Pltp (phospholipid transfer protein) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Pltp (phospholipid transfer protein) Rattus norvegicus
Analyze
Symbol: Pltp
Name: phospholipid transfer protein
RGD ID: 1306695
Description: Predicted to enable several functions, including lipid transfer activity; lipoprotein particle binding activity; and phospholipid binding activity. Predicted to be involved in several processes, including high-density lipoprotein particle remodeling; positive regulation of cholesterol efflux; and positive regulation of high-density lipoprotein particle assembly. Predicted to act upstream of or within flagellated sperm motility and vitamin E biosynthetic process. Predicted to be located in extracellular region and nucleus. Predicted to be part of high-density lipoprotein particle. Predicted to be active in extracellular space. Orthologous to human PLTP (phospholipid transfer protein); PARTICIPATES IN reverse cholesterol transport pathway; eicosanoid signaling pathway via peroxisome proliferator-activated receptor gamma; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BPI fold containing family E; Bpife; LOC296371
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83173,994,162 - 174,011,982 (-)NCBIGRCr8
mRatBN7.23153,574,825 - 153,592,647 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3153,574,825 - 153,592,647 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3157,383,266 - 157,401,093 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03165,882,236 - 165,900,067 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03163,626,011 - 163,643,842 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03161,304,469 - 161,322,289 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3161,304,469 - 161,322,289 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03167,489,818 - 167,507,696 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43155,871,842 - 155,889,959 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13155,777,877 - 155,796,306 (-)NCBI
Celera3152,186,695 - 152,199,110 (-)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R,R,R)-alpha-tocopherol  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (EXP,ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bezafibrate  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butan-1-ol  (ISO)
butanal  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (EXP)
calcitriol  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clofibrate  (ISO)
clofibric acid  (EXP)
Cuprizon  (EXP)
cytarabine  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
dimethylarsinic acid  (EXP)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenofibrate  (ISO)
fenthion  (ISO)
flutamide  (EXP)
fumonisin B1  (ISO)
gentamycin  (EXP)
GW 3965  (ISO)
GW 501516  (ISO)
high-density lipoprotein cholesterol  (ISO)
indometacin  (ISO)
inulin  (ISO)
isotretinoin  (ISO)
Lasiocarpine  (EXP)
lipopolysaccharide  (ISO)
metformin  (EXP)
methidathion  (ISO)
methotrexate  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
nickel sulfate  (ISO)
nimesulide  (EXP)
obeticholic acid  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP,ISO)
perfluorobutyric acid  (ISO)
perfluoroheptanoic acid  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
perfluoropentanoic acid  (ISO)
phenobarbital  (ISO)
phenytoin  (ISO)
phosgene  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
rotenone  (EXP)
sarin  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
thalidomide  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP,ISO)
triphenyl phosphate  (EXP,ISO)
troglitazone  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Elevation of plasma phospholipid transfer protein increases the risk of atherosclerosis despite lower apolipoprotein B-containing lipoproteins. Lie J, etal., J Lipid Res. 2004 May;45(5):805-11. Epub 2004 Mar 1.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Cell-associated and extracellular phospholipid transfer protein in human coronary atherosclerosis. O'Brien KD, etal., Circulation. 2003 Jul 22;108(3):270-4. Epub 2003 Jun 30.
6. Reverse cholesterol transport and cholesterol efflux in atherosclerosis. Ohashi R, etal., QJM. 2005 Dec;98(12):845-56. Epub 2005 Oct 28.
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. Serum phospholipid transfer protein mass as a possible protective factor for coronary heart diseases. Yatsuya H, etal., Circ J. 2004 Jan;68(1):11-6.
Additional References at PubMed
PMID:7654777   PMID:9132017   PMID:11013307   PMID:16467369   PMID:16502470   PMID:19321130   PMID:21515415   PMID:24006456   PMID:24369175   PMID:27596005   PMID:29883800  


Genomics

Comparative Map Data
Pltp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83173,994,162 - 174,011,982 (-)NCBIGRCr8
mRatBN7.23153,574,825 - 153,592,647 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3153,574,825 - 153,592,647 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3157,383,266 - 157,401,093 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03165,882,236 - 165,900,067 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03163,626,011 - 163,643,842 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03161,304,469 - 161,322,289 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3161,304,469 - 161,322,289 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03167,489,818 - 167,507,696 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43155,871,842 - 155,889,959 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13155,777,877 - 155,796,306 (-)NCBI
Celera3152,186,695 - 152,199,110 (-)NCBICelera
Cytogenetic Map3q42NCBI
PLTP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382045,898,620 - 45,912,155 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2045,898,621 - 45,912,155 (-)EnsemblGRCh38hg38GRCh38
GRCh372044,527,259 - 44,540,794 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362043,960,804 - 43,974,193 (-)NCBINCBI36Build 36hg18NCBI36
Build 342043,960,803 - 43,974,193NCBI
Celera2041,238,859 - 41,252,245 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2041,269,236 - 41,282,979 (-)NCBIHuRef
CHM1_12044,430,379 - 44,443,688 (-)NCBICHM1_1
T2T-CHM13v2.02047,635,115 - 47,648,212 (-)NCBIT2T-CHM13v2.0
Pltp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392164,681,441 - 164,699,564 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2164,681,438 - 164,699,631 (-)EnsemblGRCm39 Ensembl
GRCm382164,839,518 - 164,857,708 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2164,839,518 - 164,857,711 (-)EnsemblGRCm38mm10GRCm38
MGSCv372164,665,018 - 164,683,208 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362164,530,723 - 164,548,913 (-)NCBIMGSCv36mm8
Celera2170,777,180 - 170,795,346 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map285.27NCBI
Pltp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544511,384,723 - 11,399,217 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544511,384,723 - 11,399,217 (+)NCBIChiLan1.0ChiLan1.0
PLTP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22151,640,109 - 51,653,712 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12051,633,217 - 51,646,759 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02042,237,434 - 42,251,189 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12043,324,608 - 43,337,999 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2043,324,609 - 43,337,999 (-)Ensemblpanpan1.1panPan2
PLTP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12433,189,098 - 33,199,935 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2433,189,099 - 33,199,854 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2432,716,116 - 32,727,034 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02433,899,412 - 33,910,331 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2433,899,419 - 33,910,247 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12433,157,883 - 33,168,800 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02433,273,014 - 33,283,934 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02433,812,190 - 33,823,120 (-)NCBIUU_Cfam_GSD_1.0
Pltp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640191,667,291 - 191,677,832 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365147,121,023 - 7,131,475 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLTP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1748,089,785 - 48,101,515 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11748,089,789 - 48,101,604 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21753,829,332 - 53,847,099 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLTP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1217,972,054 - 17,986,100 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl217,972,215 - 17,988,701 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605066,611,503 - 66,625,773 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pltp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247908,673,089 - 8,685,942 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247908,673,212 - 8,686,094 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pltp
76 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:57
Count of miRNA genes:50
Interacting mature miRNAs:55
Transcripts:ENSRNOT00000022594
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145925360166177555Rat
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3145925360166177555Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1300113Bp176Blood pressure QTL 1763.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145956084157309487Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3145925360166177555Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3145925360166177555Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3145925360166177555Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3145925360166177555Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141339236155617360Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141339013162184794Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3145956084161299569Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3145925360166177555Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat

Markers in Region
AA891893  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23153,574,324 - 153,574,723 (+)MAPPERmRatBN7.2
Rnor_6.03161,303,969 - 161,304,367NCBIRnor6.0
Rnor_5.03167,489,318 - 167,489,716UniSTSRnor5.0
RGSC_v3.43155,871,342 - 155,871,740UniSTSRGSC3.4
Celera3152,181,930 - 152,182,328UniSTS
RH 3.4 Map31424.1UniSTS
Cytogenetic Map3q42UniSTS
AU048972  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23153,586,208 - 153,586,379 (+)MAPPERmRatBN7.2
Rnor_6.03161,315,851 - 161,316,021NCBIRnor6.0
Rnor_5.03167,500,947 - 167,501,117UniSTSRnor5.0
RGSC_v3.43155,883,521 - 155,883,691UniSTSRGSC3.4
Celera3152,192,680 - 152,192,842UniSTS
Cytogenetic Map3q42UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 25 44 33 19 33 5 8 74 35 37 11 5
Low 18 13 8 8 3 3 4 3
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000022594   ⟹   ENSRNOP00000022594
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3153,574,825 - 153,592,647 (-)Ensembl
Rnor_6.0 Ensembl3161,304,469 - 161,322,289 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095240   ⟹   ENSRNOP00000091839
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3153,574,825 - 153,592,647 (-)Ensembl
RefSeq Acc Id: NM_001168543   ⟹   NP_001162015
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83173,994,162 - 174,011,982 (-)NCBI
mRatBN7.23153,574,825 - 153,592,647 (-)NCBI
Rnor_6.03161,304,469 - 161,322,289 (-)NCBI
Rnor_5.03167,489,818 - 167,507,696 (-)NCBI
RGSC_v3.43155,871,842 - 155,889,959 (-)RGD
Celera3152,186,695 - 152,199,110 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001162015 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAN61966 (Get FASTA)   NCBI Sequence Viewer  
  EDL96485 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000022594
  ENSRNOP00000022594.4
  ENSRNOP00000091839.1
RefSeq Acc Id: NP_001162015   ⟸   NM_001168543
- Peptide Label: precursor
- UniProtKB: E9PSP1 (UniProtKB/TrEMBL),   A0A8I6AGE7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000022594   ⟸   ENSRNOT00000022594
RefSeq Acc Id: ENSRNOP00000091839   ⟸   ENSRNOT00000095240
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PSP1-F1-model_v2 AlphaFold E9PSP1 1-496 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692670
Promoter ID:EPDNEW_R3194
Type:multiple initiation site
Name:Pltp_1
Description:phospholipid transfer protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03161,322,104 - 161,322,164EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306695 AgrOrtholog
BioCyc Gene G2FUF-46821 BioCyc
Ensembl Genes ENSRNOG00000016488 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022594 ENTREZGENE
  ENSRNOT00000022594.7 UniProtKB/TrEMBL
  ENSRNOT00000095240.1 UniProtKB/TrEMBL
InterPro Bactericidal_perm-incr_a/b_dom UniProtKB/TrEMBL
  BPI/LBP UniProtKB/TrEMBL
  BPI/LBP/Plunc UniProtKB/TrEMBL
  Lipid-bd_serum_glycop_C UniProtKB/TrEMBL
  Lipid-bd_serum_glycop_CS UniProtKB/TrEMBL
  Lipid-bd_serum_glycop_N UniProtKB/TrEMBL
KEGG Report rno:296371 UniProtKB/TrEMBL
NCBI Gene 296371 ENTREZGENE
PANTHER PTHR10504 UniProtKB/TrEMBL
  PTHR10504:SF16 UniProtKB/TrEMBL
Pfam LBP_BPI_CETP UniProtKB/TrEMBL
  LBP_BPI_CETP_C UniProtKB/TrEMBL
PhenoGen Pltp PhenoGen
PIRSF Lipid_binding_protein UniProtKB/TrEMBL
PROSITE LBP_BPI_CETP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016488 RatGTEx
SMART BPI1 UniProtKB/TrEMBL
  BPI2 UniProtKB/TrEMBL
Superfamily-SCOP Bactericidal_perm-incr_a/b_dom UniProtKB/TrEMBL
UniProt A0A8I6AGE7 ENTREZGENE, UniProtKB/TrEMBL
  E9PSP1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Pltp  phospholipid transfer protein   Pltp_predicted  phospholipid transfer protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Pltp_predicted  phospholipid transfer protein (predicted)      Symbol and Name status set to approved 70820 APPROVED