Acad11 (acyl-CoA dehydrogenase family, member 11)

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Gene: Acad11 (acyl-CoA dehydrogenase family, member 11) Rattus norvegicus

Analyze

Symbol:

Acad11

Name:

acyl-CoA dehydrogenase family, member 11

RGD ID:

1306270

Description:

Predicted to enable long-chain-acyl-CoA dehydrogenase activity; medium-chain-acyl-CoA dehydrogenase activity; and very-long-chain-acyl-CoA dehydrogenase activity. Predicted to be involved in fatty acid beta-oxidation using acyl-CoA dehydrogenase. Located in peroxisome. Orthologous to human ACAD11 (acyl-CoA dehydrogenase family member 11); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ACAD-11; acyl-CoA dehydrogenase family member 11; acyl-Coenzyme A dehydrogenase family, member 11; LOC315973; RGD1306270; similar to 5730439E10Rik protein

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	104,681,346 - 104,746,559 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	104,681,396 - 104,746,560 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	110,328,511 - 110,393,633 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	8	108,527,704 - 108,592,826 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	8	106,370,404 - 106,435,529 (+)	NCBI	Rnor_WKY
Rnor_6.0	8	112,594,758 - 112,676,275 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	112,594,691 - 112,676,280 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	111,982,421 - 112,062,751 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	109,124,763 - 109,190,186 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	109,144,288 - 109,209,371 (+)	NCBI
Celera	8	104,045,620 - 104,111,515 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alkaptonuria (ISO)

developmental and epileptic encephalopathy 44 (ISO)

nephronophthisis (ISO)

Primary Lymphedema with Myelodysplasia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,1-dichloroethene (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',4,4'-tetrachlorobiphenyl (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

acetamide (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

chenodeoxycholic acid (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dichloroacetic acid (ISO)

dioxygen (ISO)

disulfiram (ISO)

diuron (EXP)

endosulfan (EXP)

entinostat (ISO)

ethanol (ISO)

genistein (EXP)

gentamycin (EXP)

glafenine (EXP)

ivermectin (ISO)

methapyrilene (EXP)

microcystin-LR (ISO)

nefazodone (EXP)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

p-toluidine (EXP)

panobinostat (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP,ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

quercetin (ISO)

quinolin-8-ol (ISO)

resveratrol (ISO)

rotenone (EXP)

sodium arsenite (ISO)

Soman (EXP)

tetrachloromethane (EXP,ISO)

thapsigargin (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triptonide (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

fatty acid beta-oxidation using acyl-CoA dehydrogenase (IBA,ISO)

Cellular Component

cytoplasm (IBA)

mitochondrial membrane (ISO)

mitochondrion (IBA)

nucleus (ISO)

peroxisome (IDA)

Molecular Function

acyl-CoA dehydrogenase activity (IBA)

flavin adenine dinucleotide binding (IEA)

long-chain-acyl-CoA dehydrogenase activity (ISO)

medium-chain-acyl-CoA dehydrogenase activity (ISO)

oxidoreductase activity, acting on the CH-CH group of donors (IEA)

protein binding (ISO)

very-long-chain-acyl-CoA dehydrogenase activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Proteomic analysis of rat liver peroxisome: presence of peroxisome-specific isozyme of Lon protease.	Kikuchi M, etal., J Biol Chem. 2004 Jan 2;279(1):421-8. Epub 2003 Oct 15.
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:18614015	PMID:21237683	PMID:30764676

Genomics

Comparative Map Data

Acad11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	104,681,346 - 104,746,559 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	104,681,396 - 104,746,560 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	110,328,511 - 110,393,633 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	8	108,527,704 - 108,592,826 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	8	106,370,404 - 106,435,529 (+)	NCBI	Rnor_WKY
Rnor_6.0	8	112,594,758 - 112,676,275 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	112,594,691 - 112,676,280 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	111,982,421 - 112,062,751 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	109,124,763 - 109,190,186 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	109,144,288 - 109,209,371 (+)	NCBI
Celera	8	104,045,620 - 104,111,515 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

ACAD11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	132,558,141 - 132,659,809 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	3	132,558,138 - 132,660,082 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	132,276,985 - 132,378,653 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	133,759,672 - 133,861,665 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	130,703,259 - 130,804,468 (-)	NCBI		Celera
Cytogenetic Map	3	q22.1	NCBI
HuRef	3	129,656,407 - 129,758,621 (-)	NCBI		HuRef
CHM1_1	3	132,239,976 - 132,341,990 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	135,302,651 - 135,404,302 (-)	NCBI		T2T-CHM13v2.0

Acad11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	103,940,923 - 104,004,855 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	103,940,576 - 104,004,924 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	104,063,724 - 104,127,656 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	104,063,377 - 104,127,725 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	103,966,033 - 104,029,976 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	103,922,048 - 103,985,991 (+)	NCBI		MGSCv36	mm8
Celera	9	103,616,515 - 103,680,741 (+)	NCBI		Celera
Cytogenetic Map	9	F1	NCBI

Acad11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955501	5,871,113 - 5,952,909 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955501	5,871,328 - 5,952,786 (+)	NCBI	ChiLan1.0	ChiLan1.0

ACAD11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	137,107,834 - 137,209,550 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	137,107,834 - 137,209,550 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	129,631,105 - 129,732,894 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

ACAD11
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	29,537,049 - 29,645,338 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	29,538,555 - 29,645,176 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	29,511,533 - 29,620,447 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	30,051,623 - 30,159,455 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	30,050,335 - 30,159,135 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	29,747,036 - 29,855,437 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	29,804,592 - 29,912,565 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	30,051,803 - 30,160,280 (-)	NCBI		UU_Cfam_GSD_1.0

Acad11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	69,155,127 - 69,236,773 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936529	5,914,539 - 5,996,902 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936529	5,915,241 - 5,997,230 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ACAD11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	73,730,171 - 73,831,701 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	73,733,508 - 73,831,496 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	81,305,201 - 81,403,413 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ACAD11
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	57,632,139 - 57,706,468 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	57,626,742 - 57,707,504 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	30,601,367 - 30,694,674 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Acad11
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	8,704,350 - 8,792,741 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	8,704,458 - 8,792,678 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Acad11
767 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	507
Count of miRNA genes:	262
Interacting mature miRNAs:	310
Transcripts:	ENSRNOT00000038383
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46531639	119088624	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	51351728	107062046	Rat
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	61290298	119084929	Rat
631653	Bp125	Blood pressure QTL 125	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	66142385	111142385	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	69349194	112783834	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	70513503	118219066	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	71888757	116888757	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	71888757	116888757	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	71888757	116888757	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	71888757	116888757	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	73473045	118473045	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	76468691	121468691	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	82460758	122812818	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	89265192	114019816	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	93535351	123900184	Rat
1358893	Bp263	Blood pressure QTL 263	5.01		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	93965141	123900184	Rat
1358903	Bp252	Blood pressure QTL 252	7	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	93965141	123900184	Rat
738014	Anxrr15	Anxiety related response QTL 15	3.6	0.005	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	95718998	123900184	Rat
2300182	Bmd56	Bone mineral density QTL 56	5.4		femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	95718998	123900184	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	100149864	120994388	Rat
631217	Activ1	Activity QTL 1	15.9		voluntary movement trait (VT:0003491)	number of photobeam interruptions in an experimental apparatus (CMO:0001517)	8	102370617	108923645	Rat

Markers in Region

BQ205714

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	104,719,597 - 104,719,785 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	112,646,962 - 112,647,149	NCBI	Rnor6.0
Rnor_5.0	8	112,034,122 - 112,034,309	UniSTS	Rnor5.0
RGSC_v3.4	8	109,163,282 - 109,163,469	UniSTS	RGSC3.4
Celera	8	104,084,459 - 104,084,646	UniSTS
RH 3.4 Map	8	1157.0	UniSTS
Cytogenetic Map	8	q32	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2		43	31	4	31	5	5		29	28	11	5
Low	1	43	14	10	15	10	3	6	74	6	13		3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC167762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000038383 ⟹ ENSRNOP00000036574

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	104,681,396 - 104,746,560 (+)	Ensembl
Rnor_6.0 Ensembl	8	112,594,691 - 112,676,280 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000081281 ⟹ ENSRNOP00000072442

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	104,681,396 - 104,726,046 (+)	Ensembl
Rnor_6.0 Ensembl	8	112,594,829 - 112,675,234 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097837 ⟹ ENSRNOP00000080596

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	104,681,396 - 104,746,560 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000118388 ⟹ ENSRNOP00000095487

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	104,681,396 - 104,746,560 (+)	Ensembl

RefSeq Acc Id:

NM_001108181 ⟹ NP_001101651

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,681,416 - 104,746,559 (+)	NCBI
Rnor_6.0	8	112,594,758 - 112,676,275 (+)	NCBI
Rnor_5.0	8	111,982,421 - 112,062,751 (+)	NCBI
RGSC_v3.4	8	109,124,763 - 109,190,186 (+)	RGD
Celera	8	104,045,620 - 104,111,515 (+)	RGD

Sequence:

show sequence

TCTGCCTTGGCGCTACGTCTGTGTAGTCTGTGGATCCCTCATTTCTATACACAGGGACAGCAGG
TGCAGTCATGGAGATGGATGTCACCAGGGACACCGTGGAAGTGCTACCCCAGCACAAGTTCGAC
ATCAGGTCCCTAGAGGCCTACCTGAATCAGCACTTGCCCGGCTTTGGGTCAGATCACCGGGCTG
TGCTGACTGTTACTCAATACAGATCAGGACAGTCGAACCCAACCTTTTTTCTCCAGAAAGGCTC
ACAAGCATACGTTCTCAGGAAGAAACCACCCGGCTCTCTTCTTCCCAAAGCGCATAAGATTGAT
AGAGAATTCAAGGTCCAGAAAGCCTTGTTTTCCGTTGGATTTCCTGTTCCCAAGCCTCTGCTGT
ACTGCAGCAATGCTTCCATTATCGGAACGGAATTTTATGTGATGGAACATGTGCAGGGTCGGAT
CTTCCGTGACTTTTCCATTCCTGGAGTTAGCCCAGCAGAACGTGCAGCTATATATGTGTCTTTG
GTAGAAACCCTGGCATGGCTACACTCTCTGGATATACACTCACTGGGACTGGACAGATACGGTA
CCGGAGTCGGGTACTGCAAAAGGCAGGTGTCCACCTGGACAAAGCAGTACCAGGCCTCCGCCCA
TCAGAGCATCCCTGCCATGGACCAACTCTCCACATGGCTAATGAGGAACCTGCCAGATAGCGAC
AATGAGGAGTGCCTGGTTCATGGAGATTTCAAGCTGGACAACATAGTTTTCCACCCCAAAGAGT
GTCGGGTTATAGCAGTGTTGGACTGGGAGCTCTCGACCTTCGGCCATCCTTTGTCAGACCTAGC
CCATCTTTCCTTGTTTTACTTTTGGCCCCGGACACTGCCCATGATAAATCGAGGCTCTCACATT
CAAGAGAACACAGGAATACCATTGATGGAAGAACTGATTTCTATATACTGCCGTCGCAGGGGAA
TTGATCCTAATCTCCCTAACTGGAATTTCTTTATGGCCCTTTCATTTTTTAAATTGGCTGGAAT
AGCACAGGGGGTCTACAGTAGATACCTCATGGGAAATAACTCATCTGAGGATAGCTTTCTCACT
GCCAATACTGTGCAGCCTCTGGCAGAAACTGGATTACAGCTGTCAAGAAGAACTCTCAGTACTG
TACCACCACAGGCTGACGCAAAAAGCCGGCTGTTTGCACAGAGCAGGAGAGGCCAGGAAGTTCT
CACTAGGGTGAAGCAGTTCATGAAGCAGCATGTCTTTCCTGCTGAAAAGGAAGTAGCTGAATAC
TATGCTCAAAATGGAAACTCAGCGGAAAAGTGGGAGCACCCCTTAGTGATTGAAAAACTAAAGG
AAATGGCCAAAGCAGAGGGCCTGTGGAACCTGTTCTTGCCTGCTGTGAGCGGTCTCAGCCAGGT
GGACTATGCCTTGATTGCTGAAGAGACAGGAAAATGCTTTTTCGCTCCAGATGTTTTTAACTGC
CAAGCACCAGACACAGGCAACATGGAGGTACTACACCTGTACGGCAGCGAGCAGCAGAAGCAGC
AGTGGCTGGAGCCTCTCCTGCGTGGCGATATCACCTCCGTCTTCTGTATGACAGAGCCCAACGT
CTCATCAAGCGATGCCACAAACATGGAGTGTAGCATCCAGAGAGATGGCGGTAGCTACATAGTT
CATGGCAAGAAGTGGTGGAGCAGCGGAGCTGGGAATCCCAAGTGCAAAATCGCAGTTGTCTTGG
GAAGAACGGAGTCTCCCTCTGTATCCAGACACAAAGTGCACAGCATGATCCTTGTGCCGATGGA
CACCCCTGGAGTAGAGTTAATAAGGCCTTTGTCGGTGTTCGGCTACATGGACAATGTGCATGGC
GGACACTGGGAGGTCCATTTTAATCACGTACGTGTTCCCGCCAGCAATTTAATATTGGGTGAAG
GCAGGGGCTTTGAAATTTCCCAAGGCCGCCTTGGACCCGGAAGAATCCACCACTGTATGAGATC
CGTGGGCTTGGCAGAACGCATTCTGCAGATCATGTGTGACCGGGCAGTGCAGAGGGAGGCCTTC
GGGAAGAAGCTCTATGAGCATGAAGTCGTGGCTCACTGGATTGCTAAAAGCCGTATTGCCATTG
AGGAGATCCGCTTACTGACCTTGAAAGCCGCTCACAGCATAGATACTCTGGGCAGTGCCGCAGC
CAGGAAGGAGATTGCAATGATCAAAGTGGCCGCCCCCAAAGCCGTCTGCAAAATAGCTGACCGG
GCCATCCAGGTGCACGGAGGCGCGGGGGTTTCCCAGGATTACCCTCTGGCTAACATGTATGCCA
TCATACGCACCCTGCGCTTGGCAGACGGTCCTGACGAAGTCCATCTCTCAGCAATTGCCAAAAT
GGAGCTTCAGGACCAAGCCAGGCAGTTGAAAGCCCGGATGTGATGGGAGCAGCCCTGGGGCACA
CTCTTGATCAGCTCAAAACCTCTGTCTCCATTTCTTGAGTAGTTTGAGCACAAGGCTAATTATT
CACCTGTGGTAACGTAGCATCTGTTTTGATCACTGGGTTTTACTATGTTAAGGATCACACAAAC
GTGAGGTAAATAGGAGACCCCATAACTGTCACTGAGTCTAGTGTCTGGGGTTAGCAGTTGCTTT
ATACACACGTGGCCTGTGACGAGGTCACACTGAGAACAGCAGAGCTATTTCTGGAGTGTCAGCA
TAATAAGTGTGTTATTTTGTGTTTCAAGAGTTAAGCCCCGAGAATACACACCCCAGGCCTATTC
AACCTTGCTTTGAAACATACGTAGCTATACCCCCACCCCCTTCAGCAGTGTTTGTGGGACTTAG
TTTAGCACCTCAGAGAAAGCTCTAACTTGAGGATTTTGGAGTGCCAGGTAAGCCTCTTCCTAAC
CCAACAGAGGAAGTTCTGGTGAAATCTGAATGCAGGTGAAAGTTCACAAGGAAATGTAGCATGT
GAGGAGAACATCAAGGAGAAGTCAAGGCCACTTACGTTACGTAGAAAAGGCTGAGGAGATCGTC
AGTAGTCAGTGCTACATCAAAGCTCTGCAGCTCCCTGAGAGCGGGTCTGATCGGGTGACACCAG
TTCTGTCAGAGCTGCCCTTGCAGTGCCACTGTGGGCCACCACACTGACTACATCGAAACATCAC
TAGTATAGCAGAGGAACAAAACGTTTAGTTTAAATACAAATTTTCAGTTCAGTTGCTGGGGAAG
GCGGTTGAGTATAGTTGGAAAGGCATGGGTGGGTACAGCTACTTATTCAAGTACACGTGTGAAA
TCTCATCACAAAGAGAAATGTTGTAAATCAAAATTTGGCATCCAAATAAACACAGTAAATGTAA
AATACATACTAGATTTTGAAAACTGAAAATAATTAAAAATGTCTACTGGATAATACCTTTACAT
ATTGATCATACTTTGAATTACATTTTGGGAATACCGGATTGAATAAAATATACTCAA

hide sequence

RefSeq Acc Id:

XM_039081558 ⟹ XP_038937486

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	104,681,346 - 104,721,316 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101651	(Get FASTA)	NCBI Sequence Viewer
	XP_038937486	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI67762	(Get FASTA)	NCBI Sequence Viewer
	B3DMA2	(Get FASTA)	NCBI Sequence Viewer
	EDL77362	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001101651 ⟸ NM_001108181

- UniProtKB:

B3DMA2 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MEMDVTRDTVEVLPQHKFDIRSLEAYLNQHLPGFGSDHRAVLTVTQYRSGQSNPTFFLQKGSQA
YVLRKKPPGSLLPKAHKIDREFKVQKALFSVGFPVPKPLLYCSNASIIGTEFYVMEHVQGRIFR
DFSIPGVSPAERAAIYVSLVETLAWLHSLDIHSLGLDRYGTGVGYCKRQVSTWTKQYQASAHQS
IPAMDQLSTWLMRNLPDSDNEECLVHGDFKLDNIVFHPKECRVIAVLDWELSTFGHPLSDLAHL
SLFYFWPRTLPMINRGSHIQENTGIPLMEELISIYCRRRGIDPNLPNWNFFMALSFFKLAGIAQ
GVYSRYLMGNNSSEDSFLTANTVQPLAETGLQLSRRTLSTVPPQADAKSRLFAQSRRGQEVLTR
VKQFMKQHVFPAEKEVAEYYAQNGNSAEKWEHPLVIEKLKEMAKAEGLWNLFLPAVSGLSQVDY
ALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEQQKQQWLEPLLRGDITSVFCMTEPNVSS
SDATNMECSIQRDGGSYIVHGKKWWSSGAGNPKCKIAVVLGRTESPSVSRHKVHSMILVPMDTP
GVELIRPLSVFGYMDNVHGGHWEVHFNHVRVPASNLILGEGRGFEISQGRLGPGRIHHCMRSVG
LAERILQIMCDRAVQREAFGKKLYEHEVVAHWIAKSRIAIEEIRLLTLKAAHSIDTLGSAAARK
EIAMIKVAAPKAVCKIADRAIQVHGGAGVSQDYPLANMYAIIRTLRLADGPDEVHLSAIAKMEL
QDQARQLKARM

hide sequence

RefSeq Acc Id:

ENSRNOP00000036574 ⟸ ENSRNOT00000038383

RefSeq Acc Id:

ENSRNOP00000072442 ⟸ ENSRNOT00000081281

RefSeq Acc Id:	XP_038937486 ⟸ XM_039081558
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSRNOP00000080596 ⟸ ENSRNOT00000097837

RefSeq Acc Id:

ENSRNOP00000095487 ⟸ ENSRNOT00000118388

Protein Domains

Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N APH

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B3DMA2-F1-model_v2	AlphaFold	B3DMA2	1-779	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696235

Promoter ID:

EPDNEW_R6760

Type:

initiation region

Name:

Acad11_1

Description:

acyl-CoA dehydrogenase family, member 11

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	112,594,780 - 112,594,840	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306270	AgrOrtholog
BioCyc Gene	G2FUF-29296	BioCyc
Ensembl Genes	ENSRNOG00000010940	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000036574	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000072442	ENTREZGENE
	ENSRNOP00000072442.2	UniProtKB/TrEMBL
	ENSRNOP00000080596.1	UniProtKB/TrEMBL
	ENSRNOP00000095487.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000038383	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000081281	ENTREZGENE
	ENSRNOT00000081281.2	UniProtKB/TrEMBL
	ENSRNOT00000097837.1	UniProtKB/TrEMBL
	ENSRNOT00000118388.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.540.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.40.110.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7443858	IMAGE-MGC_LOAD
InterPro	ACAD10_11_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Acyl-CoA_Oxase/DH_cen-dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Acyl-CoA_Oxase/DH_mid-dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	AcylCo_DH-like_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	AcylCo_DH/oxidase_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	AcylCoA_DH/ox_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	AcylCoA_DH/ox_N_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	AcylCoA_DH/oxidase_NM_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Aminoglycoside_PTrfase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Kinase-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:315973	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:187508	IMAGE-MGC_LOAD
NCBI Gene	315973	ENTREZGENE
Pfam	Acyl-CoA_dh_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Acyl-CoA_dh_M	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Acyl-CoA_dh_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	APH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Acad11	PhenoGen
Superfamily-SCOP	SSF47203	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF56112	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF56645	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZR07_RAT	UniProtKB/TrEMBL
	A0A8I6AMR1_RAT	UniProtKB/TrEMBL
	A0A8L2R5W9_RAT	UniProtKB/TrEMBL
	ACD11_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-28	Acad11	acyl-CoA dehydrogenase family, member 11	Acad11	acyl-Coenzyme A dehydrogenase family, member 11	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Acad11	acyl-Coenzyme A dehydrogenase family, member 11	Acad11_predicted	acyl-Coenzyme A dehydrogenase family, member 11 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Acad11_predicted	acyl-Coenzyme A dehydrogenase family, member 11 (predicted)	RGD1306270_predicted	similar to 5730439E10Rik protein (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1306270_predicted	similar to 5730439E10Rik protein (predicted)	LOC315973_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC315973_predicted	similar to 5730439E10Rik protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

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