Nusap1 (nucleolar and spindle associated protein 1)

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Gene: Nusap1 (nucleolar and spindle associated protein 1) Rattus norvegicus

Analyze

Symbol:

Nusap1

Name:

nucleolar and spindle associated protein 1

RGD ID:

1305764

Description:

Predicted to enable microtubule binding activity. Predicted to be involved in establishment of mitotic spindle localization; mitotic chromosome condensation; and mitotic cytokinesis. Predicted to act upstream of or within mitotic sister chromatid segregation and positive regulation of mitotic nuclear division. Predicted to be located in cytoplasm and microtubule. Predicted to be active in mitotic spindle and nucleolus. Orthologous to human NUSAP1 (nucleolar and spindle associated protein 1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2-acetamidofluorene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC311336; nucleolar and spindle-associated protein 1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	106,603,273 - 106,633,624 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	106,603,289 - 106,633,624 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	110,280,915 - 110,308,758 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	118,876,460 - 118,904,305 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	116,536,849 - 116,564,692 (+)	NCBI	Rnor_WKY
Rnor_6.0	3	111,422,267 - 111,452,600 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	111,422,267 - 111,452,971 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	117,970,749 - 118,001,101 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	106,134,200 - 106,165,155 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	106,030,896 - 106,059,171 (+)	NCBI
Celera	3	105,515,032 - 105,545,305 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colorectal cancer (ISO)

Colorectal Neoplasms (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

microcephaly, seizures, and developmental delay (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3-dimethoxynaphthalene-1,4-dione (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2-acetamidofluorene (EXP)

3,4-dichloroaniline (ISO)

3-methylcholanthrene (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (EXP)

4-hydroxynon-2-enal (ISO)

4-hydroxyphenyl retinamide (ISO)

5-azacytidine (ISO)

6-propyl-2-thiouracil (EXP)

7,12-dimethyltetraphene (ISO)

acetamide (EXP)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsenous acid (ISO)

azathioprine (ISO)

azoxystrobin (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

benzophenone (EXP)

bicalutamide (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

cadmium atom (ISO)

cadmium dichloride (EXP)

caffeine (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

choline (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

cobalt dichloride (EXP,ISO)

copper atom (EXP,ISO)

copper(0) (EXP,ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

deoxynivalenol (ISO)

diarsenic trioxide (ISO)

dibenz[a,h]anthracene (ISO)

dicrotophos (ISO)

diuron (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

Enterolactone (ISO)

erythromycin estolate (EXP)

ethyl methanesulfonate (ISO)

flutamide (EXP)

folic acid (ISO)

furan (EXP)

geraniol (ISO)

irinotecan (EXP,ISO)

ketamine (EXP)

L-methionine (ISO)

leflunomide (EXP,ISO)

lidocaine (EXP)

lipopolysaccharide (ISO)

lucanthone (ISO)

methapyrilene (EXP)

methotrexate (ISO)

methyl methanesulfonate (ISO)

mitomycin C (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-methyl-N-nitrosourea (ISO)

N-nitrosodiethylamine (ISO)

N-Nitrosopyrrolidine (ISO)

nickel atom (ISO)

oxaliplatin (EXP)

ozone (ISO)

paclitaxel (ISO)

palbociclib (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorononanoic acid (ISO)

phenformin (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

PhIP (EXP)

phorbol 13-acetate 12-myristate (ISO)

phytoestrogen (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

progesterone (ISO)

propanal (ISO)

quercetin (ISO)

resveratrol (ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

senecionine (EXP)

Senkirkine (EXP)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (ISO)

tetrachloroethene (ISO)

tetrachloromethane (ISO)

thalidomide (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

titanium dioxide (EXP,ISO)

topotecan (EXP)

trichloroethene (EXP,ISO)

trimellitic anhydride (ISO)

troglitazone (ISO)

trovafloxacin (ISO)

tunicamycin (ISO)

urethane (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vincaleukoblastine (ISO)

zaragozic acid A (EXP,ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

establishment of mitotic spindle localization (IBA,ISO)

mitotic chromosome condensation (IBA,ISO)

mitotic cytokinesis (IBA,ISO)

mitotic sister chromatid segregation (ISO)

positive regulation of mitotic nuclear division (ISO)

Cellular Component

cytoplasm (IEA)

microtubule (IEA)

mitotic spindle (IBA,ISO)

nucleolus (IBA,ISO)

Molecular Function

microtubule binding (IBA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:12963707	PMID:22658674

Genomics

Comparative Map Data

Nusap1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	106,603,273 - 106,633,624 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	106,603,289 - 106,633,624 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	110,280,915 - 110,308,758 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	118,876,460 - 118,904,305 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	116,536,849 - 116,564,692 (+)	NCBI	Rnor_WKY
Rnor_6.0	3	111,422,267 - 111,452,600 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	111,422,267 - 111,452,971 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	117,970,749 - 118,001,101 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	106,134,200 - 106,165,155 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	106,030,896 - 106,059,171 (+)	NCBI
Celera	3	105,515,032 - 105,545,305 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

NUSAP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	41,332,881 - 41,381,046 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	15	41,320,794 - 41,381,050 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	41,625,079 - 41,673,244 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	39,412,361 - 39,460,538 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	15	18,392,903 - 18,441,220 (+)	NCBI		Celera
Cytogenetic Map	15	q15.1	NCBI
HuRef	15	18,473,337 - 18,521,702 (+)	NCBI		HuRef
CHM1_1	15	41,742,554 - 41,790,913 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	39,139,045 - 39,187,208 (+)	NCBI		T2T-CHM13v2.0

Nusap1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	119,448,779 - 119,480,646 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	119,448,779 - 119,481,725 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	119,618,298 - 119,650,165 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	119,618,298 - 119,651,244 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	119,444,034 - 119,475,896 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	119,309,739 - 119,341,218 (+)	NCBI		MGSCv36	mm8
Celera	2	120,771,927 - 120,806,985 (+)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI

Nusap1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	8,178,826 - 8,207,747 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955416	8,178,493 - 8,208,336 (+)	NCBI	ChiLan1.0	ChiLan1.0

NUSAP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	15	38,517,361 - 38,564,775 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	38,517,591 - 38,564,695 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	15	20,273,953 - 20,322,512 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

NUSAP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	8,358,737 - 8,435,039 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	8,396,399 - 8,434,179 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	8,417,258 - 8,494,334 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	8,492,384 - 8,569,422 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	30	8,413,914 - 8,491,071 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	8,521,393 - 8,598,669 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	8,652,709 - 8,729,631 (+)	NCBI		UU_Cfam_GSD_1.0

Nusap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	86,857,655 - 86,884,375 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	4,705,866 - 4,731,903 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936471	4,705,757 - 4,732,446 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NUSAP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	129,992,804 - 130,065,605 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	129,992,797 - 130,065,641 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	145,140,712 - 145,141,601 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NUSAP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	41,624,507 - 41,667,568 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	41,624,894 - 41,667,548 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	99,305,915 - 99,352,020 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nusap1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624804	8,510,739 - 8,540,306 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624804	8,510,628 - 8,541,007 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Nusap1
116 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	139
Count of miRNA genes:	108
Interacting mature miRNAs:	126
Transcripts:	ENSRNOT00000052312
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	50437504	115638231	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	115665732	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	64655305	115665732	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	64655305	115665732	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	73376539	118376539	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	80800231	114297550	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	89772419	134772419	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	91797474	136797474	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	95735366	140735366	Rat
1582219	Bw63	Body weight QTL 63	3.8	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	3	96127817	115665732	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	97084464	142084464	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
1582216	Bw65	Body weight QTL 65	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	102200529	115665732	Rat

Markers in Region

RH129428

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	106,633,214 - 106,633,382 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	111,452,191 - 111,452,358	NCBI	Rnor6.0
Rnor_5.0	3	118,000,692 - 118,000,859	UniSTS	Rnor5.0
RGSC_v3.4	3	106,164,746 - 106,164,913	UniSTS	RGSC3.4
Celera	3	105,544,896 - 105,545,063	UniSTS
RH 3.4 Map	3	915.09	UniSTS
Cytogenetic Map	3	q35	UniSTS

RH140127

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	106,615,823 - 106,616,003 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	111,434,800 - 111,434,979	NCBI	Rnor6.0
Rnor_5.0	3	117,983,282 - 117,983,461	UniSTS	Rnor5.0
RGSC_v3.4	3	106,146,733 - 106,146,912	UniSTS	RGSC3.4
Celera	3	105,527,556 - 105,527,735	UniSTS
RH 3.4 Map	3	913.1	UniSTS
Cytogenetic Map	3	q35	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	26	29	22	15	22			43	20	35
Low		17	26	17	4	17	8	10	29	15	6	11	8
Below cutoff			2	2		2		1	2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC107565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC161947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000052312 ⟹ ENSRNOP00000045376

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	106,603,289 - 106,633,624 (+)	Ensembl
Rnor_6.0 Ensembl	3	111,422,267 - 111,452,600 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000081934 ⟹ ENSRNOP00000070384

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	106,603,289 - 106,632,161 (+)	Ensembl
Rnor_6.0 Ensembl	3	111,422,435 - 111,452,971 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000095179 ⟹ ENSRNOP00000086496

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	106,603,558 - 106,633,624 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105321 ⟹ ENSRNOP00000089210

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	106,603,484 - 106,633,423 (+)	Ensembl

RefSeq Acc Id:

NM_001107762 ⟹ NP_001101232

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	106,603,289 - 106,633,624 (+)	NCBI
Rnor_6.0	3	111,422,267 - 111,452,600 (+)	NCBI
Rnor_5.0	3	117,970,749 - 118,001,101 (+)	NCBI
RGSC_v3.4	3	106,134,200 - 106,165,155 (+)	RGD
Celera	3	105,515,032 - 105,545,305 (+)	RGD

Sequence:

show sequence

TCATTGGACAATATTCCTGTAAGACACGCCCACAATACCCAGTGTCTGCCTATTAGGTTTGCGG
AGTAGCTGTCTTCAGCCAGTCACGCTACTGGCCCTCATAGGAAACCCCACCCTCGAGGCAGTTC
AACCAATGGGCGTACAGCATTCGTCATTTAAACTGAGTATAAAAGTCTGCTTGTCAACGTCTTG
GGTGGCGCCAGTTTTGAACGGTGCTGTTTTGAGTCGTGTGGCTGTTTTTCTGGGTATCACCGTG
ATTGCAGAACGTGATGACCGTCCCCTCTGCAGAGGAGCTGGACTCCTTCAAGTACAGCGACCTG
CAAAATTTAGCCAAAAGACTGGGCCTCCGGGCTAACCTGAGGGCAGACAAGTTGTTAAGAGCCT
TGAAAGCACACCTGAATCCAGAAACAAGAAGAGAAAATAAAAATCAGGATGAAAATCAGTCTTC
TGCATTCTCCTACGATGAGACTGAGACACAAGTCACCAGTGAGGAGCAGGCTGAGACGGAATCA
GGTAGTCATGTCACCAGAACCAGGAGGAGGAAGCGCAAGACCATCCATGGAATTCCTACCTCCC
AGGATCATATGGAGATGAAAAGAAGAGACAGCACTACATTCCAAAATCAGGAAAATCAAGACCT
CAGAGCTACTGAAAAGGTTCCTTCTCTGCCAGAGCAAAGGCCAGAAGATGGGAATGCAGCTTCC
TCAGAAGAAGGAAAAATAAACGACAAAAAGGGGCCTTTGGAAAAAAGATCTCTGTGCACGGATG
GGTTTTCTAAACTTGGGAATAGTAAAAGAATTTCAGCCACTACACCAAACTTTAAGAGGCTTCA
TGAGGCTCATTTTAAGAAAATGGAATCCATTGATGAATATATGGTGAGAAAAAAGAAACACTTT
AAAGAGCACGATTCACTTAATGAACTAAAGCTTGACAAAAAAGTGACCCCAGTTCCACCAAGAG
GGAGACTCTCTGTACTCTGCACTCCTGCGAGGCAGCGGTGCTCACAGGGCCACTCAGCAACTAA
AATGAATGTCAGGTTCTCAGCTGCTACTAAAGATAATGAACATAAGTGCTCGCTGACCAAGACA
CCAGCCAGAAAGTCCCCACATGTGACTGCACCTGGGAGTGCTTCAAAGGGCCAGGCTGTGCTCA
AGACACCAAAGTTAAAGACCACTGAGAGGAATTCCACTGCAGGAAAGCTGAAACCTTGGGGCCA
AGCTAAAGAGAATAATTCTCTGAATGAATGTGTGAGCAGAGTTACCCTGCACAGGAAAACTTAC
AAACAACCTCCTCTCCAGACCAGGGAAGAACAACGGAAGAGACATGTGCAAGAACGGAAGGAGA
GAAAAGAAAAGCTTTTGGAAGCTCGAAGAAACTTGGGTGTGACTAAAGCCCAGTGACCCTGCTG
TCCCTTTCCTCCTCATTCTCCTTTGTATGTTTTTATACTTTCTCTACTTCAATCAAAAGCTCTT
TTCTGTCATAACTTGTATAGTGCCTCCTCTGTGCTATATCTGAGAATACATTATCACCTTAAAG
TCCATAACTGAAGTGACTTTCACTTAATGTCCTGTACAACTCCAACTTTTAAAGACCTGTCCTT
GTGATCTTAAGAGCTTTTCATGTCAAGGCCCTGCTAGTCCCGATGGCGATGACCTGCATCCTTT
TCTGCACAAGAGTCCCCTGAGCGGCAAGCTGAGGCAGAAGCTCAGTGTGAGAGAGTAAGATGAC
GCTCCCAGGAGAGGGAGGCTGGGAGGCCACATTTTTGTTCAGTAGCCTGGAAAATCTATTAGTC
TTATTGAAATTATATTTTATTTTGATAGGTAAAAAGTTTTAGCTTATAAGAGCCTTGTTCTGAC
ATTTCAGGTATTTGCCAACTGTCACTCATTATAATCCTAAACTAGAAAACCTCTACGCTCTCTT
AAATAGAAGCCACAGGGCAAAGGGTGTGCCTCAGTTGTACAGCACTCAGCTATCACACACCTGC
CCCTGAATTTGACTCCTGGTCCCACCAAAAACAAAACCGAGAATGGCTGCCGTAAGAAAACCTC
CTTGGCAGACTTAGACCTCACAGTAGGAGAGGGAGCTGACCTTCTGACCTTGCTCGGCCCTGTA
GAGACTCTGAGTTGTGTGTAATGATTACAATGTTCATAAATAAAAATTTTCACTGTGATAGGTT
CCTTGTTTTAAACATGAGTTGCCTAGAATCTGGATGGCCATCTCACACCTCCTCCACCCACTTC
TCTCCCACTACTGAGACAGGGGCGCATGTATTCAAACTGGCCTCAAACTCATTTTGTATCTGAA
GATGACCTTAAACCCTTGATCCCCCTGCTTCTACCTCTCAGGTAAGTGCAGAGTTAGATGTATA

hide sequence

RefSeq Acc Id:

XM_006234768 ⟹ XP_006234830

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	106,603,431 - 106,633,428 (+)	NCBI
Rnor_6.0	3	111,422,436 - 111,452,404 (+)	NCBI
Rnor_5.0	3	117,970,749 - 118,001,101 (+)	NCBI

Sequence:

show sequence

AAAGTCTGCTTGTCAACGTCTTGGGTGGCGCCAGTTTTGAACGGTGCTGTTTTGAGTCGTGTGG
CTGTTTTTCTGGGTATCACCGTGATTGCAGAACGTGATGACCGTCCCCTCTGCAGAGGAGCTGG
ACTCCTTCAAGTACAGCGACCTGCAAAATTTAGCCAAAAGACTGGGCCTCCGGGCTAACCTGAG
GGCAGACAAGTTGTTAAGAGCCTTGAAAGCACACCTGAATCCAGAAACAAGAAGAGAAAATAAA
AATCAGGATGAAAATCAGTCTTCTGCATTCTCCTACGATGAGACTGAGACACAAGTCACCAGTG
AGGAGCAGGCTGAGACGGAATCAGGTAGTCATGTCACCAGAACCAGGAGGAGGAAGCGCAAGAC
CATCCATGGAATTCCTACCTCCCAGGATCATATGGAGATGAAAAGAAGAGACAGCACTACATTC
CAAAATCAGGAAAATCAAGACCTCAGAGCTACTGAAAAGGTTCCTTCTCTGCCAGAGCAAAGGC
CAGAAGATGGGAATGCAGCTTCCTCAGAAGAAGGAAAAATAAACGACAAAAAGGGGCCTTTGGA
AAAAAGATCTCTGTGCACGGATGGGTTTTCTAAACTTGGGAATAGTAAAAGAATTTCAGCCACT
ACACCAAACTTTAAGAGGCTTCATGAGGCTCATTTTAAGAAAATGGAATCCATTGATGAATATA
TGGTGAGAAAAAAGAAACACTTTAAAGAGCACGATTCACTTAATGAACTAAAGCAGCTTGACAA
AAAAGTGACCCCAGTTCCACCAAGAGGGAGACTCTCTGTACTCTGCACTCCTGCGAGGCAGCGG
TGCTCACAGGGCCACTCAGCAACTAAAATGAATGTCAGGTTCTCAGCTGCTACTAAAGATAATG
AACATAAGTGCTCGCTGACCAAGACACCAGCCAGAAAGTCCCCACATGTGACTGCACCTGGGAG
TGCTTCAAAGGGCCAGGCTGTGCTCAAGACACCAAAGTTAAAGACCACTGAGAGGAATTCCACT
GCAGTTATTACTCCATTCAAGTTGATGACTGAAGCAACACAGACTCCAGGTTCTAGTAAGAAAC
CGATATTTGATCTCAAAGCAAGCTTGTCTCGTCCCCTCAACTACAAGCCACACAAAGGAAAGCT
GAAACCTTGGGGCCAAGCTAAAGAGAATAATTCTCTGAATGAATGTGTGAGCAGAGTTACCCTG
CACAGGAAAACTTACAAACAACCTCCTCTCCAGACCAGGGAAGAACAACGGAAGAGACATGTGC
AAGAACGGAAGGAGAGAAAAGAAAAGCTTTTGGAAGCTCGAAGAAACTTGGGTGTGACTAAAGC
CCAGTGACCCTGCTGTCCCTTTCCTCCTCATTCTCCTTTGTATGTTTTTATACTTTCTCTACTT
CAATCAAAAGCTCTTTTCTGTCATAACTTGTATAGTGCCTCCTCTGTGCTATATCTGAGAATAC
ATTATCACCTTAAAGTCCATAACTGAAGTGACTTTCACTTAATGTCCTGTACAACTCCAACTTT
TAAAGACCTGTCCTTGTGATCTTAAGAGCTTTTCATGTCAAGGCCCTGCTAGTCCCGATGGCGA
TGACCTGCATCCTTTTCTGCACAAGAGTCCCCTGAGCGGCAAGCTGAGGCAGAAGCTCAGTGTG
AGAGAGTAAGATGACGCTCCCAGGAGAGGGAGGCTGGGAGGCCACATTTTTGTTCAGTAGCCTG
GAAAATCTATTAGTCTTATTGAAATTATATTTTATTTTGATAGGTAAAAAGTTTTAGCTTATAA
GAGCCTTGTTCTGACATTTCAGGTATTTGCCAACTGTCACTCATTATAATCCTAAACTAGAAAA
CCTCTACGCTCTCTTAAATAGAAGCCACAGGGCAAAGGGTGTGCCTCAGTTGTACAGCACTCAG
CTATCACACACCTGCCCCTGAATTTGACTCCTGGTCCCACCAAAAACAAAACCGAGAATGGCTG
CCGTAAGAAAACCTCCTTGGCAGACTTAGACCTCACAGTAGGAGAGGGAGCTGACCTTCTGACC
TTGCTCGGCCCTGTAGAGACTCTGAGTTGTGTGTAATGATTACAATGTTCATAAATAAAAATTT
TCACTGTGATA

hide sequence

RefSeq Acc Id:

XM_006234769 ⟹ XP_006234831

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	106,603,431 - 106,633,428 (+)	NCBI
Rnor_6.0	3	111,422,436 - 111,452,404 (+)	NCBI
Rnor_5.0	3	117,970,749 - 118,001,101 (+)	NCBI

Sequence:

show sequence

AAAGTCTGCTTGTCAACGTCTTGGGTGGCGCCAGTTTTGAACGGTGCTGTTTTGAGTCGTGTGG
CTGTTTTTCTGGGTATCACCGTGATTGCAGAACGTGATGACCGTCCCCTCTGCAGAGGAGCTGG
ACTCCTTCAAGTACAGCGACCTGCAAAATTTAGCCAAAAGACTGGGCCTCCGGGCTAACCTGAG
GGCAGACAAGTTGTTAAGAGCCTTGAAAGCACACCTGAATCCAGAAACAAGAAGAGAAAATAAA
AATCAGGATGAAAATCAGTCTTCTGCATTCTCCTACGATGAGACTGAGACACAAGTCACCAGTG
AGGAGCAGGCTGAGACGGAATCAGGTAGTCATGTCACCAGAACCAGGAGGAGGAAGCGCAAGAC
CATCCATGGAATTCCTACCTCCCAGGATCATATGGAGATGAAAAGAAGAGACAGCACTACATTC
CAAAATCAGGAAAATCAAGACCTCAGAGCTACTGAAAAGGTTCCTTCTCTGCCAGAGCAAAGGC
CAGAAGATGGGAATGCAGCTTCCTCAGAAGAAGGAAAAATAAACGACAAAAAGGGGCCTTTGGA
AAAAAGATCTCTGTGCACGGATGGGTTTTCTAAACTTGGGAATAGTAAAAGAATTTCAGCCACT
ACACCAAACTTTAAGAGGCTTCATGAGGCTCATTTTAAGAAAATGGAATCCATTGATGAATATA
TGGTGAGAAAAAAGAAACACTTTAAAGAGCACGATTCACTTAATGAACTAAAGCTTGACAAAAA
AGTGACCCCAGTTCCACCAAGAGGGAGACTCTCTGTACTCTGCACTCCTGCGAGGCAGCGGTGC
TCACAGGGCCACTCAGCAACTAAAATGAATGTCAGGTTCTCAGCTGCTACTAAAGATAATGAAC
ATAAGTGCTCGCTGACCAAGACACCAGCCAGAAAGTCCCCACATGTGACTGCACCTGGGAGTGC
TTCAAAGGGCCAGGCTGTGCTCAAGACACCAAAGTTAAAGACCACTGAGAGGAATTCCACTGCA
GTTATTACTCCATTCAAGTTGATGACTGAAGCAACACAGACTCCAGGTTCTAGTAAGAAACCGA
TATTTGATCTCAAAGCAAGCTTGTCTCGTCCCCTCAACTACAAGCCACACAAAGGAAAGCTGAA
ACCTTGGGGCCAAGCTAAAGAGAATAATTCTCTGAATGAATGTGTGAGCAGAGTTACCCTGCAC
AGGAAAACTTACAAACAACCTCCTCTCCAGACCAGGGAAGAACAACGGAAGAGACATGTGCAAG
AACGGAAGGAGAGAAAAGAAAAGCTTTTGGAAGCTCGAAGAAACTTGGGTGTGACTAAAGCCCA
GTGACCCTGCTGTCCCTTTCCTCCTCATTCTCCTTTGTATGTTTTTATACTTTCTCTACTTCAA
TCAAAAGCTCTTTTCTGTCATAACTTGTATAGTGCCTCCTCTGTGCTATATCTGAGAATACATT
ATCACCTTAAAGTCCATAACTGAAGTGACTTTCACTTAATGTCCTGTACAACTCCAACTTTTAA
AGACCTGTCCTTGTGATCTTAAGAGCTTTTCATGTCAAGGCCCTGCTAGTCCCGATGGCGATGA
CCTGCATCCTTTTCTGCACAAGAGTCCCCTGAGCGGCAAGCTGAGGCAGAAGCTCAGTGTGAGA
GAGTAAGATGACGCTCCCAGGAGAGGGAGGCTGGGAGGCCACATTTTTGTTCAGTAGCCTGGAA
AATCTATTAGTCTTATTGAAATTATATTTTATTTTGATAGGTAAAAAGTTTTAGCTTATAAGAG
CCTTGTTCTGACATTTCAGGTATTTGCCAACTGTCACTCATTATAATCCTAAACTAGAAAACCT
CTACGCTCTCTTAAATAGAAGCCACAGGGCAAAGGGTGTGCCTCAGTTGTACAGCACTCAGCTA
TCACACACCTGCCCCTGAATTTGACTCCTGGTCCCACCAAAAACAAAACCGAGAATGGCTGCCG
TAAGAAAACCTCCTTGGCAGACTTAGACCTCACAGTAGGAGAGGGAGCTGACCTTCTGACCTTG
CTCGGCCCTGTAGAGACTCTGAGTTGTGTGTAATGATTACAATGTTCATAAATAAAAATTTTCA
CTGTGATA

hide sequence

RefSeq Acc Id:

XM_006234770 ⟹ XP_006234832

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	106,603,273 - 106,633,428 (+)	NCBI
Rnor_6.0	3	111,422,436 - 111,452,404 (+)	NCBI
Rnor_5.0	3	117,970,749 - 118,001,101 (+)	NCBI

Sequence:

show sequence

AAAGTCTGCTTGTCAACGTCTTGGGTGGCGCCAGTTTTGAACGGTGCTGTTTTGAGTCGTGTGG
CTGTTTTTCTGGGTATCACCGTGATTGCAGAACGTGATGACCGTCCCCTCTGCAGAGGAGCTGG
ACTCCTTCAAGTACAGCGACCTGCAAAATTTAGCCAAAAGACTGGGCCTCCGGGCTAACCTGAG
GGCAGACAAGTTGTTAAGAGCCTTGAAAGCACACCTGAATCCAGAAACAAGAAGAGAAAATAAA
AATCAGGATCATATGGAGATGAAAAGAAGAGACAGCACTACATTCCAAAATCAGGAAAATCAAG
ACCTCAGAGCTACTGAAAAGGTTCCTTCTCTGCCAGAGCAAAGGCCAGAAGATGGGAATGCAGC
TTCCTCAGAAGAAGGAAAAATAAACGACAAAAAGGGGCCTTTGGAAAAAAGATCTCTGTGCACG
GATGGGTTTTCTAAACTTGGGAATAGTAAAAGAATTTCAGCCACTACACCAAACTTTAAGAGGC
TTCATGAGGCTCATTTTAAGAAAATGGAATCCATTGATGAATATATGGTGAGAAAAAAGAAACA
CTTTAAAGAGCACGATTCACTTAATGAACTAAAGCAGCTTGACAAAAAAGTGACCCCAGTTCCA
CCAAGAGGGAGACTCTCTGTACTCTGCACTCCTGCGAGGCAGCGGTGCTCACAGGGCCACTCAG
CAACTAAAATGAATGTCAGGTTCTCAGCTGCTACTAAAGATAATGAACATAAGTGCTCGCTGAC
CAAGACACCAGCCAGAAAGTCCCCACATGTGACTGCACCTGGGAGTGCTTCAAAGGGCCAGGCT
GTGCTCAAGACACCAAAGTTAAAGACCACTGAGAGGAATTCCACTGCAGTTATTACTCCATTCA
AGTTGATGACTGAAGCAACACAGACTCCAGGTTCTAGTAAGAAACCGATATTTGATCTCAAAGC
AAGCTTGTCTCGTCCCCTCAACTACAAGCCACACAAAGGAAAGCTGAAACCTTGGGGCCAAGCT
AAAGAGAATAATTCTCTGAATGAATGTGTGAGCAGAGTTACCCTGCACAGGAAAACTTACAAAC
AACCTCCTCTCCAGACCAGGGAAGAACAACGGAAGAGACATGTGCAAGAACGGAAGGAGAGAAA
AGAAAAGCTTTTGGAAGCTCGAAGAAACTTGGGTGTGACTAAAGCCCAGTGACCCTGCTGTCCC
TTTCCTCCTCATTCTCCTTTGTATGTTTTTATACTTTCTCTACTTCAATCAAAAGCTCTTTTCT
GTCATAACTTGTATAGTGCCTCCTCTGTGCTATATCTGAGAATACATTATCACCTTAAAGTCCA
TAACTGAAGTGACTTTCACTTAATGTCCTGTACAACTCCAACTTTTAAAGACCTGTCCTTGTGA
TCTTAAGAGCTTTTCATGTCAAGGCCCTGCTAGTCCCGATGGCGATGACCTGCATCCTTTTCTG
CACAAGAGTCCCCTGAGCGGCAAGCTGAGGCAGAAGCTCAGTGTGAGAGAGTAAGATGACGCTC
CCAGGAGAGGGAGGCTGGGAGGCCACATTTTTGTTCAGTAGCCTGGAAAATCTATTAGTCTTAT
TGAAATTATATTTTATTTTGATAGGTAAAAAGTTTTAGCTTATAAGAGCCTTGTTCTGACATTT
CAGGTATTTGCCAACTGTCACTCATTATAATCCTAAACTAGAAAACCTCTACGCTCTCTTAAAT
AGAAGCCACAGGGCAAAGGGTGTGCCTCAGTTGTACAGCACTCAGCTATCACACACCTGCCCCT
GAATTTGACTCCTGGTCCCACCAAAAACAAAACCGAGAATGGCTGCCGTAAGAAAACCTCCTTG
GCAGACTTAGACCTCACAGTAGGAGAGGGAGCTGACCTTCTGACCTTGCTCGGCCCTGTAGAGA
CTCTGAGTTGTGTGTAATGATTACAATGTTCATAAATAAAAATTTTCACTGTGATA

hide sequence

RefSeq Acc Id:

XM_008762101 ⟹ XP_008760323

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	106,603,285 - 106,633,428 (+)	NCBI
Rnor_6.0	3	111,422,436 - 111,452,404 (+)	NCBI

Sequence:

show sequence

AAAGTCTGCTTGTCAACGTCTTGGGTGGCGCCAGTTTTGAACGGTGCTGTTTTGAGTCGTGTGG
CTGTTTTTCTGGGTATCACCGTGATTGCAGAACGTGATGACCGTCCCCTCTGCAGAGGAGCTGG
ACTCCTTCAAGTACAGCGACCTGCAAAATTTAGCCAAAAGACTGGGCCTCCGGGCTAACCTGAG
GGCAGACAAGTTGTTAAGAGCCTTGAAAGCACACCTGAATCCAGAAACAAGAAGAGAAAATAAA
AATCAGGATGAAAATCAGTCTTCTGCATTCTCCTACGATGAGACTGAGACACAAGTCACCAGTG
AGGAGCAGGCTGAGACGGAATCAGGTAGTCATGTCACCAGAACCAGGAGGAGGAAGCGCAAGAC
CATCCATGGAATTCCTACCTCCCAGGATCATATGGAGATGAAAAGAAGAGACAGCACTACATTC
CAAAATCAGGAAAATCAAGACCTCAGAGCTACTGAAAAGGTTCCTTCTCTGCCAGAGCAAAGGC
CAGAAGATGGGAATGCAGCTTCCTCAGAAGAAGGAAAAATAAACGACTTTAAGAGGCTTCATGA
GGCTCATTTTAAGAAAATGGAATCCATTGATGAATATATGGTGAGAAAAAAGAAACACTTTAAA
GAGCACGATTCACTTAATGAACTAAAGCAGCTTGACAAAAAAGTGACCCCAGTTCCACCAAGAG
GGAGACTCTCTGTACTCTGCACTCCTGCGAGGCAGCGGTGCTCACAGGGCCACTCAGCAACTAA
AATGAATGTCAGGTTCTCAGCTGCTACTAAAGATAATGAACATAAGTGCTCGCTGACCAAGACA
CCAGCCAGAAAGTCCCCACATGTGACTGCACCTGGGAGTGCTTCAAAGGGCCAGGCTGTGCTCA
AGACACCAAAGTTAAAGACCACTGAGAGGAATTCCACTGCAGTTATTACTCCATTCAAGTTGAT
GACTGAAGCAACACAGACTCCAGGTTCTAGTAAGAAACCGATATTTGATCTCAAAGCAAGCTTG
TCTCGTCCCCTCAACTACAAGCCACACAAAGGAAAGCTGAAACCTTGGGGCCAAGCTAAAGAGA
ATAATTCTCTGAATGAATGTGTGAGCAGAGTTACCCTGCACAGGAAAACTTACAAACAACCTCC
TCTCCAGACCAGGGAAGAACAACGGAAGAGACATGTGCAAGAACGGAAGGAGAGAAAAGAAAAG
CTTTTGGAAGCTCGAAGAAACTTGGGTGTGACTAAAGCCCAGTGACCCTGCTGTCCCTTTCCTC
CTCATTCTCCTTTGTATGTTTTTATACTTTCTCTACTTCAATCAAAAGCTCTTTTCTGTCATAA
CTTGTATAGTGCCTCCTCTGTGCTATATCTGAGAATACATTATCACCTTAAAGTCCATAACTGA
AGTGACTTTCACTTAATGTCCTGTACAACTCCAACTTTTAAAGACCTGTCCTTGTGATCTTAAG
AGCTTTTCATGTCAAGGCCCTGCTAGTCCCGATGGCGATGACCTGCATCCTTTTCTGCACAAGA
GTCCCCTGAGCGGCAAGCTGAGGCAGAAGCTCAGTGTGAGAGAGTAAGATGACGCTCCCAGGAG
AGGGAGGCTGGGAGGCCACATTTTTGTTCAGTAGCCTGGAAAATCTATTAGTCTTATTGAAATT
ATATTTTATTTTGATAGGTAAAAAGTTTTAGCTTATAAGAGCCTTGTTCTGACATTTCAGGTAT
TTGCCAACTGTCACTCATTATAATCCTAAACTAGAAAACCTCTACGCTCTCTTAAATAGAAGCC
ACAGGGCAAAGGGTGTGCCTCAGTTGTACAGCACTCAGCTATCACACACCTGCCCCTGAATTTG
ACTCCTGGTCCCACCAAAAACAAAACCGAGAATGGCTGCCGTAAGAAAACCTCCTTGGCAGACT
TAGACCTCACAGTAGGAGAGGGAGCTGACCTTCTGACCTTGCTCGGCCCTGTAGAGACTCTGAG
TTGTGTGTAATGATTACAATGTTCATAAATAAAAATTTTCACTGTGATA

hide sequence

RefSeq Acc Id:

XM_008762102 ⟹ XP_008760324

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	106,603,286 - 106,633,428 (+)	NCBI
Rnor_6.0	3	111,422,436 - 111,452,404 (+)	NCBI

Sequence:

show sequence

AAAGTCTGCTTGTCAACGTCTTGGGTGGCGCCAGTTTTGAACGGTGCTGTTTTGAGTCGTGTGG
CTGTTTTTCTGGGTATCACCGTGATTGCAGAACGTGATGACCGTCCCCTCTGCAGAGGAGCTGG
ACTCCTTCAAGTACAGCGACCTGCAAAATTTAGCCAAAAGACTGGGCCTCCGGGCTAACCTGAG
GGCAGACAAGTTGTTAAGAGCCTTGAAAGCACACCTGAATCCAGAAACAAGAAGAGAAAATAAA
AATCAGGATGAAAATCAGTCTTCTGCATTCTCCTACGATGAGACTGAGACACAAGTCACCAGTG
AGGAGCAGGCTGAGACGGAATCAGGTAGTCATGTCACCAGAACCAGGAGGAGGAAGCGCAAGAC
CATCCATGGAATTCCTACCTCCCAGGATCATATGGAGATGAAAAGAAGAGACAGCACTACATTC
CAAAATCAGGAAAATCAAGACCTCAGAGCTACTGAAAAGGTTCCTTCTCTGCCAGAGCAAAGGC
CAGAAGATGGGAATGCAGCTTCCTCAGAAGAAGGAAAAATAAACGACTTTAAGAGGCTTCATGA
GGCTCATTTTAAGAAAATGGAATCCATTGATGAATATATGGTGAGAAAAAAGAAACACTTTAAA
GAGCACGATTCACTTAATGAACTAAAGCTTGACAAAAAAGTGACCCCAGTTCCACCAAGAGGGA
GACTCTCTGTACTCTGCACTCCTGCGAGGCAGCGGTGCTCACAGGGCCACTCAGCAACTAAAAT
GAATGTCAGGTTCTCAGCTGCTACTAAAGATAATGAACATAAGTGCTCGCTGACCAAGACACCA
GCCAGAAAGTCCCCACATGTGACTGCACCTGGGAGTGCTTCAAAGGGCCAGGCTGTGCTCAAGA
CACCAAAGTTAAAGACCACTGAGAGGAATTCCACTGCAGTTATTACTCCATTCAAGTTGATGAC
TGAAGCAACACAGACTCCAGGTTCTAGTAAGAAACCGATATTTGATCTCAAAGCAAGCTTGTCT
CGTCCCCTCAACTACAAGCCACACAAAGGAAAGCTGAAACCTTGGGGCCAAGCTAAAGAGAATA
ATTCTCTGAATGAATGTGTGAGCAGAGTTACCCTGCACAGGAAAACTTACAAACAACCTCCTCT
CCAGACCAGGGAAGAACAACGGAAGAGACATGTGCAAGAACGGAAGGAGAGAAAAGAAAAGCTT
TTGGAAGCTCGAAGAAACTTGGGTGTGACTAAAGCCCAGTGACCCTGCTGTCCCTTTCCTCCTC
ATTCTCCTTTGTATGTTTTTATACTTTCTCTACTTCAATCAAAAGCTCTTTTCTGTCATAACTT
GTATAGTGCCTCCTCTGTGCTATATCTGAGAATACATTATCACCTTAAAGTCCATAACTGAAGT
GACTTTCACTTAATGTCCTGTACAACTCCAACTTTTAAAGACCTGTCCTTGTGATCTTAAGAGC
TTTTCATGTCAAGGCCCTGCTAGTCCCGATGGCGATGACCTGCATCCTTTTCTGCACAAGAGTC
CCCTGAGCGGCAAGCTGAGGCAGAAGCTCAGTGTGAGAGAGTAAGATGACGCTCCCAGGAGAGG
GAGGCTGGGAGGCCACATTTTTGTTCAGTAGCCTGGAAAATCTATTAGTCTTATTGAAATTATA
TTTTATTTTGATAGGTAAAAAGTTTTAGCTTATAAGAGCCTTGTTCTGACATTTCAGGTATTTG
CCAACTGTCACTCATTATAATCCTAAACTAGAAAACCTCTACGCTCTCTTAAATAGAAGCCACA
GGGCAAAGGGTGTGCCTCAGTTGTACAGCACTCAGCTATCACACACCTGCCCCTGAATTTGACT
CCTGGTCCCACCAAAAACAAAACCGAGAATGGCTGCCGTAAGAAAACCTCCTTGGCAGACTTAG
ACCTCACAGTAGGAGAGGGAGCTGACCTTCTGACCTTGCTCGGCCCTGTAGAGACTCTGAGTTG
TGTGTAATGATTACAATGTTCATAAATAAAAATTTTCACTGTGATA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101232	(Get FASTA)	NCBI Sequence Viewer
	NP_001386460	(Get FASTA)	NCBI Sequence Viewer
	NP_001386462	(Get FASTA)	NCBI Sequence Viewer
	XP_006234830	(Get FASTA)	NCBI Sequence Viewer
	XP_006234831	(Get FASTA)	NCBI Sequence Viewer
	XP_006234832	(Get FASTA)	NCBI Sequence Viewer
	XP_008760323	(Get FASTA)	NCBI Sequence Viewer
	XP_008760324	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI61947	(Get FASTA)	NCBI Sequence Viewer
	EDL79917	(Get FASTA)	NCBI Sequence Viewer
	EDL79918	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001101232 ⟸ NM_001107762

- UniProtKB:

D4AAK2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTVPSAEELDSFKYSDLQNLAKRLGLRANLRADKLLRALKAHLNPETRRENKNQDENQSSAFSY
DETETQVTSEEQAETESGSHVTRTRRRKRKTIHGIPTSQDHMEMKRRDSTTFQNQENQDLRATE
KVPSLPEQRPEDGNAASSEEGKINDKKGPLEKRSLCTDGFSKLGNSKRISATTPNFKRLHEAHF
KKMESIDEYMVRKKKHFKEHDSLNELKLDKKVTPVPPRGRLSVLCTPARQRCSQGHSATKMNVR
FSAATKDNEHKCSLTKTPARKSPHVTAPGSASKGQAVLKTPKLKTTERNSTAGKLKPWGQAKEN
NSLNECVSRVTLHRKTYKQPPLQTREEQRKRHVQERKERKEKLLEARRNLGVTKAQ

hide sequence

RefSeq Acc Id:	XP_006234830 ⟸ XM_006234768
- Peptide Label:	isoform X1
- UniProtKB:	B1WBZ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTVPSAEELDSFKYSDLQNLAKRLGLRANLRADKLLRALKAHLNPETRRENKNQDENQSSAFSY DETETQVTSEEQAETESGSHVTRTRRRKRKTIHGIPTSQDHMEMKRRDSTTFQNQENQDLRATE KVPSLPEQRPEDGNAASSEEGKINDKKGPLEKRSLCTDGFSKLGNSKRISATTPNFKRLHEAHF KKMESIDEYMVRKKKHFKEHDSLNELKQLDKKVTPVPPRGRLSVLCTPARQRCSQGHSATKMNV RFSAATKDNEHKCSLTKTPARKSPHVTAPGSASKGQAVLKTPKLKTTERNSTAVITPFKLMTEA TQTPGSSKKPIFDLKASLSRPLNYKPHKGKLKPWGQAKENNSLNECVSRVTLHRKTYKQPPLQT REEQRKRHVQERKERKEKLLEARRNLGVTKAQ hide sequence

RefSeq Acc Id:

XP_006234831 ⟸ XM_006234769

- Peptide Label:

isoform X2

- Sequence:

show sequence

MTVPSAEELDSFKYSDLQNLAKRLGLRANLRADKLLRALKAHLNPETRRENKNQDENQSSAFSY
DETETQVTSEEQAETESGSHVTRTRRRKRKTIHGIPTSQDHMEMKRRDSTTFQNQENQDLRATE
KVPSLPEQRPEDGNAASSEEGKINDKKGPLEKRSLCTDGFSKLGNSKRISATTPNFKRLHEAHF
KKMESIDEYMVRKKKHFKEHDSLNELKLDKKVTPVPPRGRLSVLCTPARQRCSQGHSATKMNVR
FSAATKDNEHKCSLTKTPARKSPHVTAPGSASKGQAVLKTPKLKTTERNSTAVITPFKLMTEAT
QTPGSSKKPIFDLKASLSRPLNYKPHKGKLKPWGQAKENNSLNECVSRVTLHRKTYKQPPLQTR
EEQRKRHVQERKERKEKLLEARRNLGVTKAQ

hide sequence

RefSeq Acc Id:

XP_006234832 ⟸ XM_006234770

- Peptide Label:

isoform X5

- Sequence:

show sequence

MTVPSAEELDSFKYSDLQNLAKRLGLRANLRADKLLRALKAHLNPETRRENKNQDHMEMKRRDS
TTFQNQENQDLRATEKVPSLPEQRPEDGNAASSEEGKINDKKGPLEKRSLCTDGFSKLGNSKRI
SATTPNFKRLHEAHFKKMESIDEYMVRKKKHFKEHDSLNELKQLDKKVTPVPPRGRLSVLCTPA
RQRCSQGHSATKMNVRFSAATKDNEHKCSLTKTPARKSPHVTAPGSASKGQAVLKTPKLKTTER
NSTAVITPFKLMTEATQTPGSSKKPIFDLKASLSRPLNYKPHKGKLKPWGQAKENNSLNECVSR
VTLHRKTYKQPPLQTREEQRKRHVQERKERKEKLLEARRNLGVTKAQ

hide sequence

RefSeq Acc Id:

XP_008760323 ⟸ XM_008762101

- Peptide Label:

isoform X3

- Sequence:

show sequence

MTVPSAEELDSFKYSDLQNLAKRLGLRANLRADKLLRALKAHLNPETRRENKNQDENQSSAFSY
DETETQVTSEEQAETESGSHVTRTRRRKRKTIHGIPTSQDHMEMKRRDSTTFQNQENQDLRATE
KVPSLPEQRPEDGNAASSEEGKINDFKRLHEAHFKKMESIDEYMVRKKKHFKEHDSLNELKQLD
KKVTPVPPRGRLSVLCTPARQRCSQGHSATKMNVRFSAATKDNEHKCSLTKTPARKSPHVTAPG
SASKGQAVLKTPKLKTTERNSTAVITPFKLMTEATQTPGSSKKPIFDLKASLSRPLNYKPHKGK
LKPWGQAKENNSLNECVSRVTLHRKTYKQPPLQTREEQRKRHVQERKERKEKLLEARRNLGVTK
AQ

hide sequence

RefSeq Acc Id:	XP_008760324 ⟸ XM_008762102
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AB59 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTVPSAEELDSFKYSDLQNLAKRLGLRANLRADKLLRALKAHLNPETRRENKNQDENQSSAFSY DETETQVTSEEQAETESGSHVTRTRRRKRKTIHGIPTSQDHMEMKRRDSTTFQNQENQDLRATE KVPSLPEQRPEDGNAASSEEGKINDFKRLHEAHFKKMESIDEYMVRKKKHFKEHDSLNELKLDK KVTPVPPRGRLSVLCTPARQRCSQGHSATKMNVRFSAATKDNEHKCSLTKTPARKSPHVTAPGS ASKGQAVLKTPKLKTTERNSTAVITPFKLMTEATQTPGSSKKPIFDLKASLSRPLNYKPHKGKL KPWGQAKENNSLNECVSRVTLHRKTYKQPPLQTREEQRKRHVQERKERKEKLLEARRNLGVTKA Q hide sequence

RefSeq Acc Id:

ENSRNOP00000070384 ⟸ ENSRNOT00000081934

RefSeq Acc Id:

ENSRNOP00000045376 ⟸ ENSRNOT00000052312

RefSeq Acc Id:

ENSRNOP00000089210 ⟸ ENSRNOT00000105321

RefSeq Acc Id:

ENSRNOP00000086496 ⟸ ENSRNOT00000095179

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JXS3-F1-model_v2	AlphaFold	A0A0G2JXS3	1-384	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692331

Promoter ID:

EPDNEW_R2854

Type:

multiple initiation site

Name:

Nusap1_1

Description:

nucleolar and spindle associated protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	111,422,462 - 111,422,522	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305764	AgrOrtholog
BioCyc Gene	G2FUF-48196	BioCyc
Ensembl Genes	ENSRNOG00000004921	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000045376	ENTREZGENE
	ENSRNOP00000045376.3	UniProtKB/TrEMBL
	ENSRNOP00000070384	ENTREZGENE
	ENSRNOP00000070384.2	UniProtKB/TrEMBL
	ENSRNOP00000086496.1	UniProtKB/TrEMBL
	ENSRNOP00000089210	ENTREZGENE
	ENSRNOP00000089210.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000052312	ENTREZGENE
	ENSRNOT00000052312.5	UniProtKB/TrEMBL
	ENSRNOT00000081934	ENTREZGENE
	ENSRNOT00000081934.2	UniProtKB/TrEMBL
	ENSRNOT00000095179.1	UniProtKB/TrEMBL
	ENSRNOT00000105321	ENTREZGENE
	ENSRNOT00000105321.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:9025380	IMAGE-MGC_LOAD
InterPro	NuSAP	UniProtKB/TrEMBL
KEGG Report	rno:311336	UniProtKB/TrEMBL
MGC_CLONE	MGC:187740	IMAGE-MGC_LOAD
NCBI Gene	311336	ENTREZGENE
PANTHER	NUCLEOLAR AND SPINDLE-ASSOCIATED PROTEIN 1	UniProtKB/TrEMBL
	PTHR15874	UniProtKB/TrEMBL
Pfam	NUSAP	UniProtKB/TrEMBL
PhenoGen	Nusap1	PhenoGen
UniProt	A0A0G2JXS3_RAT	UniProtKB/TrEMBL
	A0A8I6A2C0_RAT	UniProtKB/TrEMBL
	A0A8I6AB59	ENTREZGENE, UniProtKB/TrEMBL
	B1WBZ5	ENTREZGENE, UniProtKB/TrEMBL
	D4AAK2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Nusap1	nucleolar and spindle associated protein 1	Nusap1_predicted	nucleolar and spindle associated protein 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Nusap1_predicted	nucleolar and spindle associated protein 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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