTCACAGAGACTTCG
AAAGACATTGGGGCTGGGTGAAAAAAAAATCAAAACATAAAAATCAAACACCCTTAGGCAAAAG
GGGTGGAGGAAAGCTCCACCCTCTCCAAGCTCGGGCAAAAGTTCAACAAGGGATGATTAGTGAA
TCAGACTTGCTCCAACTCTGTGAGGAAATGCGCTGTCGAGAGCGGAGAGCTTAAGCCCGGAGTC
GCCCTAGTCTTACCAGGTAGGCGATCTCCGGACCGCAGGATCATGCGCAACAAGTTTCTCCTCG
CTAAACTGTTACCTAGCCTTCAGAAAAGCGTACGTGTGAAAAGTTTAATATATTAAACGGTAGA
AAGGTGCTCCGGCGACTTGGAAAGGTAGGGATGGCGGGTCTGGGGAATAGTTGGAATAAAGTGT
TTTTGGAATTTGGAGAGATTAC

hide sequence

RefSeq Acc Id:

XM_017591581 ⟹ XP_017447070

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	115,061,046 - 115,367,032 (+)	NCBI
Rnor_6.0	3	120,414,311 - 120,724,808 (+)	NCBI

Sequence:

show sequence

AGTGGAATGATAAGTAGGTGAACGGCCCAGAAGCCAGAAGATCTGAGGAGGTTTACTGAACAGT
TTGTAGCCTCAAGTACACAGATGGAGCAGACTCCGGAGGGCCTGGGTCTTGGGGACTCATCGCT
GCACCGCTACCTGGACGGGGAATTCTGGAGCCTCAAGAATGAGCTTCGCAGAGCCCTGGAGAGC
TCTCCTCTCTTCCAGCCCAGGTATGATTTAAGTTTGGATGAAATGAGAGATTTGACAAATCAGC
GAGTGAAGTTTGTCTTGAGTCTCCCTCTGTTAAAGCGTGTACTCCAGGATCAGGAAGAAAAAAG
GAATAACTTCATCAGCCAAAGCTTTGTCCTGGGAGAAGTGCTCTGCATGGTAGATGTGTCCATG
TCTATAAAGTGTGGAGTCATTTTTCTGTTATTTGGCGGTGCAGTCAACAATCTTGGAAGTCCTG
AACATGTTATCAAGTGGTTTCGCCCACTCAAGGAGCAGAAGTATACAGGGATGTTTGCGATGAC
CGAGAAGGGCCATGGGAGCAACATCAGAGGGATCCAGACTGAGGCTACCTTTGACTGTGACAGT
CAGGAGTTTGTGATTGACATGCCATGTGAAAACGCCCAGAAGATGTACATTGGCAACGCCATGC
ATGGGAACTATGCTGCTGTCTTCGCCCAGCTCATCATCGAGGGAAAGTCTCAAGGGCCCCATTG
TTTCATTGTTCCTATCAGGGATGAAAATGGAAACTTGTACCCTGGAGTGACAGCTATTGACATG
ATGTACAAAGAAGGTCTGAATGGTGTGGATAATGGAATTTTGATATTTGACAAGGTTCGGATTC
CAAGAGAGAACATGCTGGATAAGTTAGGTTCTGTGACTCCAGATGGACAATACCACTCACCTAT
TCAAAGCAAGAGTGCAAGATTCAATGCAATGCTGGCCATACTGACCCCTTCAAGACTGGCAGTG
ACTTTCCAAGCGATGGGTGCCATGAAGCTTGGACTGATGATAGCCATCCGCTATAGCCACAGCC
GAAGGCAGTTTGGACCCAAGGGCAAAGAAGAGGTGAAGATCATTGAGCACCAAATGCAGGCACT
GAGGCTGATGTCTCACCTGGCCACAGCCCTGGCCCTGACCTTCACCAGCAGGCATGCAGGCCAC
ATCTTGGATGAAGACATCCTCCAGGGAAGGGAGCTCATCAACAGACGCTCGCTACAGGCACTGA
TGGCTGGGCTGAAAGCCTACAGCACTTGGGAGACTGTCCGCTGCCTACAGGACTGTCGTGAATG
CACTGGAGGCATGGGTTACATGATGGAAAACCGACTCTCAGGCCTGAAATGTGACACAGATGTG
TTTGTAACCTTTGAAGGTGACAATGTGGTCATGCTTCAGGTTGTGGCCCGGGAACTGCTGGCCC
AGTACAGCAAGCAGCATAAGAAAAACCCATTCTTGGGTATGATCCAGAACTGGACTGAAACTGC
CATGGACAAGCTGAGAACCAGTTTCCTGGTGTTTAACACTGACACAGTAGGACATCTTGCCTTT
CTGCTGAAAGCAGTGAATTTTCGAGAAAGAGTTCTTCAGCGAAGTTTGGTGTCCAGAATTTACT
ATAAGGTGGTGACCGAGAAGGGGGACTTCTTCAGGGCCTGGAACTCCTGTATGCACCATGTCAT
CTCGTTGTCTCTGGCACACGTTCACAGAGTTGCACTAGAACAGTTCACGCTGGCAGTGAGGCAG
TGTCCCAACAGGGAGGACCAGGCTTTGCTAATGAAGTTTTGTCTGTTGTATGGAACGAAGCTGC
TGTTCCAGGAGCGGGGCTGGTACTTAGAACATAAGTACCTGACTCCTGCGGCCAGCATGCGGAT
CAGGGCTCAGTTGCTGAATTTGTGCGAGTCCGTGAAGGATGACTCCCTGAAGGTGATCTCTGCC
TTCAATATTCCACACACCACCATCCACGCACCAACAGCGGGAACCCCCAACACCGGGGCTGCGG
AGGCCTTCTCCCCGGCGCCCACGCAGCCACTGGTGCAGAATGGGACGCGGTCTCGACTGGCCAA
GCTGTGAGCCAGGCGAGAAATTTAGTGTCCCATCTTCCGAATATTTGGCTAGAACCGGAGCAGA
GGGCAAAGTGGCAGATGCAGGGCAACCACCTTGGGGAATTTCATCAGGCAGAGGAGGAGGTCCG
GCTAAGGCTGGCAAGGAGCACGACAAGTTGTCCGGGAGAGGGAGCCCTAGATGGACGCCCCAGT
AGCATAGTGACTTATCCAGGTCTAGTAACCTCCCTGGCCCTTGCCTTGACTTCTCCCAGCCATG
GCCATGGATCCCCAGACAATCGTCTCGCCCACCGCACGGTGCCACCAAAGATCTCTACCGTCAG
CGGTGACTCAGATTCACAGAGACTTCGAAAGACATTGGGGCTGGGTGAAAAAAAAATCAAAACA
TAAAAATCAAACACCCTTAGGCAAAAGGGGTGGAGGAAAGCTCCACCCTCTCCAAGCTCGGGCA
AAAGTTCAACAAGGGATGATTAGTGAATCAGACTTGCTCCAACTCTGTGAGGAAATGCGCTGTC
GAGAGCGGAGAGCTTAAGCCCGGAGTCGCCCTAGTCTTACCAGGTAGGCGATCTCCGGACCGCA
GGATCATGCGCAACAAGTTTCTCCTCGCTAAACTGTTACCTAGCCTTCAGAAAAGCGTACGTGT
GAAAAGTTTAATATATTAAACGGTAGAAAGGTGCTCCGGCGACTTGGAAAGGTAGGGATGGCGG
GTCTGGGGAATAGTTGGAATAAAGTGTTTTTGGAATTTGGAGAGATTA

hide sequence

RefSeq Acc Id:

XM_017591582 ⟹ XP_017447071

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	120,441,063 - 120,724,808 (+)	NCBI

Sequence:

show sequence

GCAGGAAGTCATGAATCTGTTGCAAAATTCTAGCCTAGCAGGGACTATGACAAGAAGCCAAGGA
AATGAGTCTGTCATTGGTCCTTCGTGACACTTTGTCCTGTTTAAGCCCCAAACACCAACCCAGT
CTAATGGTCCTAAGGATCATGACAGAGAAGCTTCCTCCCACCCATCCCTGTGCGTGCTCTGACT
TTCTCTCTCTCAGATCTTTCCTTTTTGGGCTTGGGCCTTCTGGCTTCTGTTTGTCCTGGAACCT
TGGCTTTTCCGAGCAGGCTGTGACAGGCTGCCCTGGATCTTGGTCTGTGTGCTGCTTTTGGCAG
GAGTCTTTGTCCCAGTCTACCCCCATGGACTTGGATGCTGGCCACCTGGCCAGTACTCTGGTTA
GGCCAGCCCTGGCCCCATGGGATCCTGTGGAAGAGTTGAACAGAGATGACAGGATGGAGTGGAC
TGTTTATAGAAGTCCCTCTGTATAGATTGGCATTCGAAGTGTGCTGTCATCTGCAGGGACCACA
GGGATTTCTTCAGAGAGCCTGCCAGGGAGTGAGTTGTCTGCCAAGGGACTCCAGAGCAGCTGGA
ATCATGGAAGAAAAAAGGAATAACTTCATCAGCCAAAGCTTTGTCCTGGGAGAAGTGCTCTGCA
TGGTAGATGTGTCCATGTCTATAAAGTGTGGAGTCATTTTTCTGTTATTTGGCGGTGCAGTCAA
CAATCTTGGAAGTCCTGAACATGTTATCAAGTGGTTTCGCCCACTCAAGGAGCAGAAGTATACA
GGGATGTTTGCGATGACCGAGAAGGGCCATGGGAGCAACATCAGAGGGATCCAGACTGAGGCTA
CCTTTGACTGTGACAGTCAGGAGTTTGTGATTGACATGCCATGTGAAAACGCCCAGAAGATGTA
CATTGGCAACGCCATGCATGGGAACTATGCTGCTGTCTTCGCCCAGCTCATCATCGAGGGAAAG
TCTCAAGGGCCCCATTGTTTCATTGTTCCTATCAGGGATGAAAATGGAAACTTGTACCCTGGAG
TGACAGCTATTGACATGATGTACAAAGAAGGTCTGAATGGTGTGGATAATGGAATTTTGATATT
TGACAAGGTTCGGATTCCAAGAGAGAACATGCTGGATAAGTTAGGTTCTGTGACTCCAGATGGA
CAATACCACTCACCTATTCAAAGCAAGAGTGCAAGATTCAATGCAATGCTGGCCATACTGACCC
CTTCAAGACTGGCAGTGACTTTCCAAGCGATGGGTGCCATGAAGCTTGGACTGATGATAGCCAT
CCGCTATAGCCACAGCCGAAGGCAGTTTGGACCCAAGGGCAAAGAAGAGGTGAAGATCATTGAG
CACCAAATGCAGGCACTGAGGCTGATGTCTCACCTGGCCACAGCCCTGGCCCTGACCTTCACCA
GCAGGCATGCAGGCCACATCTTGGATGAAGACATCCTCCAGGGAAGGGAGCTCATCAACAGACG
CTCGCTACAGGCACTGATGGCTGGGCTGAAAGCCTACAGCACTTGGGAGACTGTCCGCTGCCTA
CAGGACTGTCGTGAATGCACTGGAGGCATGGGTTACATGATGGAAAACCGACTCTCAGGCCTGA
AATGTGACACAGATGTGTTTGTAACCTTTGAAGGTGACAATGTGGTCATGCTTCAGGTTGTGGC
CCGGGAACTGCTGGCCCAGTACAGCAAGCAGCATAAGAAAAACCCATTCTTGGGTATGATCCAG
AACTGGACTGAAACTGCCATGGACAAGCTGAGAACCAGTTTCCTGGTGTTTAACACTGACACAG
TAGGACATCTTGCCTTTCTGCTGAAAGCAGTGAATTTTCGAGAAAGAGTTCTTCAGCGAAGTTT
GGTGTCCAGAATTTACTATAAGGTGGTGACCGAGAAGGGGGACTTCTTCAGGGCCTGGAACTCC
TGTATGCACCATGTCATCTCGTTGTCTCTGGCACACGTTCACAGAGTTGCACTAGAACAGTTCA
CGCTGGCAGTGAGGCAGTGTCCCAACAGGGAGGACCAGGCTTTGCTAATGAAGTTTTGTCTGTT
GTATGGAACGAAGCTGCTGTTCCAGGAGCGGGGCTGGTACTTAGAACATAAGTACCTGACTCCT
GCGGCCAGCATGCGGATCAGGGCTCAGTTGCTGAATTTGTGCGAGTCCGTGAAGGATGACTCCC
TGAAGGTGATCTCTGCCTTCAATATTCCACACACCACCATCCACGCACCAACAGCGGGAACCCC
CAACACCGGGGCTGCGGAGGCCTTCTCCCCGGCGCCCACGCAGCCACTGGTGCAGAATGGGACG
CGGTCTCGACTGGCCAAGCTGTGAGCCAGGCGAGAAATTTAGTGTCCCATCTTCCGAATATTTG
GCTAGAACCGGAGCAGAGGGCAAAGTGGCAGATGCAGGGCAACCACCTTGGGGAATTTCATCAG
GCAGAGGAGGAGGTCCGGCTAAGGCTGGCAAGGAGCACGACAAGTTGTCCGGGAGAGGGAGCCC
TAGATGGACGCCCCAGTAGCATAGTGACTTATCCAGGTCTAGTAACCTCCCTGGCCCTTGCCTT
GACTTCTCCCAGCCATGGCCATGGATCCCCAGACAATCGTCTCGCCCACCGCACGGTGCCACCA
AAGATCTCTACCGTCAGCGGTGACTCAGATTCACAGAGACTTCGAAAGACATTGGGGCTGGGTG
AAAAAAAAATCAAAACATAAAAATCAAACACCCTTAGGCAAAAGGGGTGGAGGAAAGCTCCACC
CTCTCCAAGCTCGGGCAAAAGTTCAACAAGGGATGATTAGTGAATCAGACTTGCTCCAACTCTG
TGAGGAAATGCGCTGTCGAGAGCGGAGAGCTTAAGCCCGGAGTCGCCCTAGTCTTACCAGGTAG
GCGATCTCCGGACCGCAGGATCATGCGCAACAAGTTTCTCCTCGCTAAACTGTTACCTAGCCTT
CAGAAAAGCGTACGTGTGAAAAGTTTAATATATTAAACGGTAGAAAGGTGCTCCGGCGACTTGG
AAAGGTAGGGATGGCGGGTCTGGGGAATAGTTGGAATAAAGTGTTTTTGGAATTTGGAGAGATT
A

hide sequence

RefSeq Acc Id:

XM_017591583 ⟹ XP_017447072

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	115,061,045 - 115,367,032 (+)	NCBI
Rnor_6.0	3	120,414,311 - 120,724,808 (+)	NCBI

Sequence:

show sequence

AGTGGAATGATAAGTAGGTGAACGGCCCAGAAGCCAGAAGATCTGAGGAGGTTTACTGAACAGT
TTGTAGCCTCAAGTACACAGATGGAGCAGACTCCGGAGGGCCTGGGTCTTGGGGACTCATCGCT
GCACCGCTACCTGGACGGGGAATTCTGGAGCCTCAAGAATGAGCTTCGCAGAGCCCTGGAGAGC
TCTCCTCTCTTCCAGCCCAGGTATGATTTAAGTTTGGATGAAATGAGAGATTTGACAAATCAGC
GAGTGAAGTTTGTCTTGAGTCTCCCTCTGTTAAAGCGTGTACTCCAGGATCAGGAAGAAAAAAG
GAATAACTTCATCAGCCAAAGCTTTGTCCTGGGAGAAGTGCTCTGCATGGTAGATGTGTCCATG
TCTATAAAGTGTGGAGTCATTTTTCTGTTATTTGGCGGTGCAGTCAACAATCTTGGAAGTCCTG
AACATGTTATCAAGTGGTTTCGCCCACTCAAGGAGCAGAAGTATACAGGGATGTTTGCGATGAC
CGAGAAGGGCCATGGGAGCAACATCAGAGGGATCCAGACTGAGGCTACCTTTGACTGTGACAGT
CAGGAGTTTGTGATTGACATGCCATGTGAAAACGCCCAGAAGATGTACATTGGCAACGCCATGC
ATGGGAACTATGCTGCTGTCTTCGCCCAGCTCATCATCGAGGGAAAGTCTCAAGGGCCCCATTG
TTTCATTGTTCCTATCAGGGATGAAAATGGAAACTTGTACCCTGGAGTGACAGCTATTGACATG
ATGTACAAAGAAGGTCTGAATGGTGTGGATAATGGAATTTTGATATTTGACAAGGTTCGGATTC
CAAGAGAGAACATGCTGGATAAGTTAGGTTCTGTGACTCCAGATGGACAATACCACTCACCTAT
TCAAAGCAAGAGTGCAAGATTCAATGCAATGCTGGCCATACTGACCCCTTCAAGACTGGCAGTG
ACTTTCCAAGCGATGGGTGCCATGAAGCTTGGACTGATGATAGCCATCCGCTATAGCCACAGCC
GAAGGCAGTTTGGACCCAAGGGCAAAGAAGAGGTGAAGATCATTGAGCACCAAATGCAGGCACT
GAGGCTGATGTCTCACCTGGCCACAGCCCTGGCCCTGACCTTCACCAGCAGGCATGCAGGCCAC
ATCTTGGATGAAGACATCCTCCAGGGAAGGGAGCTCATCAACAGACGCTCGCTACAGGCACTGA
TGGCTGGGCTGAAAGCCTACAGCACTTGGGAGACTGTCCGCTGCCTACAGGACTGTCGTGAATG
CACTGGAGGCATGGGTTACATGATGGAAAACCGACTCTCAGGCCTGAAATGTGACACAGATGTG
TTTGTAACCTTTGAAGGTGACAATGTGGTCATGCTTCAGGTTGTGGCCCGGGAACTGCTGGCCC
AGTACAGCAAGCAGCATAAGAAAAACCCATTCTTGGGTATGATCCAGAACTGGACTGAAACTGC
CATGGACAAGCTGAGAACCAGTTTCCTGGTGTTTAACACTGACACAGTAGGACATCTTGCCTTT
CTGCTGAAAGCAGTGAATTTTCGAGAAAGAGTTCTTCAGCGAAGTTTGGTGTCCAGAATTTACT
ATAAGGTGGTGACCGAGAAGGGGGACTTCTTCAGGGCCTGGAACTCCTGTATGCACCATGTCAT
CTCGTTGTCTCTGGCACACGTTCACAGAGTTGCACTAGAACAGTTCACGCTGGCAGTGAGGCAG
TGTCCCAACAGGGAGGACCAGGCTTTGCTAATGAAGTTGCTGAATTTGTGCGAGTCCGTGAAGG
ATGACTCCCTGAAGGTGATCTCTGCCTTCAATATTCCACACACCACCATCCACGCACCAACAGC
GGGAACCCCCAACACCGGGGCTGCGGAGGCCTTCTCCCCGGCGCCCACGCAGCCACTGGTGCAG
AATGGGACGCGGTCTCGACTGGCCAAGCTGTGAGCCAGGCGAGAAATTTAGTGTCCCATCTTCC
GAATATTTGGCTAGAACCGGAGCAGAGGGCAAAGTGGCAGATGCAGGGCAACCACCTTGGGGAA
TTTCATCAGGCAGAGGAGGAGGTCCGGCTAAGGCTGGCAAGGAGCACGACAAGTTGTCCGGGAG
AGGGAGCCCTAGATGGACGCCCCAGTAGCATAGTGACTTATCCAGGTCTAGTAACCTCCCTGGC
CCTTGCCTTGACTTCTCCCAGCCATGGCCATGGATCCCCAGACAATCGTCTCGCCCACCGCACG
GTGCCACCAAAGATCTCTACCGTCAGCGGTGACTCAGATTCACAGAGACTTCGAAAGACATTGG
GGCTGGGTGAAAAAAAAATCAAAACATAAAAATCAAACACCCTTAGGCAAAAGGGGTGGAGGAA
AGCTCCACCCTCTCCAAGCTCGGGCAAAAGTTCAACAAGGGATGATTAGTGAATCAGACTTGCT
CCAACTCTGTGAGGAAATGCGCTGTCGAGAGCGGAGAGCTTAAGCCCGGAGTCGCCCTAGTCTT
ACCAGGTAGGCGATCTCCGGACCGCAGGATCATGCGCAACAAGTTTCTCCTCGCTAAACTGTTA
CCTAGCCTTCAGAAAAGCGTACGTGTGAAAAGTTTAATATATTAAACGGTAGAAAGGTGCTCCG
GCGACTTGGAAAGGTAGGGATGGCGGGTCTGGGGAATAGTTGGAATAAAGTGTTTTTGGAATTT
GGAGAGATTA

hide sequence

RefSeq Acc Id:

XM_039104572 ⟹ XP_038960500

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	115,061,045 - 115,367,032 (+)	NCBI

RefSeq Acc Id:

XM_039104573 ⟹ XP_038960501

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	115,061,045 - 115,363,882 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099978	(Get FASTA)	NCBI Sequence Viewer
	XP_017447070	(Get FASTA)	NCBI Sequence Viewer
	XP_017447072	(Get FASTA)	NCBI Sequence Viewer
	XP_038960500	(Get FASTA)	NCBI Sequence Viewer
	XP_038960501	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL80130	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001099978 ⟸ NM_001106508

- UniProtKB:

D4A257 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTGWSGLFIEVPLYRLAFEVCCHLQGPQGFLQRACQGVSCLPRDSRAAGIMEEKRNNFISQSFV
LGEVLCMVDVSMSIKCGVIFLLFGGAVNNLGSPEHVIKWFRPLKEQKYTGMFAMTEKGHGSNIR
GIQTEATFDCDSQEFVIDMPCENAQKMYIGNAMHGNYAAVFAQLIIEGKSQGPHCFIVPIRDEN
GNLYPGVTAIDMMYKEGLNGVDNGILIFDKVRIPRENMLDKLGSVTPDGQYHSPIQSKSARFNA
MLAILTPSRLAVTFQAMGAMKLGLMIAIRYSHSRRQFGPKGKEEVKIIEHQMQALRLMSHLATA
LALTFTSRHAGHILDEDILQGRELINRRSLQALMAGLKAYSTWETVRCLQDCRECTGGMGYMME
NRLSGLKCDTDVFVTFEGDNVVMLQVVARELLAQYSKQHKKNPFLGMIQNWTETAMDKLRTSFL
VFNTDTVGHLAFLLKAVNFRERVLQRSLVSRIYYKVVTEKGDFFRAWNSCMHHVISLSLAHVHR
VALEQFTLAVRQCPNREDQALLMKFCLLYGTKLLFQERGWYLEHKYLTPAASMRIRAQLLNLCE
SVKDDSLKVISAFNIPHTTIHAPTAGTPNTGAAEAFSPAPTQPLVQNGTRSRLAKL

hide sequence

RefSeq Acc Id:

XP_017447070 ⟸ XM_017591581

- Peptide Label:

isoform X1

- Sequence:

show sequence

MEQTPEGLGLGDSSLHRYLDGEFWSLKNELRRALESSPLFQPRYDLSLDEMRDLTNQRVKFVLS
LPLLKRVLQDQEEKRNNFISQSFVLGEVLCMVDVSMSIKCGVIFLLFGGAVNNLGSPEHVIKWF
RPLKEQKYTGMFAMTEKGHGSNIRGIQTEATFDCDSQEFVIDMPCENAQKMYIGNAMHGNYAAV
FAQLIIEGKSQGPHCFIVPIRDENGNLYPGVTAIDMMYKEGLNGVDNGILIFDKVRIPRENMLD
KLGSVTPDGQYHSPIQSKSARFNAMLAILTPSRLAVTFQAMGAMKLGLMIAIRYSHSRRQFGPK
GKEEVKIIEHQMQALRLMSHLATALALTFTSRHAGHILDEDILQGRELINRRSLQALMAGLKAY
STWETVRCLQDCRECTGGMGYMMENRLSGLKCDTDVFVTFEGDNVVMLQVVARELLAQYSKQHK
KNPFLGMIQNWTETAMDKLRTSFLVFNTDTVGHLAFLLKAVNFRERVLQRSLVSRIYYKVVTEK
GDFFRAWNSCMHHVISLSLAHVHRVALEQFTLAVRQCPNREDQALLMKFCLLYGTKLLFQERGW
YLEHKYLTPAASMRIRAQLLNLCESVKDDSLKVISAFNIPHTTIHAPTAGTPNTGAAEAFSPAP
TQPLVQNGTRSRLAKL

hide sequence

RefSeq Acc Id:	XP_017447072 ⟸ XM_017591583
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K3T0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQTPEGLGLGDSSLHRYLDGEFWSLKNELRRALESSPLFQPRYDLSLDEMRDLTNQRVKFVLS LPLLKRVLQDQEEKRNNFISQSFVLGEVLCMVDVSMSIKCGVIFLLFGGAVNNLGSPEHVIKWF RPLKEQKYTGMFAMTEKGHGSNIRGIQTEATFDCDSQEFVIDMPCENAQKMYIGNAMHGNYAAV FAQLIIEGKSQGPHCFIVPIRDENGNLYPGVTAIDMMYKEGLNGVDNGILIFDKVRIPRENMLD KLGSVTPDGQYHSPIQSKSARFNAMLAILTPSRLAVTFQAMGAMKLGLMIAIRYSHSRRQFGPK GKEEVKIIEHQMQALRLMSHLATALALTFTSRHAGHILDEDILQGRELINRRSLQALMAGLKAY STWETVRCLQDCRECTGGMGYMMENRLSGLKCDTDVFVTFEGDNVVMLQVVARELLAQYSKQHK KNPFLGMIQNWTETAMDKLRTSFLVFNTDTVGHLAFLLKAVNFRERVLQRSLVSRIYYKVVTEK GDFFRAWNSCMHHVISLSLAHVHRVALEQFTLAVRQCPNREDQALLMKLLNLCESVKDDSLKVI SAFNIPHTTIHAPTAGTPNTGAAEAFSPAPTQPLVQNGTRSRLAKL hide sequence

RefSeq Acc Id:

XP_017447071 ⟸ XM_017591582

- Peptide Label:

isoform X2

- Sequence:

show sequence

MTGWSGLFIEVPLYRLAFEVCCHLQGPQGFLQRACQGVSCLPRDSRAAGIMEEKRNNFISQSFV
LGEVLCMVDVSMSIKCGVIFLLFGGAVNNLGSPEHVIKWFRPLKEQKYTGMFAMTEKGHGSNIR
GIQTEATFDCDSQEFVIDMPCENAQKMYIGNAMHGNYAAVFAQLIIEGKSQGPHCFIVPIRDEN
GNLYPGVTAIDMMYKEGLNGVDNGILIFDKVRIPRENMLDKLGSVTPDGQYHSPIQSKSARFNA
MLAILTPSRLAVTFQAMGAMKLGLMIAIRYSHSRRQFGPKGKEEVKIIEHQMQALRLMSHLATA
LALTFTSRHAGHILDEDILQGRELINRRSLQALMAGLKAYSTWETVRCLQDCRECTGGMGYMME
NRLSGLKCDTDVFVTFEGDNVVMLQVVARELLAQYSKQHKKNPFLGMIQNWTETAMDKLRTSFL
VFNTDTVGHLAFLLKAVNFRERVLQRSLVSRIYYKVVTEKGDFFRAWNSCMHHVISLSLAHVHR
VALEQFTLAVRQCPNREDQALLMKFCLLYGTKLLFQERGWYLEHKYLTPAASMRIRAQLLNLCE
SVKDDSLKVISAFNIPHTTIHAPTAGTPNTGAAEAFSPAPTQPLVQNGTRSRLAKL

hide sequence

RefSeq Acc Id:

ENSRNOP00000021740 ⟸ ENSRNOT00000021740

RefSeq Acc Id:

ENSRNOP00000072762 ⟸ ENSRNOT00000083627

RefSeq Acc Id:	XP_038960500 ⟸ XM_039104572
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038960501 ⟸ XM_039104573
- Peptide Label:	isoform X4

Protein Domains

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306814	AgrOrtholog
Ensembl Genes	ENSRNOG00000016179	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000021740	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000072762	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021740	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000083627	UniProtKB/TrEMBL
InterPro	Acyl-CoA_Oxase/DH_cen-dom	UniProtKB/TrEMBL
	Acyl-CoA_oxidase	UniProtKB/TrEMBL
	Acyl-CoA_oxidase_C	UniProtKB/TrEMBL
	AcylCo_DH/oxidase_C	UniProtKB/TrEMBL
	AcylCo_DH_C-like	UniProtKB/TrEMBL
	AcylCoA_DH/oxidase	UniProtKB/TrEMBL
KEGG Report	rno:296138	UniProtKB/TrEMBL
NCBI Gene	296138	ENTREZGENE
Pfam	ACOX	UniProtKB/TrEMBL
	Acyl-CoA_dh_1	UniProtKB/TrEMBL
	Acyl-CoA_dh_M	UniProtKB/TrEMBL
PhenoGen	Acoxl	PhenoGen
PIRSF	Acyl-CoA_oxidase	UniProtKB/TrEMBL
Superfamily-SCOP	AcylCoA_dehyd_NM	UniProtKB/TrEMBL
	AcylCoADH_C_like	UniProtKB/TrEMBL
UniProt	A0A0G2K3T0	ENTREZGENE, UniProtKB/TrEMBL
	D4A257	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-28	Acoxl	acyl-CoA oxidase-like	Acoxl	acyl-Coenzyme A oxidase-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Acoxl	acyl-Coenzyme A oxidase-like	Acoxl_predicted	acyl-Coenzyme A oxidase-like (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Acoxl_predicted	acyl-Coenzyme A oxidase-like (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD