Hmbox1 (homeobox containing 1) - Rat Genome Database

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Gene: Hmbox1 (homeobox containing 1) Rattus norvegicus
Analyze
Symbol: Hmbox1
Name: homeobox containing 1
RGD ID: 1306787
Description: Predicted to enable double-stranded telomeric DNA binding activity; identical protein binding activity; and sequence-specific double-stranded DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; telomere maintenance via telomerase; and telomere-telomerase complex assembly. Predicted to be located in chromosome, telomeric region and cytoplasm. Predicted to be active in nucleus. Orthologous to human HMBOX1 (homeobox containing 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: homeobox-containing protein 1; LOC305968; RGD1306787; similar to hypothetical protein FLJ21616
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81543,243,503 - 43,376,011 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1543,222,470 - 43,376,011 (-)EnsemblGRCr8
mRatBN7.21539,067,805 - 39,200,633 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1539,067,804 - 39,200,323 (-)EnsemblmRatBN7.2
Rnor_6.01548,194,709 - 48,326,310 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1548,199,995 - 48,284,548 (-)Ensemblrn6Rnor6.0
Rnor_5.01551,919,925 - 52,073,979 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41544,182,450 - 44,305,484 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1538,744,265 - 38,876,101 (-)NCBICelera
RGSC_v3.11544,197,983 - 44,320,631 (-)NCBI
Cytogenetic Map15p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
Cajal body  (IEA)
centrosome  (IEA,ISO)
chromosome, telomeric region  (IEA,ISO)
cytoplasm  (IEA,ISO)
cytosol  (IEA,ISO)
nuclear body  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)
PML body  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19135898   PMID:19757162   PMID:20822188   PMID:21839858   PMID:23332764   PMID:23685356   PMID:25416956   PMID:28473536  


Genomics

Comparative Map Data
Hmbox1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81543,243,503 - 43,376,011 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1543,222,470 - 43,376,011 (-)EnsemblGRCr8
mRatBN7.21539,067,805 - 39,200,633 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1539,067,804 - 39,200,323 (-)EnsemblmRatBN7.2
Rnor_6.01548,194,709 - 48,326,310 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1548,199,995 - 48,284,548 (-)Ensemblrn6Rnor6.0
Rnor_5.01551,919,925 - 52,073,979 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41544,182,450 - 44,305,484 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1538,744,265 - 38,876,101 (-)NCBICelera
RGSC_v3.11544,197,983 - 44,320,631 (-)NCBI
Cytogenetic Map15p12NCBI
HMBOX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38828,890,116 - 29,053,270 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl828,890,292 - 29,064,764 (+)Ensemblhg38GRCh38
GRCh37828,747,912 - 28,910,787 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36828,804,144 - 28,965,351 (+)NCBIBuild 36Build 36hg18NCBI36
Celera827,707,732 - 27,869,989 (+)NCBICelera
Cytogenetic Map8p21.1-p12NCBI
HuRef827,293,007 - 27,455,132 (+)NCBIHuRef
CHM1_1828,949,910 - 29,112,203 (+)NCBICHM1_1
T2T-CHM13v2.0829,168,300 - 29,331,436 (+)NCBIT2T-CHM13v2.0
Hmbox1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391465,049,049 - 65,187,354 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1465,049,049 - 65,187,320 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381464,811,600 - 64,949,899 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1464,811,600 - 64,949,871 (-)Ensemblmm10GRCm38
MGSCv371465,441,055 - 65,568,684 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361463,776,328 - 63,903,957 (-)NCBIMGSCv36mm8
Celera1462,584,174 - 62,711,763 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.79NCBI
Hmbox1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540351,257,472 - 51,365,835 (+)Ensembl
ChiLan1.0NW_00495540351,199,547 - 51,377,249 (+)NCBIChiLan1.0ChiLan1.0
HMBOX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2747,434,897 - 47,612,451 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1823,147,878 - 23,325,337 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0828,173,256 - 28,350,591 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1825,370,077 - 25,547,208 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl825,446,264 - 25,547,208 (+)EnsemblpanPan2panpan1.1
HMBOX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12528,489,472 - 28,679,322 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2528,489,506 - 28,679,748 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2529,137,090 - 29,327,184 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02528,643,730 - 28,835,028 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2528,643,730 - 28,835,023 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12528,603,599 - 28,794,841 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02528,491,031 - 28,680,245 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02528,653,266 - 28,842,626 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Hmbox1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049436,844,865 - 7,007,445 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366751,647,143 - 1,735,390 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366751,578,705 - 1,741,283 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HMBOX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1412,692,588 - 12,882,558 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11412,692,607 - 12,895,078 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21413,933,447 - 14,137,116 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HMBOX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1826,999,474 - 27,177,244 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl826,999,468 - 27,163,526 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605214,947,485 - 15,131,238 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hmbox1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475823,548,514 - 23,638,713 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475823,472,719 - 23,649,924 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Hmbox1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11259,460,924 - 59,593,150 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Hmbox1
606 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:142
Count of miRNA genes:108
Interacting mature miRNAs:119
Transcripts:ENSRNOT00000017962, ENSRNOT00000038288, ENSRNOT00000038336, ENSRNOT00000059102
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)154046315285463152Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat

Markers in Region
RH144424  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21539,078,728 - 39,078,893 (+)MAPPERmRatBN7.2
Rnor_6.01548,205,630 - 48,205,794NCBIRnor6.0
Rnor_5.01551,952,852 - 51,953,016UniSTSRnor5.0
RGSC_v3.41544,183,099 - 44,183,263UniSTSRGSC3.4
Celera1538,755,183 - 38,755,347UniSTS
RH 3.4 Map15289.9UniSTS
Cytogenetic Map15p12UniSTS
BF398724  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21539,085,069 - 39,085,294 (+)MAPPERmRatBN7.2
Rnor_6.01548,211,971 - 48,212,195NCBIRnor6.0
Rnor_5.01551,959,193 - 51,959,417UniSTSRnor5.0
RGSC_v3.41544,189,440 - 44,189,664UniSTSRGSC3.4
Celera1538,761,524 - 38,761,748UniSTS
RH 3.4 Map15290.5UniSTS
Cytogenetic Map15p12UniSTS
BF391108  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21539,143,525 - 39,143,669 (+)MAPPERmRatBN7.2
Rnor_6.01548,269,517 - 48,269,660NCBIRnor6.0
Rnor_5.01552,016,426 - 52,016,569UniSTSRnor5.0
RGSC_v3.41544,248,718 - 44,248,861UniSTSRGSC3.4
Celera1538,819,997 - 38,820,140UniSTS
RH 3.4 Map15289.9UniSTS
Cytogenetic Map15p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001427101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000038336   ⟹   ENSRNOP00000029528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1543,257,024 - 43,376,011 (-)Ensembl
mRatBN7.2 Ensembl1539,081,326 - 39,200,323 (-)Ensembl
Rnor_6.0 Ensembl1548,199,995 - 48,284,548 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109493   ⟹   ENSRNOP00000085503
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1539,068,584 - 39,200,323 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112734   ⟹   ENSRNOP00000077167
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1543,222,470 - 43,376,011 (-)Ensembl
mRatBN7.2 Ensembl1539,068,584 - 39,200,323 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120015   ⟹   ENSRNOP00000092747
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1543,247,814 - 43,376,011 (-)Ensembl
mRatBN7.2 Ensembl1539,067,804 - 39,200,323 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000129024   ⟹   ENSRNOP00000110153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1543,254,130 - 43,376,011 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000173136   ⟹   ENSRNOP00000105983
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1543,254,130 - 43,376,011 (-)Ensembl
RefSeq Acc Id: NM_001427100   ⟹   NP_001414029
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,243,507 - 43,376,011 (-)NCBI
RefSeq Acc Id: NM_001427101   ⟹   NP_001414030
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,243,507 - 43,376,011 (-)NCBI
RefSeq Acc Id: XM_039094008   ⟹   XP_038949936
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,243,503 - 43,375,874 (-)NCBI
mRatBN7.21539,067,809 - 39,200,350 (-)NCBI
RefSeq Acc Id: XM_039094009   ⟹   XP_038949937
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,243,503 - 43,375,874 (-)NCBI
mRatBN7.21539,067,809 - 39,200,352 (-)NCBI
RefSeq Acc Id: XM_039094010   ⟹   XP_038949938
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,243,503 - 43,375,874 (-)NCBI
mRatBN7.21539,067,809 - 39,200,353 (-)NCBI
RefSeq Acc Id: XM_039094013   ⟹   XP_038949941
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,243,503 - 43,375,874 (-)NCBI
mRatBN7.21539,067,809 - 39,200,341 (-)NCBI
RefSeq Acc Id: XM_039094014   ⟹   XP_038949942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,255,130 - 43,375,874 (-)NCBI
mRatBN7.21539,079,439 - 39,200,346 (-)NCBI
RefSeq Acc Id: XM_039094015   ⟹   XP_038949943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,255,130 - 43,375,874 (-)NCBI
mRatBN7.21539,079,439 - 39,200,348 (-)NCBI
RefSeq Acc Id: XM_039094016   ⟹   XP_038949944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,243,503 - 43,375,874 (-)NCBI
mRatBN7.21539,067,805 - 39,200,343 (-)NCBI
RefSeq Acc Id: XM_039094017   ⟹   XP_038949945
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,243,503 - 43,375,874 (-)NCBI
mRatBN7.21539,067,805 - 39,200,345 (-)NCBI
RefSeq Acc Id: XM_039094018   ⟹   XP_038949946
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,243,503 - 43,375,874 (-)NCBI
mRatBN7.21539,067,805 - 39,200,345 (-)NCBI
RefSeq Acc Id: XM_039094019   ⟹   XP_038949947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,255,130 - 43,375,874 (-)NCBI
mRatBN7.21539,079,439 - 39,200,349 (-)NCBI
RefSeq Acc Id: XM_039094020   ⟹   XP_038949948
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,243,503 - 43,375,874 (-)NCBI
mRatBN7.21539,067,805 - 39,200,345 (-)NCBI
RefSeq Acc Id: XM_039094021   ⟹   XP_038949949
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,243,503 - 43,375,874 (-)NCBI
mRatBN7.21539,067,805 - 39,200,346 (-)NCBI
RefSeq Acc Id: XM_063274287   ⟹   XP_063130357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,243,503 - 43,375,257 (-)NCBI
Ensembl Acc Id: ENSRNOP00000029528   ⟸   ENSRNOT00000038336
RefSeq Acc Id: XP_038949949   ⟸   XM_039094021
- Peptide Label: isoform X11
- UniProtKB: D3ZER1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949948   ⟸   XM_039094020
- Peptide Label: isoform X10
- UniProtKB: D3ZER1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949946   ⟸   XM_039094018
- Peptide Label: isoform X8
- UniProtKB: A0A8I5Y5F7 (UniProtKB/TrEMBL),   D3ZER1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949945   ⟸   XM_039094017
- Peptide Label: isoform X8
- UniProtKB: A0A8I5Y5F7 (UniProtKB/TrEMBL),   D3ZER1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949944   ⟸   XM_039094016
- Peptide Label: isoform X8
- UniProtKB: A0A8I5Y5F7 (UniProtKB/TrEMBL),   D3ZER1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949938   ⟸   XM_039094010
- Peptide Label: isoform X3
- UniProtKB: A6K6I6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949937   ⟸   XM_039094009
- Peptide Label: isoform X2
- UniProtKB: A6K6I6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949936   ⟸   XM_039094008
- Peptide Label: isoform X1
- UniProtKB: A6K6I6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949941   ⟸   XM_039094013
- Peptide Label: isoform X5
- UniProtKB: A6K6I6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949947   ⟸   XM_039094019
- Peptide Label: isoform X9
- UniProtKB: D3ZER1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949943   ⟸   XM_039094015
- Peptide Label: isoform X7
- UniProtKB: D3ZER1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949942   ⟸   XM_039094014
- Peptide Label: isoform X6
- UniProtKB: A0A8I6A3H7 (UniProtKB/TrEMBL),   A6K6I7 (UniProtKB/TrEMBL),   D3ZER1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000085503   ⟸   ENSRNOT00000109493
Ensembl Acc Id: ENSRNOP00000092747   ⟸   ENSRNOT00000120015
Ensembl Acc Id: ENSRNOP00000077167   ⟸   ENSRNOT00000112734
RefSeq Acc Id: XP_063130357   ⟸   XM_063274287
- Peptide Label: isoform X4
- UniProtKB: A6K6I6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414029   ⟸   NM_001427100
- Peptide Label: isoform 2
- UniProtKB: A6K6I6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414030   ⟸   NM_001427101
- Peptide Label: isoform 1
- UniProtKB: A0A8I6GJY0 (UniProtKB/TrEMBL),   A6K6I6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000105983   ⟸   ENSRNOT00000173136
Ensembl Acc Id: ENSRNOP00000110153   ⟸   ENSRNOT00000129024
Protein Domains
HNF-p1   Homeobox   POU-specific atypical

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZER1-F1-model_v2 AlphaFold D3ZER1 1-404 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306787 AgrOrtholog
BioCyc Gene G2FUF-13370 BioCyc
Ensembl Genes ENSRNOG00000013326 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038336 ENTREZGENE
  ENSRNOT00000038336.8 UniProtKB/TrEMBL
  ENSRNOT00000112734.2 UniProtKB/TrEMBL
  ENSRNOT00000120015 ENTREZGENE
  ENSRNOT00000120015.2 UniProtKB/TrEMBL
  ENSRNOT00000129024 ENTREZGENE
  ENSRNOT00000129024.1 UniProtKB/TrEMBL
  ENSRNOT00000173136 ENTREZGENE
  ENSRNOT00000173136.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.260.40 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro Cro/C1-type_HTH UniProtKB/TrEMBL
  HMBOX1 UniProtKB/TrEMBL
  HNF-1_N UniProtKB/TrEMBL
  HNF-1_POU UniProtKB/TrEMBL
  HNF_P1 UniProtKB/TrEMBL
  Homeodomain UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
  Lambda_DNA-bd UniProtKB/TrEMBL
NCBI Gene 305968 ENTREZGENE
PANTHER HOMEOBOX-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR14618 UniProtKB/TrEMBL
Pfam HNF-1_N UniProtKB/TrEMBL
  Homeobox UniProtKB/TrEMBL
PhenoGen Hmbox1 PhenoGen
PROSITE HNF_P1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
  POU_4 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013326 RatGTEx
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain_like UniProtKB/TrEMBL
  Lambda_like_DNA UniProtKB/TrEMBL
UniProt A0A8I5Y5F7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A3H7 ENTREZGENE
  A0A8I6GJY0 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LWA0_RAT UniProtKB/TrEMBL
  A0ABK0LX89_RAT UniProtKB/TrEMBL
  A6K6I6 ENTREZGENE, UniProtKB/TrEMBL
  A6K6I7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZER1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Hmbox1  homeobox containing 1  RGD1306787_predicted  similar to hypothetical protein FLJ21616 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1306787_predicted  similar to hypothetical protein FLJ21616 (predicted)  LOC305968_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC305968_predicted  similar to hypothetical protein FLJ21616 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL