 Gene Ontology Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Cellular Component
Molecular Function
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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
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Gene Annotator (Annotation Comparison) |
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Cellular Component
Molecular Function
Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | Kikuchi M, etal., J Biol Chem. 2004 Jan 2;279(1):421-8. Epub 2003 Oct 15. |
| 2. | RGD automated import pipeline for gene-chemical interactions |
References - uncuratedGenomics
Comparative Map Data| Acad11 (Rattus norvegicus - Norway rat) |
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| ACAD11 (Homo sapiens - human) |
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| Acad11 (Mus musculus - house mouse) |
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| Acad11 (Chinchilla lanigera - long-tailed chinchilla) |
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| ACAD11 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| ACAD11 (Canis lupus familiaris - dog) |
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| Acad11 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| ACAD11 (Sus scrofa - pig) |
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Position Markers| BQ205714 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| testis | heart | brain | ovary | uterus | skeletal muscle tissue | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
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| High | ||||||||||||||||
| Medium | 12 | 12 | 4 | 2 | 5 | 11 | 31 | 29 | 8 | 4 | ||||||
| Low | 10 | 43 | 23 | 3 | 3 | 1 | 3 | 26 | 25 | 11 | 10 | 6 | 4 | |||
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_001108181 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| GenBank Nucleotide | AABR07071378 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07071379 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07071380 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07071381 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01056839 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01056840 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01056841 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC167762 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473954 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ228849 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | NM_001108181 ⟹ NP_001101651 | ||||||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||
| Position: |
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| Sequence: |
TCTGCCTTGGCGCTACGTCTGTGTAGTCTGTGGATCCCTCATTTCTATACACAGGGACAGCAGGhide sequence |
Protein Sequences| Protein RefSeqs | NP_001101651 | (Get FASTA) | NCBI Sequence Viewer |
| GenBank Protein | AAI67762 | (Get FASTA) | NCBI Sequence Viewer |
| B3DMA2 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL77362 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_001101651 ⟸ NM_001108181 |
| - UniProtKB: | B3DMA2 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MEMDVTRDTVEVLPQHKFDIRSLEAYLNQHLPGFGSDHRAVLTVTQYRSGQSNPTFFLQKGSQAhide sequence |
TranscriptomePromoters| RGD ID: | 13696235 | |||||||||
| Promoter ID: | EPDNEW_R6760 | |||||||||
| Type: | initiation region | |||||||||
| Name: | Acad11_1 | |||||||||
| Description: | acyl-CoA dehydrogenase family, member 11 | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
| Experiment Methods: | Single-end sequencing. | |||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Damaging VariantsAssembly: Rnor_5.0
| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 8 | 112032274 | 112032275 | G | A | snv | IS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU) |
Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1306270 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000010940 | ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Protein | ENSRNOP00000036574 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENSRNOP00000072442 | UniProtKB/Swiss-Prot | |
| Ensembl Transcript | ENSRNOT00000038383 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENSRNOT00000081281 | UniProtKB/Swiss-Prot | |
| Gene3D-CATH | 1.10.540.10 | UniProtKB/Swiss-Prot |
| IMAGE_CLONE | IMAGE:7443858 | IMAGE-MGC_LOAD |
| InterPro | ACAD10_11_N | UniProtKB/Swiss-Prot |
| Acyl-CoA_Oxase/DH_cen-dom | UniProtKB/Swiss-Prot | |
| AcylCo_DH-like_C | UniProtKB/Swiss-Prot | |
| AcylCo_DH/oxidase_C | UniProtKB/Swiss-Prot | |
| AcylCoA_DH/ox_N | UniProtKB/Swiss-Prot | |
| AcylCoA_DH/ox_N_sf | UniProtKB/Swiss-Prot | |
| AcylCoA_DH/oxidase_NM_dom | UniProtKB/Swiss-Prot | |
| Aminoglycoside_PTrfase | UniProtKB/Swiss-Prot | |
| Kinase-like_dom_sf | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:315973 | UniProtKB/Swiss-Prot |
| MGC_CLONE | MGC:187508 | IMAGE-MGC_LOAD |
| NCBI Gene | 315973 | ENTREZGENE |
| Pfam | Acyl-CoA_dh_1 | UniProtKB/Swiss-Prot |
| Acyl-CoA_dh_M | UniProtKB/Swiss-Prot | |
| Acyl-CoA_dh_N | UniProtKB/Swiss-Prot | |
| APH | UniProtKB/Swiss-Prot | |
| PhenoGen | Acad11 | PhenoGen |
| Superfamily-SCOP | SSF47203 | UniProtKB/Swiss-Prot |
| SSF56112 | UniProtKB/Swiss-Prot | |
| SSF56645 | UniProtKB/Swiss-Prot | |
| UniGene | Rn.8651 | ENTREZGENE |
| UniProt | ACD11_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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| 2011-07-28 | Acad11 | acyl-CoA dehydrogenase family, member 11 | Acad11 | acyl-Coenzyme A dehydrogenase family, member 11 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-04-30 | Acad11 | acyl-Coenzyme A dehydrogenase family, member 11 | Acad11_predicted | acyl-Coenzyme A dehydrogenase family, member 11 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
| 2006-03-30 | Acad11_predicted | acyl-Coenzyme A dehydrogenase family, member 11 (predicted) | RGD1306270_predicted | similar to 5730439E10Rik protein (predicted) | Symbol and Name updated | 1299863 | APPROVED |
| 2005-01-20 | RGD1306270_predicted | similar to 5730439E10Rik protein (predicted) | LOC315973_predicted | Symbol and Name status set to approved | 1331353 | APPROVED | |
| 2005-01-12 | LOC315973_predicted | similar to 5730439E10Rik protein (predicted) | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on Acad11 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1306270 |
| Created: | 2005-01-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-11-27 |
| Status: | ACTIVE |
