Tmem184a (transmembrane protein 184A)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Tmem184a (transmembrane protein 184A) Rattus norvegicus

Analyze

Symbol:

Tmem184a

Name:

transmembrane protein 184A

RGD ID:

1306702

Description:

Predicted to enable heparin binding activity. Predicted to act upstream of or within germ-line sex determination; regulation of protein localization; and regulation of secretion. Located in plasma membrane. Orthologous to human TMEM184A (transmembrane protein 184A); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC304325; RGD1306702; similar to hypothetical protein MGC9712

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM184A (transmembrane protein 184A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tmem184a (transmembrane protein 184a)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem184a (transmembrane protein 184A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM184A (transmembrane protein 184A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM184A (transmembrane protein 184A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem184a (transmembrane protein 184A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM184A (transmembrane protein 184A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM184A (transmembrane protein 184A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem184a (transmembrane protein 184A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TMEM184B (transmembrane protein 184B)	HGNC	OrthoDB
Alliance orthologs ³
Mus musculus (house mouse):	Tmem184a (transmembrane protein 184a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TMEM184A (transmembrane protein 184A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmem184a (transmembrane protein 184a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG12004	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F40E10.6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YKR051W	Alliance	DIOPT (InParanoid\|OrthoInspector\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	12	14,817,508 - 14,833,109 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	14,822,898 - 14,832,065 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	15,632,996 - 15,641,059 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	12	16,256,750 - 16,264,812 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	12	15,282,173 - 15,290,232 (+)	NCBI	Rnor_WKY
Rnor_6.0	12	16,906,863 - 16,924,143 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	16,912,249 - 16,921,426 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	18,897,913 - 18,912,334 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	15,301,547 - 15,309,858 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	15,331,474 - 15,339,785 (+)	NCBI
Celera	12	16,582,837 - 16,590,949 (+)	NCBI		Celera
Cytogenetic Map	12	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

dibutyl phthalate (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

paracetamol (EXP)

perfluorononanoic acid (ISO)

pirinixic acid (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

trichloroethene (EXP)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

germ-line sex determination (ISO)

regulation of protein localization (ISO)

regulation of secretion (ISO)

Cellular Component

cytoplasmic vesicle membrane (ISS)

early endosome membrane (IBA,ISO,ISS)

endosome (ISO,ISS)

membrane (IEA)

perinuclear region of cytoplasm (ISS)

plasma membrane (IDA)

secretory granule membrane (ISO,ISS)

transport vesicle membrane (IEA)

Molecular Function

heparin binding (ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Transmembrane Protein 184A Is a Receptor Required for Vascular Smooth Muscle Cell Responses to Heparin.	Pugh RJ, etal., J Biol Chem. 2016 Mar 4;291(10):5326-41. doi: 10.1074/jbc.M115.681122. Epub 2016 Jan 14.
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:18321981	PMID:19097053

Genomics

Comparative Map Data

Tmem184a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	12	14,817,508 - 14,833,109 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	14,822,898 - 14,832,065 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	15,632,996 - 15,641,059 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	12	16,256,750 - 16,264,812 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	12	15,282,173 - 15,290,232 (+)	NCBI	Rnor_WKY
Rnor_6.0	12	16,906,863 - 16,924,143 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	16,912,249 - 16,921,426 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	18,897,913 - 18,912,334 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	15,301,547 - 15,309,858 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	15,331,474 - 15,339,785 (+)	NCBI
Celera	12	16,582,837 - 16,590,949 (+)	NCBI		Celera
Cytogenetic Map	12	q11	NCBI

TMEM184A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	1,542,235 - 1,556,205 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	7	1,542,235 - 1,560,821 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	1,581,871 - 1,595,841 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	1,548,397 - 1,562,592 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	1,549,127 - 1,563,240 (-)	NCBI		Celera
Cytogenetic Map	7	p22.3	NCBI
HuRef	7	1,502,353 - 1,516,548 (-)	NCBI		HuRef
CHM1_1	7	1,581,454 - 1,595,649 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	1,654,363 - 1,668,333 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	1,634,279 - 1,648,474 (-)	NCBI

Tmem184a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	139,790,707 - 139,805,725 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	139,788,240 - 139,805,672 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	139,804,951 - 139,819,969 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	139,802,485 - 139,819,917 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	140,280,906 - 140,290,237 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	140,057,426 - 140,066,716 (-)	NCBI		MGSCv36	mm8
Celera	5	136,859,881 - 136,869,174 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI

Tmem184a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955460	9,169,599 - 9,176,622 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955460	9,169,599 - 9,182,701 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM184A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	7	1,912,975 - 1,922,316 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	1,913,700 - 1,922,031 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	7	1,793,830 - 1,803,709 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

TMEM184A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	15,408,101 - 15,419,380 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	15,412,556 - 15,422,004 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	16,875,827 - 16,887,070 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	15,534,101 - 15,545,346 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	15,538,804 - 15,544,804 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	15,336,892 - 15,347,723 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	15,263,667 - 15,274,914 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	15,550,661 - 15,561,906 (+)	NCBI		UU_Cfam_GSD_1.0

Tmem184a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	143,333,191 - 143,351,094 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936754	1,659,157 - 1,673,079 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936754	1,659,260 - 1,675,137 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM184A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	1,034,500 - 1,044,242 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	1,034,662 - 1,044,259 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	1,149,554 - 1,159,111 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM184A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	20,035,649 - 20,053,708 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	20,044,363 - 20,052,915 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666090	1,663,463 - 1,673,978 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem184a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	27,009,483 - 27,016,509 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	27,009,573 - 27,025,933 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tmem184a
147 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	83
Count of miRNA genes:	65
Interacting mature miRNAs:	73
Transcripts:	ENSRNOT00000001718
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	1	19611090	Rat
10755457	Coatc14	Coat color QTL 14		0.01759	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	12	1	22591684	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	23297788	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	1	29333307	Rat
1598855	Bp294	Blood pressure QTL 294	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	1	34851688	Rat
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	1	42110980	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	1	42110980	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	1	42450532	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	1	44465750	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	1	44503507	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	1	44503507	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	1172005	46172005	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	5564495	46669029	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564498	46669029	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	6107579	46669029	Rat
1600391	Edcs2	Endometrial carcinoma susceptibility QTL2	3.5	0.01	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	12	6833190	17870186	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	7196730	46669029	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	8449490	28302290	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	8525423	28064601	Rat
1300157	Rf21	Renal function QTL 21	4.4		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	12	9318216	32103380	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	9603277	46669029	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	10474137	46669029	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	10474137	46669029	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	11073825	24234895	Rat
1331755	Bp219	Blood pressure QTL 219	3.041		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	28064557	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	45055165	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	12351619	46669029	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	12812385	46669029	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	12812385	46669029	Rat
7204484	Bp358	Blood pressure QTL 358		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	13008296	19212979	Rat
1549902	Bp269	Blood pressure QTL 269			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	13182736	46669029	Rat
1549912	Bp268	Blood pressure QTL 268			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	13182736	46669029	Rat
2302060	Pia37	Pristane induced arthritis QTL 37	6.1	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	13198157	46669029	Rat
61416	Pia4	Pristane induced arthritis QTL 4	8.4		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	12	13635523	30827399	Rat
61421	Cia12	Collagen induced arthritis QTL 12	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	13635523	35682913	Rat

Markers in Region

Tmem184a

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	14,829,303 - 14,829,966 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	16,918,665 - 16,919,327	NCBI	Rnor6.0
Rnor_5.0	12	18,909,472 - 18,910,134	UniSTS	Rnor5.0
RGSC_v3.4	12	15,307,096 - 15,307,758	UniSTS	RGSC3.4
Celera	12	16,588,138 - 16,588,849	UniSTS
Cytogenetic Map	12	q11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High											1
Medium	3									5	32	3
Low		2	47	39	19	39	2	2	6	30	8	8	2
Below cutoff		20	6	2		2	5	6	57				5

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC098056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000001718 ⟹ ENSRNOP00000001718

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	14,822,898 - 14,832,065 (+)	Ensembl
Rnor_6.0 Ensembl	12	16,913,312 - 16,921,426 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000085936 ⟹ ENSRNOP00000073059

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	14,823,965 - 14,831,523 (+)	Ensembl
Rnor_6.0 Ensembl	12	16,912,249 - 16,921,082 (+)	Ensembl

RefSeq Acc Id:

NM_001025413 ⟹ NP_001020584

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	14,823,965 - 14,832,066 (+)	NCBI
Rnor_6.0	12	16,913,312 - 16,921,427 (+)	NCBI
Rnor_5.0	12	18,897,913 - 18,912,334 (+)	NCBI
RGSC_v3.4	12	15,301,547 - 15,309,858 (+)	RGD
Celera	12	16,582,837 - 16,590,949 (+)	RGD

Sequence:

show sequence

CTGCAGATGAGGAATGCATCAGGGTTTCTGAAGACAGCTGGAGCCCCCCTTGTGTCAGCGACCT
GGCTTCCGCCCAGCCCCCCTCCGGCAATGCCCATGGTGGCAGCCGGGCCACAGATGGAGCGCGT
GGACAACGGCTCGCAGGGGGCCCCCCAGCTCTTCCTCACCAGCGCATTGGCCCGAGGCGTTTCA
GGCGTATTTGTATGGACTGCTCTGCTGCTAACCGGCCACCAGATCTACTCCCACCTGCGTTCTT
ACACCGTCCCGCGAGAGCAGCGCTTCGTCATCCGCCTCCTATTCATTGTGCCCATCTACGCCTT
CGACTCATGGCTCAGCCTCCTCCTCCTGGGGGGCCATCCTTACTACGTCTACTTCGACTCTGTG
CGAGACTGCTACGAAGCATTTGTCATCTACAGTTTCCTGACCTTGTGCTTCCAATATCTGGGGG
GCGAGAGCGCCATCATGGCTGAGATCAGAGGCAAACCTATCAGGTCCAGCTGCTTCTATGGGAC
CTGCTGCCTCCGTGGTATGTCCTACTCCATCACTTTCTTACGCTTCTGCAAACAGGCCACACTC
CAGTTCTGCATTGTGAAACCCGTTATGGCGCTGATCACCATCATCCTCCAGGCTTTTGACAAAT
ACCACGATGGCGACTTCAACATCCACAGCGGCTACCTGTACGTGACCCTCGTGTACAACGCCTC
TGTTAGCCTGGCTCTCTACGCTCTGTTCCTTTTCTACTTCGCTACCAGGGACCTCCTGAGACCA
TTCGAGCCAGTACTCAAGTTCCTCACCATCAAAGCCATCATCTTCCTCTCCTTCTGGCAAGGAA
TGCTGTTGGCCATCTTGGAGAGGTGTGGGGTCATCCCTGAGGTCCAGGCCGTGGACGGCACCAG
GGTTGGGGCTGGTACCCTAGCCGCTGGCTACCAGAATTTCCTCATCTGTATTGAGATGCTGTTT
GCCTCCCTTGCGCTGCGTTACGCCTTCCCCAGCCAGGTGTATTCAGAAAAGAAGAACTCACCAG
CCCCACCAGCTCCTATGCAAAGCATATCCAGTGGCTTAAAGGAGACCATCAGCCCACAGGACAT
TGTCCAGGATGCCATTCACAACTTCTCACCAGCCTACCAGCAGTATACACAGCAGTCTACACAT
GAAGCCCCTGGGCCTGGCCAGGGCGGGCACCCATCGCCCAGCACCCACCCTGGCCCAGCCAGTG
GCTCTGGAGGTGGTAAGAAGAGTCGCAACATAGAGAAACGCATGCTGATCCCCTCAGAGGACCT
GTAGGGCGTGGGGTGTGTGGAGCCTAGCTGGGGTCCAGCTTGCCTAGGTTTCTAGGGTGGGCAA
ACGGGGTCCCCACCTACCAGCATCTATGGACAGAGGCCCAGCCTCTCCTGAGAGCCTCACTGTG
GTGCTCACAGGGCCTCTCTATTCCATGTACAGCCCAGAGTGAAGTCACCTGGGCGAATTGGACA
AACCCAAGGACCCAATGGGATGTCTTATTACAGCCTGCAGGTGGAGCGGTGGGTTGGCCATTCC
CTCCGTGGACAGAAGAGACAGGTGGTTAAATCTTAAGCTGTGCAGTGACAGACAGGGATGGCCA
GGCAAGATTGGGCCCAGCCACCGAAGGCTAGGGAGTCATGTAGCCAGGGCCTAGCTGTGGCTAT
CTTGGGTGCGTGAAGAAGACCCCTTGCCCTTGCATTTTAATATAGGTGTTTGGCGAAGCTCTTG
CAGGGACAGCCTCGCCTATTTAGTACAACAGAGTTGCCAGTGTGCCAGCCTGCCAGCTACTAGC
TTCTTATTTATAGATAAACACCTTGCATTTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006248938 ⟹ XP_006249000

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	14,822,946 - 14,833,109 (+)	NCBI
Rnor_6.0	12	16,912,283 - 16,922,459 (+)	NCBI
Rnor_5.0	12	18,897,913 - 18,912,334 (+)	NCBI

Sequence:

show sequence

TCCGCCCCTCCCTCAGCCTGAAGCCCAGGTGGGCCACTGGCCAGGTGAGGCCCTGTGTGCCTTT
CCTAGCCTAGCGCTACCCTCCTGAGGCCAGCCTTGCCCCAACCTGAAGCTTGGTCTCCACTGGG
GGGCCACATGGCCTAGTGAATGACCAGCCAGGCTTCCCCAGAGGAGGCTAGGCCTCCAAGGCCC
GGGCCAAAGAGCTTCCTGCTCACAGAGATGAGGAATGCATCAGGGTTTCTGAAGACAGCTGGAG
CCCCCCTTGTGTCAGCGACCTGGCTTCCGCCCAGCCCCCCTCCGGCAATGCCCATGGTGGCAGC
CGGGCCACAGATGGAGCGCGTGGACAACGGCTCGCAGGGGGCCCCCCAGCTCTTCCTCACCAGC
GCATTGGCCCGAGGCGTTTCAGGCGTATTTGTATGGACTGCTCTGCTGCTAACCGGCCACCAGA
TCTACTCCCACCTGCGTTCTTACACCGTCCCGCGAGAGCAGCGCTTCGTCATCCGCCTCCTATT
CATTGTGCCCATCTACGCCTTCGACTCATGGCTCAGCCTCCTCCTCCTGGGGGGCCATCCTTAC
TACGTCTACTTCGACTCTGTGCGAGACTGCTACGAAGCATTTGTCATCTACAGTTTCCTGACCT
TGTGCTTCCAATATCTGGGGGGCGAGAGCGCCATCATGGCTGAGATCAGAGGCAAACCTATCAG
GTCCAGCTGCTTCTATGGGACCTGCTGCCTCCGTGGTATGTCCTACTCCATCACTTTCTTACGC
TTCTGCAAACAGGCCACACTCCAGTTCTGCATTGTGAAACCCGTTATGGCGCTGATCACCATCA
TCCTCCAGGCTTTTGACAAATACCACGATGGCGACTTCAACATCCACAGCGGCTACCTGTACGT
GACCCTCGTGTACAACGCCTCTGTTAGCCTGGCTCTCTACGCTCTGTTCCTTTTCTACTTCGCT
ACCAGGGACCTCCTGAGACCATTCGAGCCAGTACTCAAGTTCCTCACCATCAAAGCCATCATCT
TCCTCTCCTTCTGGCAAGGAATGCTGTTGGCCATCTTGGAGAGGTGTGGGGTCATCCCTGAGGT
CCAGGCCGTGGACGGCACCAGGGTTGGGGCTGGTACCCTAGCCGCTGGCTACCAGAATTTCCTC
ATCTGTATTGAGATGCTGTTTGCCTCCCTTGCGCTGCGTTACGCCTTCCCCAGCCAGGTGTATT
CAGAAAAGAAGAACTCACCAGCCCCACCAGCTCCTATGCAAAGCATATCCAGTGGCTTAAAGGA
GACCATCAGCCCACAGGACATTGTCCAGGATGCCATTCACAACTTCTCACCAGCCTACCAGCAG
TATACACAGCAGTCTACACATGAAGCCCCTGGGCCTGGCCAGGGCGGGCACCCATCGCCCAGCA
CCCACCCTGGCCCAGCCAGTGGCTCTGGAGGTGGTAAGAAGAGTCGCAACATAGAGAAACGCAT
GCTGATCCCCTCAGAGGACCTGTAGGGCGTGGGGTGTGTGGAGCCTAGCTGGGGTCCAGCTTGC
CTAGGTTTCTAGGGTGGGCAAACGGGGTCCCCACCTACCAGCATCTATGGACAGAGGCCCAGCC
TCTCCTGAGAGCCTCACTGTGGTGCTCACAGGGCCTCTCTATTCCATGTACAGCCCAGAGTGAA
GTCACCTGGGCGAATTGGACAAACCCAAGGACCCAATGGGATGTCTTATTACAGCCTGCAGGTG
GAGCGGTGGGTTGGCCATTCCCTCCGTGGACAGAAGAGACAGGTGGTTAAATCTTAAGCTGTGC
AGTGACAGACAGGGATGGCCAGGCAAGATTGGGCCCAGCCACCGAAGGCTAGGGAGTCATGTAG
CCAGGGCCTAGCTGTGGCTATCTTGGGTGCGTGAAGAAGACCCCTTGCCCTTGCATTTTAATAT
AGGTGTTTGGCGAAGCTCTTGCAGGGACAGCCTCGCCTATTTAGTACAACAGAGTTGCCAGTGT
GCCAGCCTGCCAGCTACTAGCTTCTTATTTATAGATAAACACCTTGCATTTTTCTAGACTTTTG
TCGGGCCTTCTGTTCTTATGGGGGCTTGATTCTGAGTGACGACGGGTCTCTCTCTACATTGTGG
CCTGTGGAGCAAGTCTGGGTGTCGGGAACAGCTAAGACACACATCATGATGTGGCTCAGAGCAG
TACATGGCAAAGAAGGTGGACTTTGCCACGAGATGACCAGCTCTGTGACACAATGGGAGCTGGG
GCAGTCAGGTGACTCCCTGAACTTCAGGTTGGCCCCACCCTAAAGTGGTTTATGAGTCCATGGC
ACAACCTAGCGTGCCCCGTACACGGACTCAAGCCTTCGAGCCCGCCTTCTCTCTTGCCTCTTCC
TGTATACCAGATCCAGTGCCCAGGAAGTCTGAGATAGGCTCAGTATCCCTAGCTAGACTGGCCT
TAGAAACACAGGGGACAAAGGCAGACCAGGCAAGCAGCTAGACAGAAACGCCACCCACCCAGGA
ACAGTATCCCTTGCCTAGTTGTCAGTTCCCACAGCCTGTAGGAATATCAGACAAAGGGGGTGGA
GGGGGTGTTTCCCTGCCTTCTTATTCTCAGGGCCCAGAGATAGGAGGAGTCAAGGCCATTGGCT
TCTCCCTGACCCTTCTGGGCTGATAAGATAGACTCTATTCCTTCCTGCACCTGCCTGTAAAAAG
CCACCCACACCTACTTATCTGCCTTCTGGGACTGGCAGGCACAGAGGGTGGCCCTCAGCCCACA
CAGTCAGCAGGGCTGGGAGGGGCTCTGTACTCCCAAAGACCTTCACTCTTGAGCCCATGGCAGG
CTCTGTGCCTGCCCGCTGGCCTTCAAATATGAGGAATCTTACAGCTTGGCCAGCAGGGGGCTGC
CTTCCTCTGCCCTGGAGAGGCTATGTGGCCATGAACAAGCTAGACAGGTTCCTCTCCCACAAGC
CCAGATACAAAGTAGGGCCCTGGACAGTCAGTTGGCATCACTAAATACCCACACATGCACCAGG
AACTTCTGTACCCTGGCCCTGGGGAAGCTGTGCTAACCAAAGAAATTAAACAAGTTGCCCAAGG

hide sequence

RefSeq Acc Id:

XM_006248939 ⟹ XP_006249001

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	14,817,508 - 14,833,109 (+)	NCBI
Rnor_6.0	12	16,906,863 - 16,922,459 (+)	NCBI
Rnor_5.0	12	18,897,913 - 18,912,334 (+)	NCBI

Sequence:

show sequence

TCTGAGAAGCCATGCTTCGGCAGCAGCAATAGTCCAAGGGGTCTGGGCTGCCCCAGATGCTGAG
AAGAGGACAGCAGAGGGCTGCAGACCACACTGAGGCAGGACCTCATCCAGCCCAGAAACTACAG
TGTGTACTGAGAAACCAAAGCAACGCACCAGCCCAGTGGGCCCTGCCAGCTGCCCAGAGCCACC
AGGGAGATGAGGAATGCATCAGGGTTTCTGAAGACAGCTGGAGCCCCCCTTGTGTCAGCGACCT
GGCTTCCGCCCAGCCCCCCTCCGGCAATGCCCATGGTGGCAGCCGGGCCACAGATGGAGCGCGT
GGACAACGGCTCGCAGGGGGCCCCCCAGCTCTTCCTCACCAGCGCATTGGCCCGAGGCGTTTCA
GGCGTATTTGTATGGACTGCTCTGCTGCTAACCGGCCACCAGATCTACTCCCACCTGCGTTCTT
ACACCGTCCCGCGAGAGCAGCGCTTCGTCATCCGCCTCCTATTCATTGTGCCCATCTACGCCTT
CGACTCATGGCTCAGCCTCCTCCTCCTGGGGGGCCATCCTTACTACGTCTACTTCGACTCTGTG
CGAGACTGCTACGAAGCATTTGTCATCTACAGTTTCCTGACCTTGTGCTTCCAATATCTGGGGG
GCGAGAGCGCCATCATGGCTGAGATCAGAGGCAAACCTATCAGGTCCAGCTGCTTCTATGGGAC
CTGCTGCCTCCGTGGTATGTCCTACTCCATCACTTTCTTACGCTTCTGCAAACAGGCCACACTC
CAGTTCTGCATTGTGAAACCCGTTATGGCGCTGATCACCATCATCCTCCAGGCTTTTGACAAAT
ACCACGATGGCGACTTCAACATCCACAGCGGCTACCTGTACGTGACCCTCGTGTACAACGCCTC
TGTTAGCCTGGCTCTCTACGCTCTGTTCCTTTTCTACTTCGCTACCAGGGACCTCCTGAGACCA
TTCGAGCCAGTACTCAAGTTCCTCACCATCAAAGCCATCATCTTCCTCTCCTTCTGGCAAGGAA
TGCTGTTGGCCATCTTGGAGAGGTGTGGGGTCATCCCTGAGGTCCAGGCCGTGGACGGCACCAG
GGTTGGGGCTGGTACCCTAGCCGCTGGCTACCAGAATTTCCTCATCTGTATTGAGATGCTGTTT
GCCTCCCTTGCGCTGCGTTACGCCTTCCCCAGCCAGGTGTATTCAGAAAAGAAGAACTCACCAG
CCCCACCAGCTCCTATGCAAAGCATATCCAGTGGCTTAAAGGAGACCATCAGCCCACAGGACAT
TGTCCAGGATGCCATTCACAACTTCTCACCAGCCTACCAGCAGTATACACAGCAGTCTACACAT
GAAGCCCCTGGGCCTGGCCAGGGCGGGCACCCATCGCCCAGCACCCACCCTGGCCCAGCCAGTG
GCTCTGGAGGTGGTAAGAAGAGTCGCAACATAGAGAAACGCATGCTGATCCCCTCAGAGGACCT
GTAGGGCGTGGGGTGTGTGGAGCCTAGCTGGGGTCCAGCTTGCCTAGGTTTCTAGGGTGGGCAA
ACGGGGTCCCCACCTACCAGCATCTATGGACAGAGGCCCAGCCTCTCCTGAGAGCCTCACTGTG
GTGCTCACAGGGCCTCTCTATTCCATGTACAGCCCAGAGTGAAGTCACCTGGGCGAATTGGACA
AACCCAAGGACCCAATGGGATGTCTTATTACAGCCTGCAGGTGGAGCGGTGGGTTGGCCATTCC
CTCCGTGGACAGAAGAGACAGGTGGTTAAATCTTAAGCTGTGCAGTGACAGACAGGGATGGCCA
GGCAAGATTGGGCCCAGCCACCGAAGGCTAGGGAGTCATGTAGCCAGGGCCTAGCTGTGGCTAT
CTTGGGTGCGTGAAGAAGACCCCTTGCCCTTGCATTTTAATATAGGTGTTTGGCGAAGCTCTTG
CAGGGACAGCCTCGCCTATTTAGTACAACAGAGTTGCCAGTGTGCCAGCCTGCCAGCTACTAGC
TTCTTATTTATAGATAAACACCTTGCATTTTTCTAGACTTTTGTCGGGCCTTCTGTTCTTATGG
GGGCTTGATTCTGAGTGACGACGGGTCTCTCTCTACATTGTGGCCTGTGGAGCAAGTCTGGGTG
TCGGGAACAGCTAAGACACACATCATGATGTGGCTCAGAGCAGTACATGGCAAAGAAGGTGGAC
TTTGCCACGAGATGACCAGCTCTGTGACACAATGGGAGCTGGGGCAGTCAGGTGACTCCCTGAA
CTTCAGGTTGGCCCCACCCTAAAGTGGTTTATGAGTCCATGGCACAACCTAGCGTGCCCCGTAC
ACGGACTCAAGCCTTCGAGCCCGCCTTCTCTCTTGCCTCTTCCTGTATACCAGATCCAGTGCCC
AGGAAGTCTGAGATAGGCTCAGTATCCCTAGCTAGACTGGCCTTAGAAACACAGGGGACAAAGG
CAGACCAGGCAAGCAGCTAGACAGAAACGCCACCCACCCAGGAACAGTATCCCTTGCCTAGTTG
TCAGTTCCCACAGCCTGTAGGAATATCAGACAAAGGGGGTGGAGGGGGTGTTTCCCTGCCTTCT
TATTCTCAGGGCCCAGAGATAGGAGGAGTCAAGGCCATTGGCTTCTCCCTGACCCTTCTGGGCT
GATAAGATAGACTCTATTCCTTCCTGCACCTGCCTGTAAAAAGCCACCCACACCTACTTATCTG
CCTTCTGGGACTGGCAGGCACAGAGGGTGGCCCTCAGCCCACACAGTCAGCAGGGCTGGGAGGG
GCTCTGTACTCCCAAAGACCTTCACTCTTGAGCCCATGGCAGGCTCTGTGCCTGCCCGCTGGCC
TTCAAATATGAGGAATCTTACAGCTTGGCCAGCAGGGGGCTGCCTTCCTCTGCCCTGGAGAGGC
TATGTGGCCATGAACAAGCTAGACAGGTTCCTCTCCCACAAGCCCAGATACAAAGTAGGGCCCT
GGACAGTCAGTTGGCATCACTAAATACCCACACATGCACCAGGAACTTCTGTACCCTGGCCCTG
GGGAAGCTGTGCTAACCAAAGAAATTAAACAAGTTGCCCAAGG

hide sequence

RefSeq Acc Id:

XM_039089389 ⟹ XP_038945317

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	14,822,946 - 14,833,109 (+)	NCBI

RefSeq Acc Id:

XM_039089390 ⟹ XP_038945318

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	14,822,946 - 14,833,109 (+)	NCBI

RefSeq Acc Id:

XM_039089391 ⟹ XP_038945319

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	14,822,962 - 14,833,109 (+)	NCBI

RefSeq Acc Id:

XM_039089392 ⟹ XP_038945320

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	14,824,819 - 14,833,109 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020584	(Get FASTA)	NCBI Sequence Viewer
	XP_006249000	(Get FASTA)	NCBI Sequence Viewer
	XP_006249001	(Get FASTA)	NCBI Sequence Viewer
	XP_038945317	(Get FASTA)	NCBI Sequence Viewer
	XP_038945318	(Get FASTA)	NCBI Sequence Viewer
	XP_038945319	(Get FASTA)	NCBI Sequence Viewer
	XP_038945320	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83910	(Get FASTA)	NCBI Sequence Viewer
	AAH98056	(Get FASTA)	NCBI Sequence Viewer
	EDL89748	(Get FASTA)	NCBI Sequence Viewer
	EDL89749	(Get FASTA)	NCBI Sequence Viewer
	Q4QQS1	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001020584 ⟸ NM_001025413

- UniProtKB:

Q5XHY9 (UniProtKB/Swiss-Prot), Q4QQS1 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MRNASGFLKTAGAPLVSATWLPPSPPPAMPMVAAGPQMERVDNGSQGAPQLFLTSALARGVSGV
FVWTALLLTGHQIYSHLRSYTVPREQRFVIRLLFIVPIYAFDSWLSLLLLGGHPYYVYFDSVRD
CYEAFVIYSFLTLCFQYLGGESAIMAEIRGKPIRSSCFYGTCCLRGMSYSITFLRFCKQATLQF
CIVKPVMALITIILQAFDKYHDGDFNIHSGYLYVTLVYNASVSLALYALFLFYFATRDLLRPFE
PVLKFLTIKAIIFLSFWQGMLLAILERCGVIPEVQAVDGTRVGAGTLAAGYQNFLICIEMLFAS
LALRYAFPSQVYSEKKNSPAPPAPMQSISSGLKETISPQDIVQDAIHNFSPAYQQYTQQSTHEA
PGPGQGGHPSPSTHPGPASGSGGGKKSRNIEKRMLIPSEDL

hide sequence

RefSeq Acc Id:	XP_006249001 ⟸ XM_006248939
- Peptide Label:	isoform X4
- UniProtKB:	Q5XHY9 (UniProtKB/Swiss-Prot), Q4QQS1 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRNASGFLKTAGAPLVSATWLPPSPPPAMPMVAAGPQMERVDNGSQGAPQLFLTSALARGVSGV FVWTALLLTGHQIYSHLRSYTVPREQRFVIRLLFIVPIYAFDSWLSLLLLGGHPYYVYFDSVRD CYEAFVIYSFLTLCFQYLGGESAIMAEIRGKPIRSSCFYGTCCLRGMSYSITFLRFCKQATLQF CIVKPVMALITIILQAFDKYHDGDFNIHSGYLYVTLVYNASVSLALYALFLFYFATRDLLRPFE PVLKFLTIKAIIFLSFWQGMLLAILERCGVIPEVQAVDGTRVGAGTLAAGYQNFLICIEMLFAS LALRYAFPSQVYSEKKNSPAPPAPMQSISSGLKETISPQDIVQDAIHNFSPAYQQYTQQSTHEA PGPGQGGHPSPSTHPGPASGSGGGKKSRNIEKRMLIPSEDL hide sequence

RefSeq Acc Id:	XP_006249000 ⟸ XM_006248938
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K4I7 (UniProtKB/TrEMBL), A0A8L2UH93 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSQASPEEARPPRPGPKSFLLTEMRNASGFLKTAGAPLVSATWLPPSPPPAMPMVAAGPQMER VDNGSQGAPQLFLTSALARGVSGVFVWTALLLTGHQIYSHLRSYTVPREQRFVIRLLFIVPIYA FDSWLSLLLLGGHPYYVYFDSVRDCYEAFVIYSFLTLCFQYLGGESAIMAEIRGKPIRSSCFYG TCCLRGMSYSITFLRFCKQATLQFCIVKPVMALITIILQAFDKYHDGDFNIHSGYLYVTLVYNA SVSLALYALFLFYFATRDLLRPFEPVLKFLTIKAIIFLSFWQGMLLAILERCGVIPEVQAVDGT RVGAGTLAAGYQNFLICIEMLFASLALRYAFPSQVYSEKKNSPAPPAPMQSISSGLKETISPQD IVQDAIHNFSPAYQQYTQQSTHEAPGPGQGGHPSPSTHPGPASGSGGGKKSRNIEKRMLIPSED L hide sequence

RefSeq Acc Id:

ENSRNOP00000073059 ⟸ ENSRNOT00000085936

RefSeq Acc Id:

ENSRNOP00000001718 ⟸ ENSRNOT00000001718

RefSeq Acc Id:	XP_038945317 ⟸ XM_039089389
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038945318 ⟸ XM_039089390
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038945319 ⟸ XM_039089391
- Peptide Label:	isoform X4
- UniProtKB:	Q5XHY9 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038945320 ⟸ XM_039089392
- Peptide Label:	isoform X5

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4QQS1-F1-model_v2	AlphaFold	Q4QQS1	1-425	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698464

Promoter ID:

EPDNEW_R8985

Type:

initiation region

Name:

Tmem184a_1

Description:

transmembrane protein 184A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R8986

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	16,912,302 - 16,912,362	EPDNEW

RGD ID:

13698461

Promoter ID:

EPDNEW_R8986

Type:

multiple initiation site

Name:

Tmem184a_2

Description:

transmembrane protein 184A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R8985

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	16,913,296 - 16,913,356	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306702	AgrOrtholog
BioCyc Gene	G2FUF-19907	BioCyc
Ensembl Genes	ENSRNOG00000001275	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000001718	ENTREZGENE
	ENSRNOP00000001718.5	UniProtKB/TrEMBL
	ENSRNOP00000073059.2	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001718	ENTREZGENE
	ENSRNOT00000001718.6	UniProtKB/TrEMBL
	ENSRNOT00000085936.2	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7134222	IMAGE-MGC_LOAD
	IMAGE:7457725	IMAGE-MGC_LOAD
InterPro	Ostalpha/TMEM184C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:304325	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:116214	IMAGE-MGC_LOAD
	MGC:95279	IMAGE-MGC_LOAD
NCBI Gene	304325	ENTREZGENE
PANTHER	PTHR23423	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 184A	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Solute_trans_a	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Tmem184a	PhenoGen
UniProt	A0A0G2K4I7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UH93	ENTREZGENE, UniProtKB/TrEMBL
	Q4QQS1	ENTREZGENE
	Q5XHY9	ENTREZGENE
	T184A_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	Q5XHY9	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Tmem184a	transmembrane protein 184A	RGD1306702	similar to hypothetical protein MGC9712	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1306702	similar to hypothetical protein MGC9712	RGD1306702_predicted	similar to hypothetical protein MGC9712 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1306702_predicted	similar to hypothetical protein MGC9712 (predicted)	LOC304325_predicted	similar to hypothetical protein MGC9712 (predicted)	Symbol and Name status set to approved	1331353	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar