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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Obsl1 | Rat | Three M Syndrome 2 | | ISO | OBSL1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Obsl1 | Rat | Three M Syndrome 2 | | ISO | OBSL1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | An OBSL1-Cul7Fbxw8 ubiquitin ligase signaling mechanism regulates Golgi morphology and dendrite patterning. | Litterman N, etal., PLoS Biol. 2011 May;9(5):e1001060. doi: 10.1371/journal.pbio.1001060. Epub 2011 May 10. |
3. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Obsl1 (Rattus norvegicus - Norway rat) |
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OBSL1 (Homo sapiens - human) |
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Obsl1 (Mus musculus - house mouse) |
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Obsl1 (Chinchilla lanigera - long-tailed chinchilla) |
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OBSL1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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OBSL1 (Canis lupus familiaris - dog) |
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Obsl1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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OBSL1 (Sus scrofa - pig) |
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OBSL1 (Chlorocebus sabaeus - green monkey) |
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Obsl1 (Heterocephalus glaber - naked mole-rat) |
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Variants in Obsl1
392 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
D9Wox10 |
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D9Mco56 |
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AA859818 |
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ECD17211 |
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REN53413 |
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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musculoskeletal system
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nervous system
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renal system
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reproductive system
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respiratory system
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sensory system
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visual system
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16 | 12 | 67 | 159 | 91 | 90 | 59 | 90 | 59 | 6 | 354 | 190 | 11 | 138 | 81 | 92 | 31 | 15 | 15 |
RefSeq Transcripts | NM_001377020 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001409045 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_001062053 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006226887 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006226888 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006226889 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006245304 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008758060 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008767309 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017596828 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039083894 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039083895 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063267420 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_343599 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | JAXUCZ010000009 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000020673 ⟹ ENSRNOP00000020673 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000103263 ⟹ ENSRNOP00000084083 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000120120 ⟹ ENSRNOP00000093392 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000144816 ⟹ ENSRNOP00000103633 | ||||||||
Type: | CODING | ||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000171612 ⟹ ENSRNOP00000101306 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001377020 ⟹ NP_001363949 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001409045 ⟹ NP_001395974 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_006245304 ⟹ XP_006245366 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_017596828 ⟹ XP_017452317 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039083894 ⟹ XP_038939822 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039083895 ⟹ XP_038939823 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063267420 ⟹ XP_063123490 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_343599 ⟹ XP_343600 | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001363949 | (Get FASTA) | NCBI Sequence Viewer |
NP_001395974 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006245366 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017452317 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038939822 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038939823 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063123490 | (Get FASTA) | NCBI Sequence Viewer | |
XP_343600 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | D3ZZ80 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSRNOP00000020673 | ||
ENSRNOP00000020673.7 | |||
ENSRNOP00000084083 | |||
ENSRNOP00000093392 |
RefSeq Acc Id: | XP_343600 ⟸ XM_343599 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I6AIN9 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006245366 ⟸ XM_006245304 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A0A8I6AIN9 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017452317 ⟸ XM_017596828 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A8I6AIN9 (UniProtKB/TrEMBL) |
- Sequence: |
Ensembl Acc Id: | ENSRNOP00000020673 ⟸ ENSRNOT00000020673 |
RefSeq Acc Id: | XP_038939823 ⟸ XM_039083895 |
- Peptide Label: | isoform X6 |
RefSeq Acc Id: | XP_038939822 ⟸ XM_039083894 |
- Peptide Label: | isoform X5 |
- UniProtKB: | A6JW41 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | NP_001363949 ⟸ NM_001377020 |
- Peptide Label: | isoform 1 |
- UniProtKB: | A0A8I6GBF5 (UniProtKB/TrEMBL) |
Ensembl Acc Id: | ENSRNOP00000093392 ⟸ ENSRNOT00000120120 |
Ensembl Acc Id: | ENSRNOP00000084083 ⟸ ENSRNOT00000103263 |
RefSeq Acc Id: | NP_001395974 ⟸ NM_001409045 |
- Peptide Label: | isoform 2 |
- UniProtKB: | D3ZZ80 (UniProtKB/Swiss-Prot), A0A8I6AIN9 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063123490 ⟸ XM_063267420 |
- Peptide Label: | isoform X4 |
- UniProtKB: | A0A8I6AIN9 (UniProtKB/TrEMBL) |
Ensembl Acc Id: | ENSRNOP00000103633 ⟸ ENSRNOT00000144816 |
Ensembl Acc Id: | ENSRNOP00000101306 ⟸ ENSRNOT00000171612 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D3ZZ80-F1-model_v2 | AlphaFold | D3ZZ80 | 1-1805 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1306073 | AgrOrtholog |
BioCyc Gene | G2FUF-27061 | BioCyc |
Ensembl Genes | ENSRNOG00000015346 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot |
Ensembl Transcript | ENSRNOT00000020673 | ENTREZGENE |
ENSRNOT00000020673.8 | UniProtKB/Swiss-Prot | |
ENSRNOT00000103263 | ENTREZGENE | |
ENSRNOT00000120120 | ENTREZGENE | |
Gene3D-CATH | 2.60.40.10 | UniProtKB/Swiss-Prot |
InterPro | FN3_dom | UniProtKB/Swiss-Prot |
FN3_sf | UniProtKB/Swiss-Prot | |
Ig-like_dom | UniProtKB/Swiss-Prot | |
Ig-like_dom_sf | UniProtKB/Swiss-Prot | |
Ig-like_fold | UniProtKB/Swiss-Prot | |
Ig_I-set | UniProtKB/Swiss-Prot | |
Ig_sub | UniProtKB/Swiss-Prot | |
Ig_sub2 | UniProtKB/Swiss-Prot | |
Obscurin/Obscurin-like_Reg | UniProtKB/Swiss-Prot | |
NCBI Gene | 363259 | ENTREZGENE |
PANTHER | OBSCURIN-LIKE PROTEIN 1 | UniProtKB/Swiss-Prot |
SI:DKEY-31G6.6 | UniProtKB/Swiss-Prot | |
Pfam | I-set | UniProtKB/Swiss-Prot |
Ig_3 | UniProtKB/Swiss-Prot | |
PhenoGen | Obsl1 | PhenoGen |
PROSITE | FN3 | UniProtKB/Swiss-Prot |
IG_LIKE | UniProtKB/Swiss-Prot | |
RatGTEx | ENSRNOG00000015346 | RatGTEx |
SMART | IGc2 | UniProtKB/Swiss-Prot |
SM00409 | UniProtKB/Swiss-Prot | |
Superfamily-SCOP | SSF48726 | UniProtKB/Swiss-Prot |
SSF49265 | UniProtKB/Swiss-Prot | |
UniProt | A0A8I6AIN9 | ENTREZGENE, UniProtKB/TrEMBL |
A0A8I6GBF5 | ENTREZGENE, UniProtKB/TrEMBL | |
A6JW40_RAT | UniProtKB/TrEMBL | |
A6JW41 | ENTREZGENE, UniProtKB/TrEMBL | |
D3ZZ80 | ENTREZGENE, UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2019-09-03 | Obsl1 | obscurin like cytoskeletal adaptor 1 | Obsl1 | obscurin-like 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-03-07 | Obsl1 | obscurin-like 1 | RGD1306073_predicted | similar to sallimus CG1915-PC (predicted) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-01-20 | RGD1306073_predicted | similar to sallimus CG1915-PC (predicted) | LOC363259_predicted | Symbol and Name status set to approved | 1331353 | APPROVED | |
2005-01-12 | LOC363259_predicted | similar to sallimus CG1915-PC (predicted) | Symbol and Name status set to provisional | 70820 | PROVISIONAL |