Csrnp1 (cysteine and serine rich nuclear protein 1) - Rat Genome Database

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Gene: Csrnp1 (cysteine and serine rich nuclear protein 1) Rattus norvegicus
Analyze
Symbol: Csrnp1
Name: cysteine and serine rich nuclear protein 1
RGD ID: 1305999
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including face morphogenesis; platelet-derived growth factor receptor signaling pathway; and roof of mouth development. Predicted to be active in nucleus. Orthologous to human CSRNP1 (cysteine and serine rich nuclear protein 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AXIN1 up-regulated 1; Axud1; cysteine-serine-rich nuclear protein 1; cysteine/serine-rich nuclear protein 1; LOC363165
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88128,582,364 - 128,594,163 (-)NCBIGRCr8
mRatBN7.28119,704,712 - 119,717,767 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8119,704,713 - 119,718,183 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8125,286,306 - 125,292,387 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08123,485,338 - 123,491,419 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08121,317,988 - 121,324,069 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08128,659,883 - 128,673,339 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8128,659,868 - 128,672,284 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08127,861,111 - 127,874,483 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48124,933,472 - 124,939,576 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18124,954,224 - 124,959,315 (-)NCBI
Celera8118,851,298 - 118,857,393 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetaldehyde  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (EXP)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
antimycin A  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
C.I. Natural Red 20  (ISO)
cadmium dichloride  (EXP)
Calcimycin  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP,ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
cytarabine  (ISO)
D-glucose  (ISO)
DDE  (ISO)
deguelin  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dieldrin  (ISO)
diethyl malate  (ISO)
dioxygen  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
epoxiconazole  (ISO)
fenthion  (ISO)
fluoranthene  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
glucose  (ISO)
glyphosate  (EXP)
imidacloprid  (EXP)
iron dichloride  (ISO)
L-methionine  (ISO)
leflunomide  (EXP,ISO)
Licochalcone B  (ISO)
mercury dichloride  (EXP)
methapyrilene  (EXP)
methimazole  (EXP)
methylisothiazolinone  (ISO)
nickel dichloride  (EXP)
niclosamide  (ISO)
orphenadrine  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
pentanal  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (EXP,ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propionic acid  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
Shikonin  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sodium hypochlorite  (ISO)
Soman  (EXP)
sunitinib  (ISO)
T-2 toxin  (ISO)
testosterone  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thiabendazole  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
torcetrapib  (ISO)
triclosan  (ISO)
triphenyl phosphate  (EXP,ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17143286   PMID:17726538   PMID:28830684  


Genomics

Comparative Map Data
Csrnp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88128,582,364 - 128,594,163 (-)NCBIGRCr8
mRatBN7.28119,704,712 - 119,717,767 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8119,704,713 - 119,718,183 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8125,286,306 - 125,292,387 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08123,485,338 - 123,491,419 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08121,317,988 - 121,324,069 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08128,659,883 - 128,673,339 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8128,659,868 - 128,672,284 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08127,861,111 - 127,874,483 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48124,933,472 - 124,939,576 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18124,954,224 - 124,959,315 (-)NCBI
Celera8118,851,298 - 118,857,393 (-)NCBICelera
Cytogenetic Map8q32NCBI
CSRNP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38339,141,855 - 39,154,641 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl339,141,855 - 39,154,562 (-)EnsemblGRCh38hg38GRCh38
GRCh37339,183,346 - 39,196,132 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36339,158,350 - 39,170,105 (-)NCBINCBI36Build 36hg18NCBI36
Build 34339,158,350 - 39,170,105NCBI
Celera339,123,855 - 39,135,613 (-)NCBICelera
Cytogenetic Map3p22.2NCBI
HuRef339,225,267 - 39,236,987 (-)NCBIHuRef
CHM1_1339,134,412 - 39,146,149 (-)NCBICHM1_1
T2T-CHM13v2.0339,154,032 - 39,166,846 (-)NCBIT2T-CHM13v2.0
Csrnp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399119,800,229 - 119,813,808 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9119,800,229 - 119,813,724 (-)EnsemblGRCm39 Ensembl
GRCm389119,971,163 - 119,984,742 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9119,971,163 - 119,984,658 (-)EnsemblGRCm38mm10GRCm38
MGSCv379119,880,284 - 119,893,776 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369119,819,864 - 119,833,356 (-)NCBIMGSCv36mm8
Celera9120,438,418 - 120,451,791 (-)NCBICelera
Cytogenetic Map9F4NCBI
cM Map971.34NCBI
Csrnp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542724,825,010 - 24,828,988 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542724,825,010 - 24,830,030 (+)NCBIChiLan1.0ChiLan1.0
CSRNP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2239,093,423 - 39,106,137 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1339,098,185 - 39,110,930 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0339,038,039 - 39,050,754 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1339,318,438 - 39,331,226 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl339,318,438 - 39,331,228 (-)Ensemblpanpan1.1panPan2
CSRNP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1238,815,848 - 8,829,062 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl238,817,053 - 8,822,979 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha238,851,706 - 8,864,913 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0239,100,430 - 9,113,613 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl239,100,766 - 9,112,381 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1238,914,084 - 8,927,283 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0239,056,600 - 9,069,784 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0239,049,815 - 9,063,034 (-)NCBIUU_Cfam_GSD_1.0
Csrnp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118195,259,949 - 195,272,557 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647328,398,543 - 28,409,962 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647328,398,528 - 28,409,962 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSRNP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1323,833,134 - 23,845,204 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11323,833,130 - 23,845,198 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21326,092,999 - 26,105,051 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CSRNP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.115262,329 - 274,003 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl15262,382 - 276,505 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660638,989,494 - 9,001,135 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csrnp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247311,829,105 - 1,841,216 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247311,829,158 - 1,841,216 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Csrnp1
32 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:665
Count of miRNA genes:284
Interacting mature miRNAs:354
Transcripts:ENSRNOT00000050543
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat

Markers in Region
RH129052  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28119,704,756 - 119,704,954 (+)MAPPERmRatBN7.2
Rnor_6.08128,659,928 - 128,660,125NCBIRnor6.0
Rnor_5.08127,861,156 - 127,861,353UniSTSRnor5.0
RGSC_v3.48124,933,516 - 124,933,713UniSTSRGSC3.4
Celera8118,851,342 - 118,851,539UniSTS
RH 3.4 Map81285.9UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000050543   ⟹   ENSRNOP00000045373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8119,704,715 - 119,718,183 (-)Ensembl
Rnor_6.0 Ensembl8128,659,884 - 128,665,988 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000083004   ⟹   ENSRNOP00000071969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8119,704,713 - 119,715,202 (-)Ensembl
Rnor_6.0 Ensembl8128,659,868 - 128,672,284 (-)Ensembl
RefSeq Acc Id: NM_001108786   ⟹   NP_001102256
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88128,582,365 - 128,588,469 (-)NCBI
mRatBN7.28119,704,713 - 119,710,817 (-)NCBI
Rnor_6.08128,659,884 - 128,665,988 (-)NCBI
Rnor_5.08127,861,111 - 127,874,483 (-)NCBI
RGSC_v3.48124,933,472 - 124,939,576 (-)RGD
Celera8118,851,298 - 118,857,393 (-)RGD
Sequence:
RefSeq Acc Id: XM_006244120   ⟹   XP_006244182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88128,582,364 - 128,594,163 (-)NCBI
mRatBN7.28119,704,712 - 119,716,510 (-)NCBI
Rnor_6.08128,659,883 - 128,671,664 (-)NCBI
Rnor_5.08127,861,111 - 127,874,483 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244121   ⟹   XP_006244183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88128,582,364 - 128,593,790 (-)NCBI
mRatBN7.28119,704,712 - 119,716,139 (-)NCBI
Rnor_6.08128,659,883 - 128,667,147 (-)NCBI
Rnor_5.08127,861,111 - 127,874,483 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039081812   ⟹   XP_038937740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88128,582,364 - 128,589,236 (-)NCBI
mRatBN7.28119,704,712 - 119,711,585 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001102256 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244182 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244183 (Get FASTA)   NCBI Sequence Viewer  
  XP_038937740 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL76892 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000045373.3
  ENSRNOP00000071969.2
RefSeq Acc Id: NP_001102256   ⟸   NM_001108786
- UniProtKB: D4AAK3 (UniProtKB/TrEMBL),   A6I3Y5 (UniProtKB/TrEMBL),   A0A0G2K1S7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244182   ⟸   XM_006244120
- Peptide Label: isoform X2
- UniProtKB: D4AAK3 (UniProtKB/TrEMBL),   A6I3Y5 (UniProtKB/TrEMBL),   A0A0G2K1S7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244183   ⟸   XM_006244121
- Peptide Label: isoform X2
- UniProtKB: D4AAK3 (UniProtKB/TrEMBL),   A6I3Y5 (UniProtKB/TrEMBL),   A0A0G2K1S7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071969   ⟸   ENSRNOT00000083004
Ensembl Acc Id: ENSRNOP00000045373   ⟸   ENSRNOT00000050543
RefSeq Acc Id: XP_038937740   ⟸   XM_039081812
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K1S7 (UniProtKB/TrEMBL)
Protein Domains
Cysteine/serine-rich nuclear protein N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AAK3-F1-model_v2 AlphaFold D4AAK3 1-581 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696379
Promoter ID:EPDNEW_R6903
Type:multiple initiation site
Name:Csrnp1_1
Description:cysteine and serine rich nuclear protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08128,672,325 - 128,672,385EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305999 AgrOrtholog
BioCyc Gene G2FUF-28774 BioCyc
Ensembl Genes ENSRNOG00000033433 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050543.4 UniProtKB/TrEMBL
  ENSRNOT00000083004.2 UniProtKB/TrEMBL
InterPro CSRNP_N UniProtKB/TrEMBL
  Cys/Ser-rich_nuc_prot UniProtKB/TrEMBL
KEGG Report rno:363165 UniProtKB/TrEMBL
NCBI Gene 363165 ENTREZGENE
PANTHER Cys/Ser-rich_nuc_prot UniProtKB/TrEMBL
  CYSTEINE/SERINE-RICH NUCLEAR PROTEIN 1 UniProtKB/TrEMBL
Pfam CSRNP_N UniProtKB/TrEMBL
PhenoGen Csrnp1 PhenoGen
PRINTS CYSSERRICHNP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000033433 RatGTEx
UniProt A0A0G2K1S7 ENTREZGENE, UniProtKB/TrEMBL
  A6I3Y5 ENTREZGENE, UniProtKB/TrEMBL
  D4AAK3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-15 Csrnp1  cysteine and serine rich nuclear protein 1  Csrnp1  cysteine-serine-rich nuclear protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-05-06 Csrnp1  cysteine-serine-rich nuclear protein 1  Axud1  AXIN1 up-regulated 1   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Axud1  AXIN1 up-regulated 1   Axud1_predicted  AXIN1 up-regulated 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Axud1_predicted  AXIN1 up-regulated 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED