Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Alkbh2 (alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase) Rattus norvegicus
Analyze
Symbol: Alkbh2
Name: alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase
Description: Predicted to have DNA-N1-methyladenine dioxygenase activity; cytosine C-5 DNA demethylase activity; and ferrous iron binding activity. Predicted to be involved in DNA dealkylation involved in DNA repair and oxidative DNA demethylation. Predicted to localize to the microtubule cytoskeleton and nucleoplasm. Orthologous to human ALKBH2 (alkB homolog 2, alpha-ketoglutarate dependent dioxygenase); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; dibutyl phthalate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: AlkB homolog 2; alkB, alkylation repair homolog 2; alkB, alkylation repair homolog 2 (E. coli); alpha-ketoglutarate-dependent dioxygenase alkB homolog 2; DNA oxidative demethylase ALKBH2; LOC304578; RGD1306377; similar to prostate cancer antigen-1
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01248,257,575 - 48,262,244 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01250,039,893 - 50,044,572 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41243,531,682 - 43,536,317 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11243,392,394 - 43,399,689 (+)NCBI
Celera1244,100,824 - 44,105,459 (+)NCBICelera
Cytogenetic Map12q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Alkbh2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1306377
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.