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Gene: Rfx1 (regulatory factor X1) Rattus norvegicus
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Symbol: Rfx1
Name: regulatory factor X1
Description: Predicted to have DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to localize to nucleoplasm. Orthologous to human RFX1 (regulatory factor X1); INTERACTS WITH bisphenol A; 2,3,7,8-tetrachlorodibenzodioxine (ortholog); 2-methylcholine (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC288906; MHC class II regulatory factor RFX1; regulatory factor X, 1 (influences HLA class II expression)
Orthologs:
Homo sapiens (human) : RFX1 (regulatory factor X1)  HGNC  Alliance
Mus musculus (house mouse) : Rfx1 (regulatory factor X, 1 (influences HLA class II expression))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Rfx1 (regulatory factor X1)
Pan paniscus (bonobo/pygmy chimpanzee) : RFX1 (regulatory factor X1)
Canis lupus familiaris (dog) : RFX1 (regulatory factor X1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Rfx1 (regulatory factor X1)
Sus scrofa (pig) : RFX1 (regulatory factor X1)
Chlorocebus sabaeus (African green monkey) : RFX1 (regulatory factor X1)
Heterocephalus glaber (naked mole-rat) : Rfx1 (regulatory factor X1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01925,181,564 - 25,212,410 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,181,564 - 25,212,410 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,157,621 - 36,189,544 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41925,745,412 - 25,776,702 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11925,750,237 - 25,781,527 (-)NCBI
Celera1923,609,413 - 23,640,097 (-)NCBICelera
Cytogenetic Map19q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Rfx1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1306574
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.