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Gene: Pde6d (phosphodiesterase 6D) Rattus norvegicus
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Symbol: Pde6d
Name: phosphodiesterase 6D
Description: Predicted to have GTPase inhibitor activity and Rab GTPase binding activity. Predicted to be involved in negative regulation of GTPase activity and visual perception. Predicted to localize to the cytoplasmic vesicle and cytosol. Human ortholog(s) of this gene implicated in Joubert syndrome 22. Orthologous to human PDE6D (phosphodiesterase 6D); PARTICIPATES IN purine metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC363272; phosphodiesterase 6D, cGMP-specific, rod, delta; retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta
Orthologs:
Homo sapiens (human) : PDE6D (phosphodiesterase 6D)  HGNC  Alliance
Mus musculus (house mouse) : Pde6d (phosphodiesterase 6D, cGMP-specific, rod, delta)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pde6d (phosphodiesterase 6D)
Pan paniscus (bonobo/pygmy chimpanzee) : PDE6D (phosphodiesterase 6D)
Canis lupus familiaris (dog) : PDE6D (phosphodiesterase 6D)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pde6d (phosphodiesterase 6D)
Sus scrofa (pig) : PDE6D (phosphodiesterase 6D)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0993,562,099 - 93,607,061 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0993,290,035 - 93,335,020 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4985,307,907 - 85,352,836 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1985,491,326 - 85,536,271 (-)NCBI
Celera984,608,306 - 84,653,222 (-)NCBICelera
Cytogenetic Map9q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Pde6d
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1306204
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.