Prmt9 (protein arginine methyltransferase 9)

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Gene: Prmt9 (protein arginine methyltransferase 9) Rattus norvegicus

Analyze

Symbol:

Prmt9

Name:

protein arginine methyltransferase 9

RGD ID:

1306157

Description:

Predicted to enable protein-arginine omega-N monomethyltransferase activity and protein-arginine omega-N symmetric methyltransferase activity. Predicted to be involved in mRNA processing. Predicted to be located in cytoplasm. Orthologous to human PRMT9 (protein arginine methyltransferase 9); INTERACTS WITH bisphenol A; 2-hydroxypropanoic acid (ortholog); aflatoxin B1 (ortholog).

Type:

protein-coding

RefSeq Status:

INFERRED

Previously known as:

LOC291947; Prmt10; protein arginine methyltransferase 10 (putative); putative protein arginine N-methyltransferase 10; putative protein arginine N-methyltransferase 9; RGD1306157; similar to CG9882-PA

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	30,376,342 - 30,414,491 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	30,380,124 - 30,414,458 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	37,213,106 - 37,247,448 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	19	37,866,979 - 37,901,319 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	19	40,116,065 - 40,150,409 (-)	NCBI	Rnor_WKY
Rnor_6.0	19	34,067,008 - 34,105,626 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	34,070,632 - 34,105,610 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	44,948,450 - 44,987,030 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	32,192,864 - 32,227,363 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	32,197,748 - 32,266,698 (-)	NCBI
Celera	19	29,861,593 - 29,895,884 (-)	NCBI		Celera
Cytogenetic Map	19	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

methylmalonic acidemia cblA type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2-hydroxypropanoic acid (ISO)

aflatoxin B1 (ISO)

bisphenol A (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

cocaine (ISO)

lead(0) (ISO)

lead(2+) (ISO)

methyl methanesulfonate (ISO)

ozone (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

sodium arsenite (ISO)

triptonide (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA processing (ISO)

peptidyl-arginine methylation (IEA)

Cellular Component

cytoplasm (ISO)

Molecular Function

protein binding (ISO)

protein-arginine N-methyltransferase activity (ISO)

protein-arginine omega-N monomethyltransferase activity (IBA)

protein-arginine omega-N symmetric methyltransferase activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:25737013	PMID:25979344

Genomics

Comparative Map Data

Prmt9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	30,376,342 - 30,414,491 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	30,380,124 - 30,414,458 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	37,213,106 - 37,247,448 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	19	37,866,979 - 37,901,319 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	19	40,116,065 - 40,150,409 (-)	NCBI	Rnor_WKY
Rnor_6.0	19	34,067,008 - 34,105,626 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	34,070,632 - 34,105,610 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	44,948,450 - 44,987,030 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	32,192,864 - 32,227,363 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	32,197,748 - 32,266,698 (-)	NCBI
Celera	19	29,861,593 - 29,895,884 (-)	NCBI		Celera
Cytogenetic Map	19	q11	NCBI

PRMT9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	147,637,785 - 147,684,163 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	4	147,637,785 - 147,684,163 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	148,558,936 - 148,605,314 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	148,778,983 - 148,824,730 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	145,880,642 - 145,926,389 (-)	NCBI		Celera
Cytogenetic Map	4	q31.23	NCBI
HuRef	4	144,286,651 - 144,332,385 (-)	NCBI		HuRef
CHM1_1	4	148,537,945 - 148,583,674 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	150,961,873 - 151,008,254 (-)	NCBI		T2T-CHM13v2.0

Prmt9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	78,276,015 - 78,307,967 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	78,276,026 - 78,307,967 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	77,549,388 - 77,581,338 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	77,549,397 - 77,581,338 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	80,073,296 - 80,105,237 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	80,445,469 - 80,480,387 (+)	NCBI		MGSCv36	mm8
Celera	8	81,840,756 - 81,872,252 (+)	NCBI		Celera
Cytogenetic Map	8	C1	NCBI

Prmt9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955428	3,215,335 - 3,243,569 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955428	3,215,335 - 3,243,569 (-)	NCBI	ChiLan1.0	ChiLan1.0

PRMT9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	4	151,631,498 - 151,677,866 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	151,631,498 - 151,677,866 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	4	139,976,090 - 140,022,757 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

PRMT9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	45,981,568 - 46,023,026 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	45,955,356 - 46,022,854 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	46,375,218 - 46,416,576 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	46,655,810 - 46,697,198 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	46,655,001 - 46,697,194 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	45,924,097 - 45,965,491 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	46,020,836 - 46,062,599 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	46,330,525 - 46,371,891 (-)	NCBI		UU_Cfam_GSD_1.0

Prmt9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	44,374,041 - 44,420,874 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936535	1,811,360 - 1,859,288 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936535	1,811,376 - 1,855,636 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRMT9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	81,072,709 - 81,114,579 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	81,076,709 - 81,113,545 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	86,168,459 - 86,191,871 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRMT9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	94,136,300 - 94,181,668 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	94,137,041 - 94,181,627 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	73,837,443 - 73,887,254 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Prmt9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004625006	193,577 - 232,292 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004625006	193,626 - 229,414 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Prmt9
128 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	25
Count of miRNA genes:	23
Interacting mature miRNAs:	25
Transcripts:	ENSRNOT00000017347
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549847	Bss8	Bone structure and strength QTL 8	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	19	1	31963836	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	1	36824771	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	1	36824771	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	36824771	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	1	36824771	Rat
9589102	Slep13	Serum leptin concentration QTL 13	4.63	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	19	569374	45569374	Rat
8694186	Bw152	Body weight QTL 152	3.34	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	569374	45569374	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2187927	46708701	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	2316121	47316121	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	3204777	48204777	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	7457249	42983518	Rat
724565	Tcas5	Tongue tumor susceptibility QTL 5	10.04		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	19	9977753	39654489	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10827970	43544039	Rat
1558656	Prcs1	Prostate cancer susceptibility QTL 1	5		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	19	15114598	34521833	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	15455860	57337602	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	15605023	46559041	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	15630201	57337602	Rat
2298478	Eau8	Experimental allergic uveoretinitis QTL 8		0.0163	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	19	17154433	57337602	Rat
61350	Bp32	Blood pressure QTL 32		0.012	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	19	20483575	57337602	Rat
61328	Eae8	Experimental allergic encephalomyelitis QTL 8	4		nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	19	24816041	33061905	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	24817978	39654489	Rat
1354600	Salc2	Saline consumption QTL 2	9.91	0.001	drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	19	27530207	37947399	Rat
1354607	Gmadr1	Adrenal mass QTL 1	5.83		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	19	27530207	37947399	Rat
1354633	Bw28	Body weight QTL 28	6.04		body mass (VT:0001259)	body weight (CMO:0000012)	19	27530207	37947399	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	29322490	57337602	Rat

Markers in Region

BE120629

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	30,380,170 - 30,380,325 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	34,070,675 - 34,070,829	NCBI	Rnor6.0
Rnor_5.0	19	44,952,117 - 44,952,271	UniSTS	Rnor5.0
RGSC_v3.4	19	32,192,911 - 32,193,065	UniSTS	RGSC3.4
Celera	19	29,861,640 - 29,861,794	UniSTS
RH 3.4 Map	19	227.5	UniSTS
Cytogenetic Map	19	q11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	26	44	28	19	28	1	1	74	28	37	11	1
Low	1	17	13	13		13	7	10		7	4		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACYVU010000313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000017347 ⟹ ENSRNOP00000017347

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	30,380,124 - 30,414,458 (-)	Ensembl
Rnor_6.0 Ensembl	19	34,070,632 - 34,105,610 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000101255 ⟹ ENSRNOP00000094756

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	30,380,124 - 30,409,237 (-)	Ensembl

RefSeq Acc Id:

NM_001191599 ⟹ NP_001178528

RefSeq Status:

INFERRED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	30,380,124 - 30,414,458 (-)	NCBI
Rnor_6.0	19	34,070,628 - 34,105,586 (-)	NCBI
Rnor_5.0	19	44,948,450 - 44,987,030 (-)	NCBI
Celera	19	29,861,593 - 29,895,884 (-)	NCBI

Sequence:

show sequence

GCTCTGTGCACCGCACTCCTTTTCGCGTCCTGTTGCTGCGACGGGTCTAGGGAAGCGAGGTGTG
GAGACTCTTTCCGGACGAGGGCGTCCTTTTTCGTGGGCTTCTGAGCAGAGACTCAGCCATGCCG
AACTCGAGGCCCAGGTCCCGCCGGAGCGCCGGGGGTGGCGCAGGTACGGCCGGCCGGGACCGGC
TGGTGGCACAGTCCTTGCAGAGCGCTGAGCACTGTCTGGGCGACCAGGACTTCGGGACTGCCTA
CGCCCATTACCTTCTGGTGCTCAGCTTGGCGCCAGAACTCAAAGAGGACGTGAAGGAAACTTTC
CAGTATACACTTTTCAAGTGGGCTGAAGAGCTTCATGCACTGAATCGAATACAAGACTTACTTG
GTTGCTACGAGCAGGCCTTAGAGCTGTTTCCTGATGATGAAGTGATTTGCAACAGTATGGGAGA
GCATCTGTTCAGAATGGGCTTTCGAGATGAGGCAGCTGGGTATTTTCATAAAGCAGTGAAGCTA
AACCCTGATTTCAACGATGCAAAGGAGAACTTCTATCGTGTGGCAAACTGGTTGGTAGAGCGCT
GGCACTTCATCATGCTTAATGACACCAAGAGAAATGAGATTTATAACGCGGCAATCCAGAAGGC
AGTGCGGTTGGGCTCCAAAACAGTGCTGGACATTGGCGCCGGCACTGGGATACTGAGCATGTTT
GCCAAAAAAGCTGGTGCACACTCAGTATACGCCTGTGAGTTATCCAAGACCATGTATGAGCTCG
CTTGTGACGTCGTGGCTGCAAACAAGATGGAGGATGGGATCAGGCTCCTGCACATGAAGTCACT
TGATCTAGAAATACCAAAGCACATTCCTGAAAGAGTGTCCCTAGTTGTAACAGAAACTGTCGAT
GCAGGTGTGTTTGGAGAAGGAATTGTGGAGAGTTTAATTCATGCATGGGAGCATTTACTTCTGC
AACCACAGACCAAAGGTGAAAGTGGAAGTTGGGGGAAGTATGGAAAAGTGATACCGGCCAGTGC
GGTCATATCTGGGATGGCAGTGGAGTGTGCAGAGATCCGAAGGCATCACAGGGTTAGTGCTAAG
GACATAGCTGGTATACATTTACCAACAAATGTGAGATTTCAGAGCCCAGCCTATGCGTCTGTAG
ATCCCGAAGAAACGGTTGAACCATACACAACGGAAAAGATGAGTGGAATCCCTGGAGGATACCG
GCCTTTGACAGAATGCTTTCAGATTATGAAAGTTGATTTCAATAATCTCCAGGAGTTAAAAAGT
CTGGCAACTAGGAAGCCACACTCTCTTAGTGTACCTGCTGTTAAGGAAGGCACGCTGGACGCGA
TTATGGTCTGGTTTGTTCTCCAGCTTGATGACGAGCACAGTTTGTCCACAAGTCCCAGTGAGGA
GACCTGTTGGGAACAGGCTGTTTATCCAGTACAGGCACTTGAAGACTACTGGATACAGCCTGGA
GACCAAGTGACAATGGAGGCATCTTGTCACGATTGTTACCTAAGAATCCAGGGGATCAGTATCT
TGCATTTGGAACATGAAATGGAAGTTATAAAAAGTTTTACCAAGAGTAAAGACTTGCTCTCTCT
GGGAAATGAGGCTGAGCTCTGTAGTGCCCTGGCTAACCTTCAGACCAGTAGACCAGAAGCTCTG
GAGCAGACCTGTGTGTTAGAGCCCACAGAGATCGCTTTGCTTAATAACATTCCATATCATGAAG
GCTTCAGGACAGCAATGAGGAAGGTATTGTCTTCACTGGCCCCAGAGACGCCGAGCCAGCCCAT
GGAAGCTCACTGTCAGGACATGGAGACGAACTTGGAGAGTGCACCAAGCACCTCTGACCCTTTC
TATGTGTTGGATGTGTCTGAAGGCTTCTCTCTTTTGCCTATACTTGCTGGAACCCTTGGTCAGG
TTCAGCCCTACAGTTCTGTGGAGAAAGACCAGCACTGTATTGCTTTGGACCTCATATCTGAAGC
CAATCACTTCCCTAAGGAAACACTTGAGTTTTGGCTGCGACACATAGAAGATGAAGCTGCTGTG
TTGCAAAGACCCAAATCAGACAAGTTATGGAGTATAATTATACTAGATGTCATTGAGCCGTCTG
GGCTCATCCAGCAGGAGATCATGGAGAAGGCCGCAATATCCAGGTGTTTACTGCAGTCTGGAGG
CAAGATTTTCCCGCAGTACGTGCTGATGTTTGGAATGCTGGTGGAGTCACAGACGCTGGTAGAA
GAGAGTGCTGTTCAAGGAACAGAACACACTCTTGGGTTAAACATAGCACCGTTTATTAACCAGT
TTCAGGTGCCTATCCGGGTCTGTTTGGATTTATCTTCCTTGCCATGCATTCCTTTAAGCCAGCC
AGTGGAACTGTTGAGATTAGATCTGATGACTCCATATTTGAACACTTCCAATAGAGAAGTGAAG
GTCCGTGTGTGCAGGTCTGGCCGATTGACCGCGGTTCCATTTTGGTTTCATTTGTGCCTGGATG
ACGAGGTCAGGTTGGACACCTCAGGTGAAGCGTCCCATTGGAAGCAGGCTGCAGTGGTCCTAGA
TAATCCCATCCAAGTACAAGCAGGAGAGGAACTTGTACTTAGTGTTGAGCATCACAAAAGCAAC
ATCAGCATCACAGTGAAGCAGTGAGACCACGGTCACACAGCGAATGTAAGAGAATCCTTGGAAC
CGTCAACCATGTTGTACGGTGGCATTAATAAAACCCATGGTCGAACTTTTAAAA

hide sequence

RefSeq Acc Id:

XM_006255424 ⟹ XP_006255486

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	30,376,342 - 30,414,491 (-)	NCBI
Rnor_6.0	19	34,067,008 - 34,105,626 (-)	NCBI
Rnor_5.0	19	44,948,450 - 44,987,030 (-)	NCBI

Sequence:

show sequence

GTGCGCAGCTCCGTCCGCCGCCGGGAAGGCGGGGCTTCCCGCTCTGTGCACCGCACTCCTTTTC
GCGTCCTGTTGCTGCGACGGGTCTAGGGAAGCGAGGTGTGGAGACTCTTTCCGGACGAGGGCGT
CCTTTTTCGTGGGCTTCTGAGCAGAGACTCAGCCATGCCGAACTCGAGGCCCAGGTCCCGCCGG
AGCGCCGGGGGTGGCGCAGGTACGGCCGGCCGGGACCGGCTGGTGGCACAGTCCTTGCAGAGCG
CTGAGCACTGTCTGGGCGACCAGGACTTCGGGACTGCCTACGCCCATTACCTTCTGGTGCTCAG
CTTGGCGCCAGAACTCAAAGAGGACGTGAAGGAAACTTTCCAGTATACACTTTTCAAGTGGGCT
GAAGAGCTTCATGCACTGAATCGAATACAAGACTTACTTGGTTGCTACGAGCAGGCCTTAGAGC
TGTTTCCTGATGATGAAGTGATTTGCAACAGTATGGGAGAGCATCTGTTCAGAATGGGCTTTCG
AGATGAGGCAGCTGGGTATTTTCATAAAGCAGTGAAGCTAAACCCTGATTTCAACGATGCAAAG
GAGAACTTCTATCGTGTGGCAAACTGGTTGGTAGAGCGCTGGCACTTCATCATGCTTAATGACA
CCAAGAGAAATGAGATTTATAACGCGGCAATCCAGAAGGCAGTGCGGTTGGGCTCCAAAACAGT
GCTGGACATTGGCGCCGGCACTGGGATACTGAGCATGTTTGCCAAAAAAGCTGGTGCACACTCA
GTATACGCCTGTGAGTTATCCAAGACCATGTATGAGCTCGCTTGTGACGTCGTGGCTGCAAACA
AGATGGAGGATGGGATCAGGCTCCTGCACATGAAGTCACTTGATCTAGAAATACCAAAGCACAT
TCCTGAAAGAGTGTCCCTAGTTGTAACAGAAACTGTCGATGCAGGTGTGTTTGGAGAAGGAATT
GTGGAGAGTTTAATTCATGCATGGGAGCATTTACTTCTGCAACCACAGACCAAAGGTGAAAGTG
GAAGTTGGGGGAAGTATGGAAAAGTGATACCGGCCAGTGCGGTCATATCTGGGATGGCAGTGGA
GTGTGCAGAGATCCGAAGGCATCACAGGGTTAGTGCTAAGGACATAGCTGGTATACATTTACCA
ACAAATGTGAGATTTCAGAGCCCAGCCTATGCGTCTGTAGATCCCGAAGAAACGGTTGAACCAT
ACACAACGGAAAAGATGAGTGGAATCCCTGGAGGATACCGGCCTTTGACAGAATGCTTTCAGAT
TATGAAAGTTGATTTCAATAATCTCCAGGAGTTAAAAAGTCTGGCAACTAGGAAGCCACACTCT
CTTAGTGTACCTGCTGTTAAGGAAGGCACGCTGGACGCGATTATGGTCTGGTTTGTTCTCCAGC
TTGATGACGAGCACAGTTTGTCCACAAGTCCCAGTGAGGAGACCTGTTGGGAACAGGCTGTTTA
TCCAGTACAGGCACTTGAAGACTACTGGATACAGCCTGGAGACCAAGTGACAATGGAGGCATCT
TGTCACGATTGTTACCTAAGAATCCAGGGGATCAGTATCTTGCATTTGGAACATGAAATGGAAG
TTATAAAAAGTTTTACCAAGAGTAAAGACTTGCTCTCTCTGGGAAATGAGGCTGAGCTCTGTAG
TGCCCTGGCTAACCTTCAGACCAGTAGACCAGAAGCTCTGGAGCAGACCTGTGTGTTAGAGCCC
ACAGAGATCGCTTTGCTTAATAACATTCCATATCATGAAGGCTTCAGGACAGCAATGAGGAAGG
TATTGTCTTCACTGGCCCCAGAGACGCCGAGCCAGCCCATGGAAGCTCACTGTCAGGACATGGA
GACGAACTTGGAGAGTGCACCAAGCACCTCTGACCCTTTCTATGTGTTGGATGTGTCTGAAGGC
TTCTCTCTTTTGCCTATACTTGCTGGAACCCTTGGTCAGGTTCAGCCCTACAGTTCTGTGGAGA
AAGACCAGCACTGTATTGCTTTGGACCTCATATCTGAAGCCAATCACTTCCCTAAGGAAACACT
TGAGTTTTGGCTGCGACACATAGAAGATGAAGCTGCTGTGTTGCAAAGACCCAAATCAGACAAG
TTATGGAGTATAATTATACTAGATGTCATTGAGCCGTCTGGGCTCATCCAGCAGGAGATCATGG
AGAAGGCCGCAATATCCAGGTGTTTACTGCAGTCTGGAGGCAAGATTTTCCCGCAGTACGTGCT
GATGTTTGGAATGCTGGTGGAGTCACAGACGCTGGTAGAAGAGAGTGCTGTTCAAGGAACAGAA
CACACTCTTGGGTTAAACATAGCACCGTTTATTAACCAGTTTCAGGTGCCTATCCGGGTCTGTT
TGGATTTATCTTCCTTGCCATGCATTCCTTTAAGCCAGCCAGTGGAACTGTTGAGATTAGATCT
GATGACTCCATATTTGAACACTTCCAATAGAGAAGTGAAGGTCCGTGTGTGCAGGTCTGGCCGA
TTGACCGCGGTTCCATTTTGGTTTCATTTGTGCCTGGATGACGAGGTCAGGTTGGACACCTCAG
GTGAAGCGTCCCATTGGAAGCAGGCTGCAGTGGTCCTAGATAATCCCATCCAAGTACAAGCAGG
AGAGGAACTTGTACTTAGTGTTGAGCATCACAAAAGCAACATCAGCATCACAGTGAAGCAGTGA
GACCACGGTCACACAGCGAATAGCTAGAGACACGGCCCAGCAGTTAAGAGCACTGGCTGTTCTT
GCAGAGGACTGGGGTTTCAATTCAGCACCTATATGGCAGCTCCCAACAGTCT

hide sequence

RefSeq Acc Id:

XM_039097591 ⟹ XP_038953519

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	30,380,124 - 30,406,840 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178528	(Get FASTA)	NCBI Sequence Viewer
	XP_006255486	(Get FASTA)	NCBI Sequence Viewer
	XP_038953519	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001178528 ⟸ NM_001191599

- UniProtKB:

D3ZDR5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPNSRPRSRRSAGGGAGTAGRDRLVAQSLQSAEHCLGDQDFGTAYAHYLLVLSLAPELKEDVKE
TFQYTLFKWAEELHALNRIQDLLGCYEQALELFPDDEVICNSMGEHLFRMGFRDEAAGYFHKAV
KLNPDFNDAKENFYRVANWLVERWHFIMLNDTKRNEIYNAAIQKAVRLGSKTVLDIGAGTGILS
MFAKKAGAHSVYACELSKTMYELACDVVAANKMEDGIRLLHMKSLDLEIPKHIPERVSLVVTET
VDAGVFGEGIVESLIHAWEHLLLQPQTKGESGSWGKYGKVIPASAVISGMAVECAEIRRHHRVS
AKDIAGIHLPTNVRFQSPAYASVDPEETVEPYTTEKMSGIPGGYRPLTECFQIMKVDFNNLQEL
KSLATRKPHSLSVPAVKEGTLDAIMVWFVLQLDDEHSLSTSPSEETCWEQAVYPVQALEDYWIQ
PGDQVTMEASCHDCYLRIQGISILHLEHEMEVIKSFTKSKDLLSLGNEAELCSALANLQTSRPE
ALEQTCVLEPTEIALLNNIPYHEGFRTAMRKVLSSLAPETPSQPMEAHCQDMETNLESAPSTSD
PFYVLDVSEGFSLLPILAGTLGQVQPYSSVEKDQHCIALDLISEANHFPKETLEFWLRHIEDEA
AVLQRPKSDKLWSIIILDVIEPSGLIQQEIMEKAAISRCLLQSGGKIFPQYVLMFGMLVESQTL
VEESAVQGTEHTLGLNIAPFINQFQVPIRVCLDLSSLPCIPLSQPVELLRLDLMTPYLNTSNRE
VKVRVCRSGRLTAVPFWFHLCLDDEVRLDTSGEASHWKQAAVVLDNPIQVQAGEELVLSVEHHK
SNISITVKQ

hide sequence

RefSeq Acc Id:	XP_006255486 ⟸ XM_006255424
- Peptide Label:	isoform X1
- UniProtKB:	D3ZDR5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPNSRPRSRRSAGGGAGTAGRDRLVAQSLQSAEHCLGDQDFGTAYAHYLLVLSLAPELKEDVKE TFQYTLFKWAEELHALNRIQDLLGCYEQALELFPDDEVICNSMGEHLFRMGFRDEAAGYFHKAV KLNPDFNDAKENFYRVANWLVERWHFIMLNDTKRNEIYNAAIQKAVRLGSKTVLDIGAGTGILS MFAKKAGAHSVYACELSKTMYELACDVVAANKMEDGIRLLHMKSLDLEIPKHIPERVSLVVTET VDAGVFGEGIVESLIHAWEHLLLQPQTKGESGSWGKYGKVIPASAVISGMAVECAEIRRHHRVS AKDIAGIHLPTNVRFQSPAYASVDPEETVEPYTTEKMSGIPGGYRPLTECFQIMKVDFNNLQEL KSLATRKPHSLSVPAVKEGTLDAIMVWFVLQLDDEHSLSTSPSEETCWEQAVYPVQALEDYWIQ PGDQVTMEASCHDCYLRIQGISILHLEHEMEVIKSFTKSKDLLSLGNEAELCSALANLQTSRPE ALEQTCVLEPTEIALLNNIPYHEGFRTAMRKVLSSLAPETPSQPMEAHCQDMETNLESAPSTSD PFYVLDVSEGFSLLPILAGTLGQVQPYSSVEKDQHCIALDLISEANHFPKETLEFWLRHIEDEA AVLQRPKSDKLWSIIILDVIEPSGLIQQEIMEKAAISRCLLQSGGKIFPQYVLMFGMLVESQTL VEESAVQGTEHTLGLNIAPFINQFQVPIRVCLDLSSLPCIPLSQPVELLRLDLMTPYLNTSNRE VKVRVCRSGRLTAVPFWFHLCLDDEVRLDTSGEASHWKQAAVVLDNPIQVQAGEELVLSVEHHK SNISITVKQ hide sequence

RefSeq Acc Id:

ENSRNOP00000017347 ⟸ ENSRNOT00000017347

RefSeq Acc Id:	XP_038953519 ⟸ XM_039097591
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSRNOP00000094756 ⟸ ENSRNOT00000101255

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZDR5-F1-model_v2	AlphaFold	D3ZDR5	1-841	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701058

Promoter ID:

EPDNEW_R11581

Type:

initiation region

Name:

Prmt9_1

Description:

protein arginine methyltransferase 9

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	34,105,557 - 34,105,617	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306157	AgrOrtholog
BioCyc Gene	G2FUF-5903	BioCyc
Ensembl Genes	ENSRNOG00000012928	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000017347	ENTREZGENE
	ENSRNOP00000017347.6	UniProtKB/TrEMBL
	ENSRNOP00000094756.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000017347	ENTREZGENE
	ENSRNOT00000017347.8	UniProtKB/TrEMBL
	ENSRNOT00000101255.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
	3.40.50.150	UniProtKB/TrEMBL
InterPro	Arg_MeTrfase	UniProtKB/TrEMBL
	SAM-dependent_MTases-like	UniProtKB/TrEMBL
	TPR-like_helical	UniProtKB/TrEMBL
	TPR_repeat	UniProtKB/TrEMBL
KEGG Report	rno:291947	UniProtKB/TrEMBL
NCBI Gene	291947	ENTREZGENE
PANTHER	PTHR11006	UniProtKB/TrEMBL
PhenoGen	Prmt9	PhenoGen
PROSITE	SAM_MT_PRMT	UniProtKB/TrEMBL
	TPR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48452	UniProtKB/TrEMBL
	SSF53335	UniProtKB/TrEMBL
UniProt	A0A8I6AMT6_RAT	UniProtKB/TrEMBL
	D3ZDR5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-25	Prmt9	protein arginine methyltransferase 9	Prmt10	protein arginine methyltransferase 10 (putative)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-06-12	Prmt10	protein arginine methyltransferase 10 (putative)	RGD1306157	similar to CG9882-PA	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1306157	similar to CG9882-PA	RGD1306157_predicted	similar to CG9882-PA (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1306157_predicted	similar to CG9882-PA (predicted)	LOC291947_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC291947_predicted	similar to CG9882-PA (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar