Deup1 (deuterosome assembly protein 1) - Rat Genome Database

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Gene: Deup1 (deuterosome assembly protein 1) Rattus norvegicus
Analyze
Symbol: Deup1
Name: deuterosome assembly protein 1
RGD ID: 1306632
Description: Predicted to enable identical protein binding activity. Predicted to be involved in centriole replication and de novo centriole assembly involved in multi-ciliated epithelial cell differentiation. Predicted to be located in cytoplasm. Predicted to be active in centriole and deuterosome. Orthologous to human DEUP1 (deuterosome assembly protein 1); INTERACTS WITH 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ccdc67; coiled-coil domain containing 67; coiled-coil domain-containing protein 67; deuterosome protein 1; LOC315438; RGD1306632
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8820,661,687 - 20,724,083 (-)NCBIGRCr8
mRatBN7.2812,380,300 - 12,442,649 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl812,380,302 - 12,442,199 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx816,367,102 - 16,428,992 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0814,664,853 - 14,726,743 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0812,642,540 - 12,705,083 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0814,094,742 - 14,157,232 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl814,094,732 - 14,157,141 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0814,190,845 - 14,252,920 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4812,362,691 - 12,427,025 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1812,362,690 - 12,427,025 (-)NCBI
Celera813,846,927 - 13,908,568 (-)NCBICelera
Cytogenetic Map8q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centriole  (IBA)
cytoplasm  (IEA)
deuterosome  (IBA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:24240477   PMID:25416956  


Genomics

Comparative Map Data
Deup1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8820,661,687 - 20,724,083 (-)NCBIGRCr8
mRatBN7.2812,380,300 - 12,442,649 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl812,380,302 - 12,442,199 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx816,367,102 - 16,428,992 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0814,664,853 - 14,726,743 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0812,642,540 - 12,705,083 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0814,094,742 - 14,157,232 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl814,094,732 - 14,157,141 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0814,190,845 - 14,252,920 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4812,362,691 - 12,427,025 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1812,362,690 - 12,427,025 (-)NCBI
Celera813,846,927 - 13,908,568 (-)NCBICelera
Cytogenetic Map8q12NCBI
DEUP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381193,329,998 - 93,438,470 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1193,329,971 - 93,438,487 (+)EnsemblGRCh38hg38GRCh38
GRCh371193,063,908 - 93,171,636 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361192,703,531 - 92,811,284 (+)NCBINCBI36Build 36hg18NCBI36
Celera1190,361,768 - 90,463,143 (+)NCBICelera
Cytogenetic Map11q21NCBI
HuRef1189,147,552 - 89,249,198 (+)NCBIHuRef
CHM1_11192,945,828 - 93,054,637 (+)NCBICHM1_1
T2T-CHM13v2.01193,252,777 - 93,354,907 (+)NCBIT2T-CHM13v2.0
Deup1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39915,471,160 - 15,539,646 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl915,471,160 - 15,539,229 (-)EnsemblGRCm39 Ensembl
GRCm38915,559,864 - 15,628,351 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl915,559,864 - 15,627,933 (-)EnsemblGRCm38mm10GRCm38
MGSCv37915,364,308 - 15,432,377 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36915,311,602 - 15,362,549 (-)NCBIMGSCv36mm8
Celera912,838,954 - 12,907,272 (-)NCBICelera
Cytogenetic Map9A2NCBI
cM Map95.0NCBI
Deup1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554141,062,968 - 1,126,698 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554141,062,968 - 1,126,698 (-)NCBIChiLan1.0ChiLan1.0
DEUP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2994,195,114 - 94,297,462 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11195,289,041 - 95,391,287 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01188,357,292 - 88,459,239 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11191,846,096 - 91,946,993 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1191,846,096 - 91,946,993 (+)Ensemblpanpan1.1panPan2
DEUP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1217,209,524 - 7,334,200 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl217,209,531 - 7,334,606 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha217,267,312 - 7,348,862 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0217,430,344 - 7,512,898 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl217,389,524 - 7,512,800 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1217,216,490 - 7,299,045 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0217,280,771 - 7,363,763 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0217,330,045 - 7,412,604 (-)NCBIUU_Cfam_GSD_1.0
Deup1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494778,493,574 - 78,574,693 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366741,334,605 - 1,401,943 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366741,334,605 - 1,401,943 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DEUP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl925,689,034 - 25,893,096 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1925,688,394 - 25,893,105 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2929,427,469 - 29,494,382 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DEUP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1184,579,296 - 84,678,064 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl184,580,213 - 84,678,661 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604341,116,208 - 41,214,634 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Deup1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473538,006,731 - 38,110,850 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473538,006,766 - 38,110,579 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Deup1
358 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat

Markers in Region
RH134314  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2812,380,412 - 12,380,616 (+)MAPPERmRatBN7.2
Rnor_6.0814,094,856 - 14,095,059NCBIRnor6.0
Rnor_5.0814,190,959 - 14,191,162UniSTSRnor5.0
Rnor_5.0814,174,007 - 14,174,210UniSTSRnor5.0
RGSC_v3.4812,362,804 - 12,363,007UniSTSRGSC3.4
Celera813,847,040 - 13,847,243UniSTS
RH 3.4 Map8115.7UniSTS
Cytogenetic Map8q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 42 113 70 69 38 25 38 6 188 88 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001014087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC105648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000079034   ⟹   ENSRNOP00000069511
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl812,380,302 - 12,426,952 (-)Ensembl
Rnor_6.0 Ensembl814,094,732 - 14,157,141 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089364   ⟹   ENSRNOP00000072022
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl812,380,302 - 12,442,199 (-)Ensembl
Rnor_6.0 Ensembl814,094,745 - 14,156,656 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110026   ⟹   ENSRNOP00000090446
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl812,380,302 - 12,442,199 (-)Ensembl
RefSeq Acc Id: NM_001014087   ⟹   NP_001014109
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,661,687 - 20,723,585 (-)NCBI
mRatBN7.2812,380,300 - 12,442,199 (-)NCBI
Rnor_6.0814,094,743 - 14,156,656 (-)NCBI
Rnor_5.0814,190,845 - 14,252,920 (-)NCBI
RGSC_v3.4812,362,691 - 12,427,025 (-)RGD
Celera813,846,927 - 13,908,568 (-)RGD
Sequence:
RefSeq Acc Id: XM_008765933   ⟹   XP_008764155
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,661,687 - 20,724,083 (-)NCBI
mRatBN7.2812,380,300 - 12,442,649 (-)NCBI
Rnor_6.0814,094,742 - 14,157,232 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765935   ⟹   XP_008764157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,661,687 - 20,718,972 (-)NCBI
mRatBN7.2812,380,300 - 12,433,724 (-)NCBI
Rnor_6.0814,094,742 - 14,149,228 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039081353   ⟹   XP_038937281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,661,687 - 20,723,728 (-)NCBI
mRatBN7.2812,380,300 - 12,442,271 (-)NCBI
RefSeq Acc Id: XM_039081354   ⟹   XP_038937282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,661,687 - 20,723,728 (-)NCBI
mRatBN7.2812,380,300 - 12,442,271 (-)NCBI
RefSeq Acc Id: XM_039081355   ⟹   XP_038937283
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,665,860 - 20,723,728 (-)NCBI
mRatBN7.2812,380,996 - 12,442,271 (-)NCBI
RefSeq Acc Id: XM_039081356   ⟹   XP_038937284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,665,866 - 20,723,728 (-)NCBI
mRatBN7.2812,384,479 - 12,442,271 (-)NCBI
RefSeq Acc Id: XM_039081358   ⟹   XP_038937286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,680,641 - 20,723,728 (-)NCBI
mRatBN7.2812,399,226 - 12,442,271 (-)NCBI
RefSeq Acc Id: XM_039081359   ⟹   XP_038937287
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,673,831 - 20,723,728 (-)NCBI
mRatBN7.2812,392,443 - 12,442,271 (-)NCBI
RefSeq Acc Id: XM_039081360   ⟹   XP_038937288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,681,930 - 20,723,728 (-)NCBI
mRatBN7.2812,400,601 - 12,442,271 (-)NCBI
RefSeq Acc Id: XM_063265330   ⟹   XP_063121400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,661,687 - 20,724,071 (-)NCBI
RefSeq Acc Id: XM_063265331   ⟹   XP_063121401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,661,687 - 20,724,083 (-)NCBI
RefSeq Acc Id: XM_063265332   ⟹   XP_063121402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,665,860 - 20,723,728 (-)NCBI
RefSeq Acc Id: XM_063265333   ⟹   XP_063121403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,680,641 - 20,724,071 (-)NCBI
RefSeq Acc Id: XM_063265335   ⟹   XP_063121405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,680,641 - 20,724,071 (-)NCBI
RefSeq Acc Id: NP_001014109   ⟸   NM_001014087
- UniProtKB: Q5U3Z6 (UniProtKB/Swiss-Prot),   A0A8L2R0S4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764155   ⟸   XM_008765933
- Peptide Label: isoform X1
- UniProtKB: A0A8L2R4Y5 (UniProtKB/TrEMBL),   A0A8L2R0S4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764157   ⟸   XM_008765935
- Peptide Label: isoform X2
- UniProtKB: A0A8L2R0S4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069511   ⟸   ENSRNOT00000079034
Ensembl Acc Id: ENSRNOP00000072022   ⟸   ENSRNOT00000089364
RefSeq Acc Id: XP_038937282   ⟸   XM_039081354
- Peptide Label: isoform X4
- UniProtKB: A0A8L2R0S4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937281   ⟸   XM_039081353
- Peptide Label: isoform X1
- UniProtKB: A0A8L2R4Y5 (UniProtKB/TrEMBL),   A0A8L2R0S4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937283   ⟸   XM_039081355
- Peptide Label: isoform X5
- UniProtKB: A0A8L2R0S4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937284   ⟸   XM_039081356
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038937287   ⟸   XM_039081359
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038937286   ⟸   XM_039081358
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038937288   ⟸   XM_039081360
- Peptide Label: isoform X10
Ensembl Acc Id: ENSRNOP00000090446   ⟸   ENSRNOT00000110026
RefSeq Acc Id: XP_063121401   ⟸   XM_063265331
- Peptide Label: isoform X4
- UniProtKB: A0A8L2R0S4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121400   ⟸   XM_063265330
- Peptide Label: isoform X3
- UniProtKB: Q5U3Z6 (UniProtKB/Swiss-Prot),   A0A8L2R0S4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121402   ⟸   XM_063265332
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063121403   ⟸   XM_063265333
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063121405   ⟸   XM_063265335
- Peptide Label: isoform X8
Protein Domains
Centrosomal protein Cep63/Deup1 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U3Z6-F1-model_v2 AlphaFold Q5U3Z6 1-601 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695755
Promoter ID:EPDNEW_R6278
Type:multiple initiation site
Name:Deup1_2
Description:deuterosome assembly protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R6279  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0814,156,667 - 14,156,727EPDNEW
RGD ID:13695769
Promoter ID:EPDNEW_R6279
Type:multiple initiation site
Name:Deup1_1
Description:deuterosome assembly protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R6278  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0814,157,124 - 14,157,184EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306632 AgrOrtholog
BioCyc Gene G2FUF-31629 BioCyc
Ensembl Genes ENSRNOG00000061247 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000079034.2 UniProtKB/TrEMBL
  ENSRNOT00000089364.2 UniProtKB/TrEMBL
  ENSRNOT00000110026.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7114511 IMAGE-MGC_LOAD
InterPro Cep63/Deup1_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:315438 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105854 IMAGE-MGC_LOAD
NCBI Gene 315438 ENTREZGENE
PANTHER PTHR18875:SF5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SARCOMA ANTIGEN NY-SAR-24/CYTOSKELETAL PROTEIN SOJO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CEP63 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Deup1 PhenoGen
RatGTEx ENSRNOG00000061247 RatGTEx
UniProt A0A8I6AA29_RAT UniProtKB/TrEMBL
  A0A8L2R0S4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2R4Y5 ENTREZGENE, UniProtKB/TrEMBL
  DEUP1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-07 Deup1  deuterosome assembly protein 1  Ccdc67  coiled-coil domain containing 67  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Ccdc67  coiled-coil domain containing 67  RGD1306632  similar to hypothetical protein  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1306632  similar to hypothetical protein  RGD1306632_predicted  similar to hypothetical protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1306632_predicted  similar to hypothetical protein (predicted)  LOC315438_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC315438_predicted  similar to hypothetical protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL