 Gene Ontology Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Cellular Component
Molecular Function
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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
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Variant Visualizer (Genomic Variants) |
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 Gene Annotator (Annotation Comparison) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Cellular Component
Molecular Function
Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | RGD automated import pipeline for gene-chemical interactions |
References - uncuratedGenomics
Comparative Map Data| Prmt9 (Rattus norvegicus - Norway rat) |
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| PRMT9 (Homo sapiens - human) |
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| Prmt9 (Mus musculus - house mouse) |
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| Prmt9 (Chinchilla lanigera - long-tailed chinchilla) |
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| PRMT9 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| PRMT9 (Canis lupus familiaris - dog) |
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| Prmt9 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| PRMT9 (Sus scrofa - pig) |
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Position Markers| BE120629 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| testis | heart | brain | ovary | uterus | skeletal muscle tissue | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
| High | ||||||||||||||||
| Medium | 18 | 26 | 23 | 15 | 4 | 2 | 1 | 26 | 25 | 11 | 11 | 28 | 28 | 8 | 8 | |
| Low | 4 | 17 | 3 | 1 | 7 | 13 | 7 | |||||||||
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_001191599 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006255424 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07043652 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AAHX01098040 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01098041 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000017347 ⟹ ENSRNOP00000017347 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| RefSeq Acc Id: | NM_001191599 ⟹ NP_001178528 | |||||||||||||||||||
| RefSeq Status: | INFERRED | |||||||||||||||||||
| Type: | CODING | |||||||||||||||||||
| Position: |
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| Sequence: |
GCTCTGTGCACCGCACTCCTTTTCGCGTCCTGTTGCTGCGACGGGTCTAGGGAAGCGAGGTGTGhide sequence |
| RefSeq Acc Id: | XM_006255424 ⟹ XP_006255486 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
GTGCGCAGCTCCGTCCGCCGCCGGGAAGGCGGGGCTTCCCGCTCTGTGCACCGCACTCCTTTTChide sequence |
Protein Sequences| Protein RefSeqs | NP_001178528 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006255486 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_001178528 ⟸ NM_001191599 |
| - UniProtKB: | D3ZDR5 (UniProtKB/TrEMBL) |
| - Sequence: |
MPNSRPRSRRSAGGGAGTAGRDRLVAQSLQSAEHCLGDQDFGTAYAHYLLVLSLAPELKEDVKEhide sequence |
| RefSeq Acc Id: | XP_006255486 ⟸ XM_006255424 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | D3ZDR5 (UniProtKB/TrEMBL) |
| - Sequence: |
MPNSRPRSRRSAGGGAGTAGRDRLVAQSLQSAEHCLGDQDFGTAYAHYLLVLSLAPELKEDVKEhide sequence |
| RefSeq Acc Id: | ENSRNOP00000017347 ⟸ ENSRNOT00000017347 |
Protein Domains
TPR_REGION
TranscriptomePromoters| RGD ID: | 13701058 | |||||||||
| Promoter ID: | EPDNEW_R11581 | |||||||||
| Type: | initiation region | |||||||||
| Name: | Prmt9_1 | |||||||||
| Description: | protein arginine methyltransferase 9 | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
| Experiment Methods: | Single-end sequencing. | |||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1306157 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000012928 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000017347 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000017347 | ENTREZGENE, UniProtKB/TrEMBL |
| Gene3D-CATH | 1.25.40.10 | UniProtKB/TrEMBL |
| InterPro | Arg_MeTrfase | UniProtKB/TrEMBL |
| SAM-dependent_MTases-like | UniProtKB/TrEMBL | |
| TPR-contain | UniProtKB/TrEMBL | |
| TPR-like_helical | UniProtKB/TrEMBL | |
| TPR_repeat | UniProtKB/TrEMBL | |
| KEGG Report | rno:291947 | UniProtKB/TrEMBL |
| NCBI Gene | 291947 | ENTREZGENE |
| PhenoGen | Prmt9 | PhenoGen |
| PROSITE | SAM_MT_PRMT | UniProtKB/TrEMBL |
| TPR | UniProtKB/TrEMBL | |
| TPR_REGION | UniProtKB/TrEMBL | |
| Superfamily-SCOP | SSF48452 | UniProtKB/TrEMBL |
| SSF53335 | UniProtKB/TrEMBL | |
| UniGene | Rn.199059 | ENTREZGENE |
| UniProt | D3ZDR5 | ENTREZGENE, UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2016-02-25 | Prmt9 | protein arginine methyltransferase 9 | Prmt10 | protein arginine methyltransferase 10 (putative) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2009-06-12 | Prmt10 | protein arginine methyltransferase 10 (putative) | RGD1306157 | similar to CG9882-PA | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-04-30 | RGD1306157 | similar to CG9882-PA | RGD1306157_predicted | similar to CG9882-PA (predicted) | 'predicted' is removed | 2292626 | APPROVED |
| 2005-01-20 | RGD1306157_predicted | similar to CG9882-PA (predicted) | LOC291947_predicted | Symbol and Name status set to approved | 1331353 | APPROVED | |
| 2005-01-12 | LOC291947_predicted | similar to CG9882-PA (predicted) | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on Prmt9 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1306157 |
| Created: | 2005-01-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-11-27 |
| Status: | ACTIVE |
