Atp8b4 (ATPase phospholipid transporting 8B4 (putative)) - Rat Genome Database

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Gene: Atp8b4 (ATPase phospholipid transporting 8B4 (putative)) Rattus norvegicus
Analyze
Symbol: Atp8b4
Name: ATPase phospholipid transporting 8B4 (putative)
RGD ID: 1306712
Description: Predicted to enable ATPase-coupled intramembrane lipid transporter activity. Predicted to be involved in Golgi organization and phospholipid translocation. Predicted to be located in Golgi apparatus. Predicted to be part of phospholipid-translocating ATPase complex. Predicted to be active in plasma membrane and trans-Golgi network. Orthologous to human ATP8B4 (ATPase phospholipid transporting 8B4 (putative)); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ATPase, class I, type 8B, member 4; LOC311396; MGC114491; probable phospholipid-transporting ATPase IM
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83134,008,367 - 134,212,394 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3134,009,580 - 134,210,260 (-)EnsemblGRCr8
mRatBN7.23113,554,979 - 113,757,635 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3113,556,192 - 113,757,225 (-)EnsemblmRatBN7.2
Rnor_6.03118,591,560 - 118,968,210 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3118,591,880 - 118,959,850 (-)Ensemblrn6Rnor6.0
Rnor_5.03125,118,786 - 125,496,913 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43113,781,099 - 113,943,532 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3112,402,538 - 112,609,732 (-)NCBICelera
RGSC_v3.13113,686,500 - 113,707,372 (-)NCBI
Cytogenetic Map3q36NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:20947505  


Genomics

Comparative Map Data
Atp8b4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83134,008,367 - 134,212,394 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3134,009,580 - 134,210,260 (-)EnsemblGRCr8
mRatBN7.23113,554,979 - 113,757,635 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3113,556,192 - 113,757,225 (-)EnsemblmRatBN7.2
Rnor_6.03118,591,560 - 118,968,210 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3118,591,880 - 118,959,850 (-)Ensemblrn6Rnor6.0
Rnor_5.03125,118,786 - 125,496,913 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43113,781,099 - 113,943,532 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3112,402,538 - 112,609,732 (-)NCBICelera
RGSC_v3.13113,686,500 - 113,707,372 (-)NCBI
Cytogenetic Map3q36NCBI
ATP8B4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381549,858,238 - 50,181,854 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1549,858,238 - 50,182,817 (-)Ensemblhg38GRCh38
GRCh371550,150,435 - 50,411,430 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361547,937,727 - 48,198,711 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341547,937,726 - 48,198,711NCBI
Celera1527,043,704 - 27,304,104 (-)NCBICelera
Cytogenetic Map15q21.2NCBI
HuRef1526,981,828 - 27,242,532 (-)NCBIHuRef
CHM1_11550,268,431 - 50,528,997 (-)NCBICHM1_1
T2T-CHM13v2.01547,666,646 - 47,990,075 (-)NCBIT2T-CHM13v2.0
Atp8b4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392126,162,893 - 126,342,589 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2126,162,893 - 126,342,594 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382126,320,973 - 126,500,669 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2126,320,973 - 126,500,674 (-)Ensemblmm10GRCm38
MGSCv372126,146,709 - 126,317,289 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362126,012,414 - 126,192,115 (-)NCBIMGSCv36mm8
Celera2127,555,887 - 127,728,606 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.76NCBI
Atp8b4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554094,183,493 - 4,381,356 (+)Ensembl
ChiLan1.0NW_0049554094,148,110 - 4,383,309 (+)NCBIChiLan1.0ChiLan1.0
ATP8B4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21639,095,589 - 39,362,124 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11543,279,499 - 43,536,603 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01528,803,848 - 29,060,526 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11547,127,325 - 47,389,559 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1547,129,277 - 47,389,559 (-)EnsemblpanPan2panpan1.1
ATP8B4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13015,885,680 - 16,122,486 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3015,887,677 - 16,122,989 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3015,812,094 - 16,048,684 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03016,030,527 - 16,266,370 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3016,030,561 - 16,258,516 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13015,953,137 - 16,188,955 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03016,068,395 - 16,306,433 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03016,174,848 - 16,412,807 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Atp8b4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864094,150,968 - 94,379,397 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647112,000,789 - 12,216,039 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647111,999,100 - 12,216,076 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP8B4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1121,650,951 - 121,914,712 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11121,629,072 - 121,914,633 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21135,295,195 - 135,487,660 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP8B4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12633,190,645 - 33,510,406 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2633,256,406 - 33,446,584 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666048107,701,733 - 107,959,478 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp8b4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247319,964,909 - 10,162,739 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247319,934,010 - 10,164,530 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp8b4
1559 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:188
Count of miRNA genes:135
Interacting mature miRNAs:152
Transcripts:ENSRNOT00000055975
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3102200529115665732Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)396127817115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)384091273129091273Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)373376539118376539Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)380800231114297550Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3112287552135181505Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat

Markers in Region
MHAa59h6.seq  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23110,036,472 - 110,036,624 (+)MAPPERmRatBN7.2
Rnor_6.03118,786,253 - 118,786,404NCBIRnor6.0
Rnor_5.03125,315,841 - 125,315,992UniSTSRnor5.0
RGSC_v3.43109,887,883 - 109,888,034UniSTSRGSC3.4
Celera3108,921,698 - 108,921,849UniSTS
Cytogenetic Map3q36UniSTS
AU048488  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23113,660,761 - 113,660,880 (+)MAPPERmRatBN7.2
Rnor_6.03118,872,436 - 118,872,554NCBIRnor6.0
Rnor_5.03125,402,024 - 125,402,142UniSTSRnor5.0
RGSC_v3.43113,885,083 - 113,885,201UniSTSRGSC3.4
Celera3112,507,754 - 112,507,872UniSTS
Cytogenetic Map3q36UniSTS
px-61b6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23113,738,398 - 113,738,527 (+)MAPPERmRatBN7.2
Rnor_6.03118,946,592 - 118,946,720NCBIRnor6.0
Rnor_5.03125,478,352 - 125,478,480UniSTSRnor5.0
RGSC_v3.43113,964,060 - 113,964,188UniSTSRGSC3.4
Celera3112,584,590 - 112,584,718UniSTS
Cytogenetic Map3q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 151 91 90 59 92 59 6 352 192 11 128 77 92 31 16 16

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001430434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC098940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC158638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000055975
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3118,592,389 - 118,611,578 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086357   ⟹   ENSRNOP00000075586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3134,009,584 - 134,031,111 (-)Ensembl
mRatBN7.2 Ensembl3113,556,196 - 113,577,723 (-)Ensembl
Rnor_6.0 Ensembl3118,591,880 - 118,635,268 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092750   ⟹   ENSRNOP00000075998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3134,009,580 - 134,210,260 (-)Ensembl
mRatBN7.2 Ensembl3113,556,192 - 113,757,225 (-)Ensembl
Rnor_6.0 Ensembl3118,641,220 - 118,959,850 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104093   ⟹   ENSRNOP00000084035
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3113,556,192 - 113,757,160 (-)Ensembl
RefSeq Acc Id: XM_039106841   ⟹   XP_038962769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,008,367 - 134,210,112 (-)NCBI
mRatBN7.23113,554,979 - 113,756,737 (-)NCBI
RefSeq Acc Id: XM_039106842   ⟹   XP_038962770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,008,367 - 134,212,394 (-)NCBI
mRatBN7.23113,554,979 - 113,757,635 (-)NCBI
RefSeq Acc Id: XM_039106843   ⟹   XP_038962771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,008,367 - 134,203,845 (-)NCBI
mRatBN7.23113,554,979 - 113,750,474 (-)NCBI
RefSeq Acc Id: XM_039106844   ⟹   XP_038962772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,008,367 - 134,210,218 (-)NCBI
mRatBN7.23113,554,979 - 113,756,844 (-)NCBI
RefSeq Acc Id: XM_039106846   ⟹   XP_038962774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,008,367 - 134,210,113 (-)NCBI
mRatBN7.23113,554,979 - 113,756,738 (-)NCBI
RefSeq Acc Id: XM_039106847   ⟹   XP_038962775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,008,367 - 134,210,113 (-)NCBI
mRatBN7.23113,554,979 - 113,756,737 (-)NCBI
RefSeq Acc Id: XM_039106848   ⟹   XP_038962776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,008,367 - 134,152,869 (-)NCBI
mRatBN7.23113,554,979 - 113,699,490 (-)NCBI
RefSeq Acc Id: XM_039106850   ⟹   XP_038962778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,040,751 - 134,210,115 (-)NCBI
mRatBN7.23113,587,416 - 113,756,739 (-)NCBI
RefSeq Acc Id: XM_039106851   ⟹   XP_038962779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,008,367 - 134,094,083 (-)NCBI
mRatBN7.23113,554,979 - 113,640,701 (-)NCBI
RefSeq Acc Id: XM_063285309   ⟹   XP_063141379
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,008,367 - 134,203,848 (-)NCBI
RefSeq Acc Id: XM_063285310   ⟹   XP_063141380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,008,367 - 134,210,219 (-)NCBI
RefSeq Acc Id: XM_063285312   ⟹   XP_063141382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,008,367 - 134,180,582 (-)NCBI
RefSeq Acc Id: XM_063285313   ⟹   XP_063141383
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83134,008,367 - 134,059,639 (-)NCBI
Ensembl Acc Id: ENSRNOP00000075998   ⟸   ENSRNOT00000092750
Ensembl Acc Id: ENSRNOP00000075586   ⟸   ENSRNOT00000086357
RefSeq Acc Id: XP_038962770   ⟸   XM_039106842
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038962772   ⟸   XM_039106844
- Peptide Label: isoform X1
- UniProtKB: A0A1B0GWR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962774   ⟸   XM_039106846
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038962775   ⟸   XM_039106847
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038962769   ⟸   XM_039106841
- Peptide Label: isoform X1
- UniProtKB: A0A1B0GWR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962771   ⟸   XM_039106843
- Peptide Label: isoform X1
- UniProtKB: A0A1B0GWR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962776   ⟸   XM_039106848
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZYK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962779   ⟸   XM_039106851
- Peptide Label: isoform X6
- UniProtKB: A6HPY3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962778   ⟸   XM_039106850
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000084035   ⟸   ENSRNOT00000104093
RefSeq Acc Id: XP_063141380   ⟸   XM_063285310
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063141379   ⟸   XM_063285309
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063141382   ⟸   XM_063285312
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZYK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141383   ⟸   XM_063285313
- Peptide Label: isoform X7
Protein Domains
P-type ATPase C-terminal   P-type ATPase N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1B0GWR9-F1-model_v2 AlphaFold A0A1B0GWR9 1-590 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306712 AgrOrtholog
BioCyc Gene G2FUF-48026 BioCyc
Ensembl Genes ENSRNOG00000031598 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000086357.3 UniProtKB/TrEMBL
  ENSRNOT00000092750 ENTREZGENE
  ENSRNOT00000092750.2 UniProtKB/TrEMBL
  ENSRNOT00000104093.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7456884 IMAGE-MGC_LOAD
InterPro ATPase_P-typ_cyto_dom_N UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  P-type_ATPase_IV UniProtKB/TrEMBL
  P-type_ATPase_N UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/TrEMBL
  P_typ_ATPase_c UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
MGC_CLONE MGC:187554 IMAGE-MGC_LOAD
NCBI Gene 311396 ENTREZGENE
PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE UniProtKB/TrEMBL
  PTHR24092:SF80 UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/TrEMBL
  PhoLip_ATPase_C UniProtKB/TrEMBL
  PhoLip_ATPase_N UniProtKB/TrEMBL
PhenoGen Atp8b4 PhenoGen
PRINTS CATATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000031598 RatGTEx
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81660 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
UniProt A0A1B0GWR9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZYK3 ENTREZGENE, UniProtKB/TrEMBL
  A6HPY3 ENTREZGENE, UniProtKB/TrEMBL
  Q4KLY5_RAT UniProtKB/TrEMBL
UniProt Secondary A0A0G2KAZ5 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Atp8b4  ATPase phospholipid transporting 8B4 (putative)  Atp8b4  ATPase, class I, type 8B, member 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Atp8b4  ATPase, class I, type 8B, member 4  Atp8b4_predicted  ATPase, class I, type 8B, member 4 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Atp8b4_predicted  ATPase, class I, type 8B, member 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED