Tfdp2 (transcription factor Dp-2) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Tfdp2 (transcription factor Dp-2) Rattus norvegicus
Analyze
Symbol: Tfdp2
Name: transcription factor Dp-2
RGD ID: 1305814
Description: Predicted to contribute to DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in heart development. Predicted to localize to RNA polymerase II transcription regulator complex; mitotic spindle; and nucleoplasm. Orthologous to human TFDP2 (transcription factor Dp-2); PARTICIPATES IN cell cycle pathway, mitotic; INTERACTS WITH acetamide; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC300947; Tcfdp2; transcription factor Dp 2; transcription factor Dp-2 (E2F dimerization partner 2)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Tfdp2em2Mcwi   Tfdp2em5Mcwi   Tfdp2em6Mcwi  
Genetic Models: SS-Tfdp2em6Mcwi SS-Tfdp2em5Mcwi SS-Tfdp2em2Mcwi
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08104,040,795 - 104,181,228 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8104,040,934 - 104,176,446 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08103,489,105 - 103,629,520 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48101,256,112 - 101,392,512 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18101,310,838 - 101,410,858 (+)NCBI
Celera896,270,697 - 96,340,157 (+)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-butoxyethanol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4-hydroxynon-2-enal  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
cisplatin  (EXP,ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
copper(II) chloride  (ISO)
crocidolite asbestos  (ISO)
diallyl disulfide  (EXP)
diazinon  (EXP)
dibutyl phthalate  (ISO)
dieldrin  (EXP)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
isoprenaline  (ISO)
isotretinoin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
N(6)-dimethylallyladenine  (ISO)
nickel atom  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (EXP)
p-chloromercuribenzoic acid  (ISO)
p-menthan-3-ol  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
silver(1+) nitrate  (ISO)
Soman  (EXP)
succimer  (ISO)
tamibarotene  (ISO)
tamoxifen  (ISO)
testosterone undecanoate  (ISO)
tetrachloromethane  (EXP,ISO)
topotecan  (EXP)
tremolite asbestos  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
Triptolide  (EXP)
urethane  (ISO)
valproic acid  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:7739537   PMID:9501179   PMID:11591818   PMID:12477932   PMID:16360038   PMID:20176812  


Genomics

Comparative Map Data
Tfdp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08104,040,795 - 104,181,228 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8104,040,934 - 104,176,446 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08103,489,105 - 103,629,520 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48101,256,112 - 101,392,512 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18101,310,838 - 101,410,858 (+)NCBI
Celera896,270,697 - 96,340,157 (+)NCBICelera
Cytogenetic Map8q31NCBI
TFDP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3141,944,428 - 142,149,544 (-)EnsemblGRCh38hg38GRCh38
GRCh383141,944,428 - 142,149,544 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh373141,663,270 - 141,868,386 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363143,154,018 - 143,207,067 (-)NCBINCBI36hg18NCBI36
Build 343143,153,041 - 143,230,148NCBI
Celera3140,087,011 - 140,291,943 (-)NCBI
Cytogenetic Map3q23NCBI
HuRef3139,036,150 - 139,241,398 (-)NCBIHuRef
CHM1_13141,626,317 - 141,831,403 (-)NCBICHM1_1
Tfdp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39996,078,299 - 96,205,699 (+)NCBIGRCm39mm39
GRCm38996,196,246 - 96,323,646 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl996,196,275 - 96,323,646 (+)EnsemblGRCm38mm10GRCm38
MGSCv37996,096,694 - 96,224,065 (+)NCBIGRCm37mm9NCBIm37
MGSCv36996,005,700 - 96,128,333 (+)NCBImm8
Celera995,752,654 - 95,877,737 (+)NCBICelera
Cytogenetic Map9E3.3NCBI
Tfdp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555083,722,503 - 3,844,340 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555083,722,412 - 3,844,340 (+)NCBIChiLan1.0ChiLan1.0
TFDP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13146,574,214 - 146,773,839 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3146,575,213 - 146,719,400 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03138,972,438 - 139,179,062 (-)NCBIMhudiblu_PPA_v0panPan3
TFDP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2337,757,685 - 37,871,612 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12337,757,858 - 37,871,632 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Tfdp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365403,659,082 - 3,784,794 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TFDP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1382,752,446 - 82,937,683 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11382,752,446 - 82,937,790 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TFDP2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11548,483,326 - 48,691,460 (+)NCBI
ChlSab1.1 Ensembl1548,508,217 - 48,675,608 (+)Ensembl
Tfdp2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473018,563,987 - 18,763,227 (-)NCBI

Position Markers
RH142076  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.08104,175,098 - 104,175,532NCBIRnor6.0
Rnor_5.08103,623,390 - 103,623,824UniSTSRnor5.0
RGSC_v3.48101,390,943 - 101,391,377UniSTSRGSC3.4
Celera896,338,809 - 96,339,243UniSTS
Cytogenetic Map8q31UniSTS
RH 3.4 Map81052.2UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)89531047119211942Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810938911120496129Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)829867983106526740Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)829867983106526740Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)829867983106526740Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)830918112107206309Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)833558660109028082Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)833558660109028082Rat
1578755Pur5Proteinuria QTL 53.30.0001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)833558660109028082Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)833558764113580387Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)839230130106506973Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)844458129118087517Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)847200750106394378Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)847200750106394378Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)847200750106394378Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)847200750106394378Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)847200750106394378Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)847200750106394378Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)850529480128036471Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)850529480128036471Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)850529480128036471Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)850529480128036471Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)850529563106506973Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)855435004115812386Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)858230766106394378Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)858425510106526740Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)859234112108068306Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)861394378106394378Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)861394378106394378Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)865717449128033050Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)872849686117849686Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight as a percentage of body weight (CMO:0000654)874917593121080545Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)876103982127182642Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)878805083123805083Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)878805083123805083Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)878805083123805083Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)878805083123805083Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)880697934125697934Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)883894304128894304Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)889058229132243842Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)895319530115625029Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)895963141122354314Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8100873811133307652Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8100873811133307652Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102051964133307652Rat


Genetic Models
This gene Tfdp2 is modified in the following models/strains
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:287
Count of miRNA genes:183
Interacting mature miRNAs:225
Transcripts:ENSRNOT00000015015
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 28 38 22 19 22 8 10 70 35 36 11 8
Low 1 15 19 19 19 1 4 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AABR07071195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01056468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01056469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC168961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000015015   ⟹   ENSRNOP00000015014
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl8104,106,740 - 104,176,446 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000081204   ⟹   ENSRNOP00000070243
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl8104,040,934 - 104,175,882 (+)Ensembl
RefSeq Acc Id: NM_001106847   ⟹   NP_001100317
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,106,740 - 104,176,446 (+)NCBI
Rnor_5.08103,489,105 - 103,629,520 (+)NCBI
RGSC_v3.48101,256,112 - 101,392,512 (+)RGD
Celera896,270,697 - 96,340,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243556   ⟹   XP_006243618
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,040,795 - 104,181,228 (+)NCBI
Rnor_5.08103,489,105 - 103,629,520 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243561   ⟹   XP_006243623
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,105,232 - 104,181,228 (+)NCBI
Rnor_5.08103,489,105 - 103,629,520 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243563   ⟹   XP_006243625
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,124,984 - 104,181,228 (+)NCBI
Rnor_5.08103,489,105 - 103,629,520 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243566   ⟹   XP_006243628
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,040,795 - 104,181,228 (+)NCBI
Rnor_5.08103,489,105 - 103,629,520 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243567   ⟹   XP_006243629
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,105,232 - 104,181,228 (+)NCBI
Rnor_5.08103,489,105 - 103,629,520 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243568   ⟹   XP_006243630
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,105,232 - 104,181,228 (+)NCBI
Rnor_5.08103,489,105 - 103,629,520 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243569   ⟹   XP_006243631
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,106,826 - 104,181,228 (+)NCBI
Rnor_5.08103,489,105 - 103,629,520 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243572   ⟹   XP_006243634
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,105,232 - 104,181,228 (+)NCBI
Rnor_5.08103,489,105 - 103,629,520 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008766483   ⟹   XP_008764705
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,117,857 - 104,181,228 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595582   ⟹   XP_017451071
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,040,795 - 104,181,228 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595583   ⟹   XP_017451072
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,040,795 - 104,181,228 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595584   ⟹   XP_017451073
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,040,795 - 104,181,228 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595585   ⟹   XP_017451074
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,040,795 - 104,181,228 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595586   ⟹   XP_017451075
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,040,795 - 104,181,228 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595587   ⟹   XP_017451076
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,040,795 - 104,181,228 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595588   ⟹   XP_017451077
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,040,795 - 104,181,228 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595589   ⟹   XP_017451078
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,040,795 - 104,181,228 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595590   ⟹   XP_017451079
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,040,796 - 104,181,228 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001100317   ⟸   NM_001106847
- UniProtKB: B5DF82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243618   ⟸   XM_006243556
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006243628   ⟸   XM_006243566
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006243623   ⟸   XM_006243561
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006243630   ⟸   XM_006243568
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006243629   ⟸   XM_006243567
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006243634   ⟸   XM_006243572
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006243631   ⟸   XM_006243569
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006243625   ⟸   XM_006243563
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008764705   ⟸   XM_008766483
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017451071   ⟸   XM_017595582
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017451072   ⟸   XM_017595583
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017451076   ⟸   XM_017595587
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017451075   ⟸   XM_017595586
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017451077   ⟸   XM_017595588
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017451078   ⟸   XM_017595589
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017451074   ⟸   XM_017595585
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017451073   ⟸   XM_017595584
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017451079   ⟸   XM_017595590
- Peptide Label: isoform X6
- UniProtKB: B5DF82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070243   ⟸   ENSRNOT00000081204
RefSeq Acc Id: ENSRNOP00000015014   ⟸   ENSRNOT00000015015
Protein Domains
DP   E2F_TDP

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696190
Promoter ID:EPDNEW_R6715
Type:single initiation site
Name:Tfdp2_1
Description:transcription factor Dp-2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,106,659 - 104,106,719EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305814 AgrOrtholog
Ensembl Genes ENSRNOG00000011241 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000015014 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000070243 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015015 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000081204 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  1.20.140.80 UniProtKB/TrEMBL
InterPro DP-2 UniProtKB/TrEMBL
  E2F-DP_heterodim UniProtKB/TrEMBL
  E2F_TDP UniProtKB/TrEMBL
  TF_DP_C_sf UniProtKB/TrEMBL
  Transc_factor_DP_C UniProtKB/TrEMBL
  Transcrpt_fac_DP UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report rno:300947 UniProtKB/TrEMBL
NCBI Gene 300947 ENTREZGENE
PANTHER PTHR12548 UniProtKB/TrEMBL
  PTHR12548:SF5 UniProtKB/TrEMBL
Pfam E2F_TDP UniProtKB/TrEMBL
  PF08781 UniProtKB/TrEMBL
PhenoGen Tfdp2 PhenoGen
PIRSF Transcription_factor_DP UniProtKB/TrEMBL
SMART E2F_TDP UniProtKB/TrEMBL
  SM01138 UniProtKB/TrEMBL
Superfamily-SCOP SSF144074 UniProtKB/TrEMBL
  SSF46785 UniProtKB/TrEMBL
UniGene Rn.105731 ENTREZGENE
UniProt A0A0G2JXE8_RAT UniProtKB/TrEMBL
  B5DF82 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-24 Tfdp2  transcription factor Dp-2 (E2F dimerization partner 2)  Tfdp2  transcription factor Dp 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-16 Tfdp2  transcription factor Dp 2  Tfdp2  transcription factor Dp-2 (E2F dimerization partner 2)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Tfdp2  transcription factor Dp-2 (E2F dimerization partner 2)  Tcfdp2_predicted  transcription factor Dp 2 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Tcfdp2_predicted  transcription factor Dp 2 (predicted)  Tfdp2_predicted  transcription factor Dp-2 (E2F dimerization partner 2) (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-12 Tfdp2_predicted  transcription factor Dp-2 (E2F dimerization partner 2) (predicted)      Symbol and Name status set to approved 70820 APPROVED