Tspyl4 (TSPY-like 4) - Rat Genome Database

Name: Tspyl4
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Tspyl4 (TSPY-like 4) Rattus norvegicus

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Symbol:

Tspyl4

Name:

TSPY-like 4

RGD ID:

1306653

Description:

Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in nucleosome assembly. Predicted to be located in chromatin. Predicted to be active in nucleus. Orthologous to human TSPYL4 (TSPY like 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 3,3',4,4',5-pentachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC309828; testis-specific Y-encoded-like protein 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TSPYL4 (TSPY like 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tspyl4 (TSPY-like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tspyl4 (TSPY like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TSPYL4 (TSPY like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TSPYL4 (TSPY like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tspyl4 (TSPY like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TSPYL4 (TSPY like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TSPYL4 (TSPY like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tspyl4 (TSPY like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TSPY2 (testis specific protein Y-linked 2)	HGNC	Treefam
Homo sapiens (human):	TSPY1 (testis specific protein Y-linked 1)	HGNC	Treefam
Homo sapiens (human):	TSPY3 (testis specific protein Y-linked 3)	HGNC	Treefam
Homo sapiens (human):	TSPY4 (testis specific protein Y-linked 4)	HGNC	Treefam
Homo sapiens (human):	TSPY10 (testis specific protein Y-linked 10)	HGNC	Treefam
Homo sapiens (human):	ZKSCAN3 (zinc finger with KRAB and SCAN domains 3)	HGNC	OMA
Homo sapiens (human):	ZKSCAN4 (zinc finger with KRAB and SCAN domains 4)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	TSPYL4 (TSPY like 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tspyl4 (TSPY-like 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tspy (testis specific protein Y-linked)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	VPS75	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	tspyl2	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	39,653,788 - 39,655,784 (+)	NCBI		GRCr8
mRatBN7.2	20	38,098,756 - 38,100,752 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	38,098,677 - 38,103,053 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	39,815,805 - 39,817,799 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	39,474,922 - 39,476,916 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	40,194,746 - 40,196,742 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	41,100,071 - 41,102,067 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	41,100,071 - 41,102,056 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	42,829,886 - 42,831,882 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	38,639,281 - 38,641,277 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	38,662,291 - 38,664,277 (+)	NCBI
Celera	20	38,881,158 - 38,883,154 (+)	NCBI		Celera
Cytogenetic Map	20	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

body dysmorphic disorder (ISO)

congenital disorder of glycosylation Iaa (ISO)

melanoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (ISO)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

cadmium atom (ISO)

carbon nanotube (ISO)

choline (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

dibenz[a,h]anthracene (ISO)

Dibutyl phosphate (ISO)

dioxygen (ISO)

endosulfan (EXP)

fenvalerate (EXP)

folic acid (ISO)

furan (EXP)

genistein (EXP)

gentamycin (EXP)

hexane (EXP)

isoprenaline (ISO)

L-methionine (ISO)

leflunomide (EXP,ISO)

N-nitrosodiethylamine (ISO)

nickel dichloride (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

quercetin (ISO)

rotenone (ISO)

sodium arsenite (ISO)

tamibarotene (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

tris(2-butoxyethyl) phosphate (ISO)

urethane (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

nucleosome assembly (IEA)

Cellular Component

chromatin (IBA)

nucleus (IBA)

Molecular Function

chromatin binding (IBA)

histone binding (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:25931508

Genomics

Comparative Map Data

Tspyl4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	39,653,788 - 39,655,784 (+)	NCBI		GRCr8
mRatBN7.2	20	38,098,756 - 38,100,752 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	38,098,677 - 38,103,053 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	39,815,805 - 39,817,799 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	39,474,922 - 39,476,916 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	40,194,746 - 40,196,742 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	41,100,071 - 41,102,067 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	41,100,071 - 41,102,056 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	42,829,886 - 42,831,882 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	38,639,281 - 38,641,277 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	38,662,291 - 38,664,277 (+)	NCBI
Celera	20	38,881,158 - 38,883,154 (+)	NCBI		Celera
Cytogenetic Map	20	q12	NCBI

TSPYL4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	116,249,964 - 116,254,075 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	116,249,964 - 116,254,075 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	116,571,127 - 116,575,238 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	116,677,820 - 116,681,954 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	116,677,825 - 116,681,954	NCBI
Celera	6	117,314,164 - 117,318,298 (-)	NCBI		Celera
Cytogenetic Map	6	q22.1	NCBI
HuRef	6	114,151,320 - 114,155,454 (-)	NCBI		HuRef
CHM1_1	6	116,835,020 - 116,839,154 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	117,433,945 - 117,438,056 (-)	NCBI		T2T-CHM13v2.0

Tspyl4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	34,173,417 - 34,177,316 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	34,173,438 - 34,177,316 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	34,297,421 - 34,301,320 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	34,297,442 - 34,301,320 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	34,017,227 - 34,021,126 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	33,986,889 - 33,990,736 (+)	NCBI		MGSCv36	mm8
Celera	10	35,207,077 - 35,210,976 (+)	NCBI		Celera
Cytogenetic Map	10	B1	NCBI
cM Map	10	18.85	NCBI

Tspyl4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955526	562,891 - 567,892 (+)	NCBI	ChiLan1.0	ChiLan1.0

TSPYL4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	136,258,142 - 136,264,280 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	134,151,076 - 134,155,341 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	114,052,540 - 114,056,709 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	118,198,289 - 118,202,467 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	118,201,097 - 118,202,341 (-)	Ensembl	panpan1.1		panPan2

TSPYL4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	71,916,682 - 71,918,481 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	71,674,517 - 71,679,107 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	72,799,045 - 72,800,267 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	12	72,147,879 - 72,152,469 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	71,992,758 - 71,993,977 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	72,381,575 - 72,382,797 (-)	NCBI		UU_Cfam_GSD_1.0

Tspyl4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	107,117,714 - 107,121,668 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936824	845,325 - 846,560 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936824	842,698 - 846,653 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TSPYL4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	81,887,571 - 81,892,916 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	81,888,946 - 81,893,643 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	92,004,582 - 92,008,615 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TSPYL4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	57,559,548 - 57,563,582 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	57,559,649 - 57,560,893 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	29,882,920 - 29,886,976 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tspyl4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624856	2,238,115 - 2,246,432 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tspyl4
7 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	478
Count of miRNA genes:	218
Interacting mature miRNAs:	251
Transcripts:	ENSRNOT00000000658
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	17617832	47606836	Rat
2303587	Bw93	Body weight QTL 93	13		body mass (VT:0001259)	body weight (CMO:0000012)	20	25106722	54435887	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1530655	46530655	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1527842	46527842	Rat
2303626	Vencon10	Ventilatory control QTL 10		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	20	19190721	54435887	Rat
1598869	Memor6	Memory QTL 6	3.1		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	20	29244388	54435887	Rat
70158	Bp60	Blood pressure QTL 60	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	31614284	44396023	Rat
7411652	Foco24	Food consumption QTL 24		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	11757515	54435887	Rat
1331747	Hrtrt16	Heart rate QTL 16	3.163		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	20	25209734	54435887	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	2606836	47606836	Rat
2303578	Gluco50	Glucose level QTL 50	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	20	25106722	54435887	Rat
2317880	Alcrsp25	Alcohol response QTL 25	2.3		response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	17697550	54435887	Rat
9590092	Insglur9	Insulin/glucose ratio QTL 9	18.38	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	20	11757515	54435887	Rat
2300188	Bmd68	Bone mineral density QTL 68	6.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	20	25106722	54435887	Rat

Markers in Region

RH135418

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	38,100,512 - 38,100,700 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	41,101,828 - 41,102,015	NCBI	Rnor6.0
Rnor_5.0	20	42,831,643 - 42,831,830	UniSTS	Rnor5.0
RGSC_v3.4	20	38,641,038 - 38,641,225	UniSTS	RGSC3.4
Celera	20	38,882,915 - 38,883,102	UniSTS
RH 3.4 Map	20	402.92	UniSTS
Cytogenetic Map	20	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC134180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC082023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000000658 ⟹ ENSRNOP00000000658

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	38,098,677 - 38,103,053 (+)	Ensembl
Rnor_6.0 Ensembl	20	41,100,071 - 41,102,056 (+)	Ensembl

RefSeq Acc Id:

NM_001012075 ⟹ NP_001012075

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	39,653,788 - 39,655,784 (+)	NCBI
mRatBN7.2	20	38,098,756 - 38,100,752 (+)	NCBI
Rnor_6.0	20	41,100,071 - 41,102,067 (+)	NCBI
Rnor_5.0	20	42,829,886 - 42,831,882 (+)	NCBI
RGSC_v3.4	20	38,639,281 - 38,641,277 (+)	RGD
Celera	20	38,881,158 - 38,883,154 (+)	RGD

Sequence:

show sequence

TGCCCTGCGTCTGCAGAGAACAAGGAAAGCTTCTCTGCAGGGCTGTCAGCTGCCAAAATGAACG
GCGTGGAAGGGAACAACGAGCTCCCTCTCGCTAACACCTCGACCTCCGCCCTTGTCCCGGAAGA
TCTGGATCTGAAGCAAGACCAGCCGCTCAGCGAGGAAACTGACACGGTGCGGGAGATGGAGGCT
GCAGGTGAGGCCGGTGCGGAGGGAGGCGCGTCCCCCGATTCGGAGCACTGCGACCCCCAGCTCT
GCCTCCGAGTGGCTGAGAATGGCTGTGCTGCCGCAGCGGGAGAGGGGCTGGAGGATGGTCTGTC
TTCATCAAAGTGTGGGGACGCACCCTTGGCGTCTGTGGCAGCCAACGACAGCAATAAAAATGGC
TGTCAGCTTGCAGGGCCGCTCAGCCCTGCTAAGCCAAAAACTCTGGAAGCCAGTGGTGCAGTGG
GCCTGGGGTCGCAGATGATGCCAGGGCCGAAGAAGACCAAGGTAATGACTACCAAGGGCGCCAT
CTCTGCGACTACAGGCAAGGAAGGAGAAGCAGGGGCGGCAATGCAGGAAAAGAAGGGGGTGCAG
AAAGAAAAAAAGGCAGCTGGAGGAGGGAAAGACGAGACTCGTCCTAGAGCCCCTAAGATCAATA
ACTGCATGGACTCCCTGGAAGCCATCGATCAAGAGCTGTCAAATGTAAATGCGCAAGCTGACAG
GGCCTTCCTCCAGCTGGAACGCAAATTTGGGCGGATGAGAAGGCTCCACATGCAGCGCCGAAGT
TTCATCATCCAAAACATCCCAGGTTTCTGGGTCACAGCGTTTCGGAACCACCCGCAACTGTCAC
CGATGATCAGTGGCCAAGATGAAGACATGATGAGGTACATGATCAATTTAGAGGTGGAGGAGCT
TAAGCACCCAAGAGCAGGGTGCAAATTTAAGTTCATCTTCCAAAGCAACCCCTACTTCCGAAAT
GAGGGGCTGGTCAAAGAGTACGAGCGCAGATCCTCAGGTCGAGTGGTGTCGCTCTCTACGCCAA
TCCGCTGGCACCGGGGTCAAGAACCCCAGGCCCATATCCACAGGAATAGAGAGGGGAACACGAT
TCCCAGTTTCTTCAATTGGTTCTCAGACCACAGCCTCCTAGAATTCGACAGAATAGCTGAAATT
ATCAAAGGGGAGCTTTGGTCCAATCCCCTACAATACTACCTGATGGGCGATGGGCCACGCAGAG
GAGTTCGAGTCCCACCAAGGCAGCCAGTGGAGAGTCCCAGGTCCTTCAGGTTCCAGTCTGGCTA
AGCTCTGCCCTCGTGAGAAGCTCTTACAGAAGAGTCCTTACCACCTTCTCAGCTTGGCTAGCAG
CATGCAGCCTTCTGTCTGCTTTCTCTTCCTTGGATTGTGTCCTTTGGTTCTTCTAAGTCTCCGG
TAGTTTCAAGGTTGTGGCTTCCAAGTCTTTGCTCTTCTTTCTCTTGGCCATCACGATGTCCTGC
ATAGTGTTAATGGTGTTCCAAGTGCATGGCCTCCAAACTGCTTCTATGCCAAGCTCACGTGCTG
TAGTTTGTACTGCTTTTCTTTGCATGGCTTGGTTCCTGTCTGTGATCTTCTAGGTTTTTTGTTT
TCTTTTTTAAAAGTGGTTCTCTATCAAAAGAAAGCTTGACATATCCTTACCAAGAACTAGCCAG
ATTTCATACTGTGTTCCCGATATCTATGTACTGTGAAGAACTGTGAGTTTCGCCACTGCAAGAT
GGGACTGTATCCCAATCCAGCCATCAGCCCAACAGGACATTCCAAGCTGTCACCAACTGATCCT
AGCTGTCTTCCTGGGCCTTTGCCATTTACCCTGCTTTTTATCTATAGAATGAGCAGGTGGCTGG
TAGGTGACTACTAGGTAAGAGTGAAGTATTAGGTGAGGAGTGTTTTCTGTCACCACATTGTTCT
TGTACCAATGCATCATGATCAGCTTGGATCAGCTACTGACTGTCTGATATTTCTAACCCCCAAC
ACAAAAAAAAAAAAAAAAAAAAAAAA

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Protein Sequences


Protein RefSeqs	NP_001012075	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH82023	(Get FASTA)	NCBI Sequence Viewer
	EDL87783	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000000658.3

RefSeq Acc Id:

NP_001012075 ⟸ NM_001012075

- UniProtKB:

Q66H46 (UniProtKB/TrEMBL), F7EPM0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNGVEGNNELPLANTSTSALVPEDLDLKQDQPLSEETDTVREMEAAGEAGAEGGASPDSEHCDP
QLCLRVAENGCAAAAGEGLEDGLSSSKCGDAPLASVAANDSNKNGCQLAGPLSPAKPKTLEASG
AVGLGSQMMPGPKKTKVMTTKGAISATTGKEGEAGAAMQEKKGVQKEKKAAGGGKDETRPRAPK
INNCMDSLEAIDQELSNVNAQADRAFLQLERKFGRMRRLHMQRRSFIIQNIPGFWVTAFRNHPQ
LSPMISGQDEDMMRYMINLEVEELKHPRAGCKFKFIFQSNPYFRNEGLVKEYERRSSGRVVSLS
TPIRWHRGQEPQAHIHRNREGNTIPSFFNWFSDHSLLEFDRIAEIIKGELWSNPLQYYLMGDGP
RRGVRVPPRQPVESPRSFRFQSG

hide sequence

Ensembl Acc Id:

ENSRNOP00000000658 ⟸ ENSRNOT00000000658

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q66H46-F1-model_v2	AlphaFold	Q66H46	1-407	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701641

Promoter ID:

EPDNEW_R12164

Type:

multiple initiation site

Name:

Tspyl4_1

Description:

TSPY-like 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	41,100,057 - 41,100,117	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306653	AgrOrtholog
BioCyc Gene	G2FUF-3552	BioCyc
Ensembl Genes	ENSRNOG00000000547	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000000658.6	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.1500	UniProtKB/TrEMBL
	Nucleosome assembly protein	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7129838	IMAGE-MGC_LOAD
InterPro	NAP-like_sf	UniProtKB/TrEMBL
	NAP_family	UniProtKB/TrEMBL
KEGG Report	rno:309828	UniProtKB/TrEMBL
MGC_CLONE	MGC:95153	IMAGE-MGC_LOAD
NCBI Gene	309828	ENTREZGENE
PANTHER	NAP_family	UniProtKB/TrEMBL
	TESTIS-SPECIFIC Y-ENCODED-LIKE PROTEIN 4	UniProtKB/TrEMBL
Pfam	NAP	UniProtKB/TrEMBL
PhenoGen	Tspyl4	PhenoGen
RatGTEx	ENSRNOG00000000547	RatGTEx
Superfamily-SCOP	SSF143113	UniProtKB/TrEMBL
UniProt	F7EPM0	ENTREZGENE, UniProtKB/TrEMBL
	Q66H46	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Tspyl4	TSPY-like 4	Tspyl4_predicted	TSPY-like 4 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Tspyl4_predicted	TSPY-like 4 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD