Tubgcp3 (tubulin, gamma complex associated protein 3) - Rat Genome Database
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Gene: Tubgcp3 (tubulin, gamma complex associated protein 3) Rattus norvegicus
Analyze
Symbol: Tubgcp3
Name: tubulin, gamma complex associated protein 3
RGD ID: 1305726
Description: Predicted to contribute to microtubule minus-end binding activity. Predicted to be involved in meiotic cell cycle; microtubule cytoskeleton organization; and mitotic cell cycle. Predicted to localize to cytoplasm and microtubule cytoskeleton. Orthologous to human TUBGCP3 (tubulin gamma complex associated protein 3); INTERACTS WITH bisphenol A; flutamide; furan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: gamma-tubulin complex component 3; LOC306599
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21676,851,859 - 76,912,499 (+)NCBI
Rnor_6.0 Ensembl1682,184,387 - 82,245,041 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01682,184,362 - 82,245,041 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01681,670,460 - 81,729,860 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41681,709,041 - 81,769,680 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11681,694,877 - 81,755,530 (+)NCBI
Celera1674,657,945 - 74,716,595 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:9566969   PMID:12477932   PMID:16025302   PMID:19946888   PMID:21399614  


Genomics

Comparative Map Data
Tubgcp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21676,851,859 - 76,912,499 (+)NCBI
Rnor_6.0 Ensembl1682,184,387 - 82,245,041 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01682,184,362 - 82,245,041 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01681,670,460 - 81,729,860 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41681,709,041 - 81,769,680 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11681,694,877 - 81,755,530 (+)NCBI
Celera1674,657,945 - 74,716,595 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
TUBGCP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl13112,485,011 - 112,588,205 (-)EnsemblGRCh38hg38GRCh38
GRCh3813112,485,005 - 112,606,469 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3713113,139,319 - 113,242,494 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh3713113,139,325 - 113,242,467 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613112,187,326 - 112,290,482 (-)NCBINCBI36hg18NCBI36
Build 3413112,187,328 - 112,290,482NCBI
Celera1393,964,643 - 94,067,798 (-)NCBI
Cytogenetic Map13q34NCBI
HuRef1393,580,931 - 93,683,836 (-)NCBIHuRef
CHM1_113113,105,125 - 113,211,516 (-)NCBICHM1_1
Tubgcp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39812,664,277 - 12,722,141 (-)NCBIGRCm39mm39
GRCm38812,614,277 - 12,672,854 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl812,614,277 - 12,672,248 (-)EnsemblGRCm38mm10GRCm38
MGSCv37812,614,277 - 12,672,100 (-)NCBIGRCm37mm9NCBIm37
MGSCv36812,614,254 - 12,672,077 (-)NCBImm8
Celera812,782,152 - 12,839,981 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
Tubgcp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955404969,027 - 1,031,250 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955404969,027 - 1,027,229 (+)NCBIChiLan1.0ChiLan1.0
TUBGCP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.113112,702,519 - 112,801,429 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13112,702,519 - 112,801,429 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01393,614,417 - 93,716,589 (-)NCBIMhudiblu_PPA_v0panPan3
TUBGCP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2260,161,639 - 60,237,819 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12260,161,219 - 60,237,948 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Tubgcp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936472896,513 - 965,410 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TUBGCP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1178,190,725 - 78,232,252 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11178,190,725 - 78,232,252 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21185,779,310 - 85,820,852 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TUBGCP3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1390,533,743 - 90,627,963 (-)NCBI
ChlSab1.1 Ensembl390,534,728 - 90,627,859 (-)Ensembl
Tubgcp3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247931,066,746 - 1,123,944 (+)NCBI

Position Markers
RH137185  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01682,244,711 - 82,244,891NCBIRnor6.0
Rnor_5.01681,729,530 - 81,729,710UniSTSRnor5.0
RGSC_v3.41681,769,350 - 81,769,530UniSTSRGSC3.4
Celera1674,716,265 - 74,716,445UniSTS
Cytogenetic Map16q12.5UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)16109005486162972Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163900002184000021Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164151271086512710Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164151271086512710Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164655818890668790Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165781635790668790Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165781635790668790Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165781635790668790Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165928577589248943Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:204
Count of miRNA genes:148
Interacting mature miRNAs:180
Transcripts:ENSRNOT00000068416
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 26 39 23 19 23 74 34 36 11
Low 17 18 18 18 8 11 1 5 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC127756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000068416   ⟹   ENSRNOP00000060338
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1682,184,402 - 82,245,041 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089329   ⟹   ENSRNOP00000069236
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1682,184,387 - 82,245,038 (+)Ensembl
RefSeq Acc Id: NM_001107323   ⟹   NP_001100793
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21676,851,859 - 76,912,499 (+)NCBI
Rnor_6.01682,184,402 - 82,245,041 (+)NCBI
Rnor_5.01681,670,460 - 81,729,860 (+)NCBI
RGSC_v3.41681,709,041 - 81,769,680 (+)RGD
Celera1674,657,945 - 74,716,595 (+)RGD
Sequence:
RefSeq Acc Id: XM_006253440   ⟹   XP_006253502
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21676,851,861 - 76,912,495 (+)NCBI
Rnor_6.01682,184,362 - 82,245,037 (+)NCBI
Rnor_5.01681,670,460 - 81,729,860 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006253441   ⟹   XP_006253503
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21676,851,873 - 76,912,495 (+)NCBI
Rnor_6.01682,184,362 - 82,245,037 (+)NCBI
Rnor_5.01681,670,460 - 81,729,860 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001100793 (Get FASTA)   NCBI Sequence Viewer  
  XP_006253502 (Get FASTA)   NCBI Sequence Viewer  
  XP_006253503 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH85356 (Get FASTA)   NCBI Sequence Viewer  
  EDM08853 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001100793   ⟸   NM_001107323
- UniProtKB: D3ZMR7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253502   ⟸   XM_006253440
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JUU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253503   ⟸   XM_006253441
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000069236   ⟸   ENSRNOT00000089329
RefSeq Acc Id: ENSRNOP00000060338   ⟸   ENSRNOT00000068416
Protein Domains
GCP_C_terminal   GCP_N_terminal

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700243
Promoter ID:EPDNEW_R10762
Type:multiple initiation site
Name:Tubgcp3_1
Description:tubulin, gamma complex associated protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01682,184,393 - 82,184,453EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305726 AgrOrtholog
Ensembl Genes ENSRNOG00000017085 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000060338 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000069236 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068416 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000089329 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7132880 IMAGE-MGC_LOAD
InterPro GCP_C UniProtKB/TrEMBL
  GCP_N UniProtKB/TrEMBL
  Spc97_Spc98 UniProtKB/TrEMBL
KEGG Report rno:306599 UniProtKB/TrEMBL
MGC_CLONE MGC:105893 IMAGE-MGC_LOAD
NCBI Gene 306599 ENTREZGENE
PANTHER Spc97_Spc98 UniProtKB/TrEMBL
Pfam GCP_C_terminal UniProtKB/TrEMBL
  GCP_N_terminal UniProtKB/TrEMBL
PhenoGen Tubgcp3 PhenoGen
UniProt A0A0G2JUU7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZMR7 ENTREZGENE, UniProtKB/TrEMBL
  Q5U3X6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Tubgcp3  tubulin, gamma complex associated protein 3  Tubgcp3_predicted  tubulin, gamma complex associated protein 3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Tubgcp3_predicted  tubulin, gamma complex associated protein 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED