Tubgcp3 (tubulin, gamma complex associated protein 3) - Rat Genome Database

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Gene: Tubgcp3 (tubulin, gamma complex associated protein 3) Rattus norvegicus
Analyze
Symbol: Tubgcp3
Name: tubulin, gamma complex associated protein 3
RGD ID: 1305726
Description: Predicted to enable gamma-tubulin binding activity. Predicted to contribute to microtubule minus-end binding activity. Predicted to be involved in meiotic cell cycle; microtubule cytoskeleton organization; and mitotic cell cycle. Predicted to be located in centriole; cytoplasm; and polar microtubule. Predicted to be part of gamma-tubulin small complex. Predicted to be active in centrosome and equatorial microtubule organizing center. Orthologous to human TUBGCP3 (tubulin gamma complex associated protein 3); INTERACTS WITH bisphenol A; flutamide; furan.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: gamma-tubulin complex component 3; LOC306599
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21676,851,859 - 76,912,499 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1676,851,810 - 76,912,499 (+)Ensembl
Rnor_6.01682,184,362 - 82,245,041 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1682,184,387 - 82,245,041 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01681,670,460 - 81,729,860 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41681,709,041 - 81,769,680 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11681,694,877 - 81,755,530 (+)NCBI
Celera1674,657,945 - 74,716,595 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9566969   PMID:12477932   PMID:16025302   PMID:19946888   PMID:21399614  


Genomics

Comparative Map Data
Tubgcp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21676,851,859 - 76,912,499 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1676,851,810 - 76,912,499 (+)Ensembl
Rnor_6.01682,184,362 - 82,245,041 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1682,184,387 - 82,245,041 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01681,670,460 - 81,729,860 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41681,709,041 - 81,769,680 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11681,694,877 - 81,755,530 (+)NCBI
Celera1674,657,945 - 74,716,595 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
TUBGCP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813112,485,011 - 112,605,630 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl13112,485,011 - 112,588,205 (-)EnsemblGRCh38hg38GRCh38
GRCh3713113,139,325 - 113,242,467 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613112,187,326 - 112,290,482 (-)NCBINCBI36hg18NCBI36
Build 3413112,187,328 - 112,290,482NCBI
Celera1393,964,643 - 94,067,798 (-)NCBI
Cytogenetic Map13q34NCBI
HuRef1393,580,931 - 93,683,836 (-)NCBIHuRef
CHM1_113113,105,134 - 113,211,498 (-)NCBICHM1_1
T2T-CHM13v2.013111,732,118 - 111,835,832 (-)NCBI
Tubgcp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39812,664,277 - 12,722,141 (-)NCBIGRCm39mm39
GRCm39 Ensembl812,664,277 - 12,722,248 (-)Ensembl
GRCm38812,614,277 - 12,672,854 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl812,614,277 - 12,672,248 (-)EnsemblGRCm38mm10GRCm38
MGSCv37812,614,277 - 12,672,100 (-)NCBIGRCm37mm9NCBIm37
MGSCv36812,614,254 - 12,672,077 (-)NCBImm8
Celera812,782,152 - 12,839,981 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
Tubgcp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955404969,027 - 1,031,250 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955404969,027 - 1,027,229 (+)NCBIChiLan1.0ChiLan1.0
TUBGCP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.113112,702,519 - 112,801,429 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13112,702,519 - 112,801,429 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01393,614,417 - 93,716,589 (-)NCBIMhudiblu_PPA_v0panPan3
TUBGCP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12260,161,219 - 60,237,948 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2260,161,639 - 60,237,819 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2259,874,057 - 59,950,740 (-)NCBI
ROS_Cfam_1.02260,788,598 - 60,865,382 (-)NCBI
ROS_Cfam_1.0 Ensembl2260,788,636 - 60,865,466 (-)Ensembl
UMICH_Zoey_3.12260,287,612 - 60,364,305 (-)NCBI
UNSW_CanFamBas_1.02260,283,378 - 60,360,083 (-)NCBI
UU_Cfam_GSD_1.02260,317,624 - 60,394,386 (-)NCBI
Tubgcp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945194,986,745 - 195,055,677 (-)NCBI
SpeTri2.0NW_004936472896,513 - 965,410 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TUBGCP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1178,190,729 - 78,232,252 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11178,190,725 - 78,232,252 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21185,779,310 - 85,820,852 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TUBGCP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1390,533,743 - 90,627,963 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl390,534,728 - 90,627,859 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604647,452,720 - 47,547,283 (-)NCBIVero_WHO_p1.0
Tubgcp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247931,066,697 - 1,123,038 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247931,066,746 - 1,123,944 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH137185  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21676,912,168 - 76,912,349 (+)MAPPERmRatBN7.2
Rnor_6.01682,244,711 - 82,244,891NCBIRnor6.0
Rnor_5.01681,729,530 - 81,729,710UniSTSRnor5.0
RGSC_v3.41681,769,350 - 81,769,530UniSTSRGSC3.4
Celera1674,716,265 - 74,716,445UniSTS
Cytogenetic Map16q12.5UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:204
Count of miRNA genes:148
Interacting mature miRNAs:180
Transcripts:ENSRNOT00000068416
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 26 39 23 19 23 74 34 36 11
Low 17 18 18 18 8 11 1 5 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC127756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000068416   ⟹   ENSRNOP00000060338
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1676,851,859 - 76,912,499 (+)Ensembl
Rnor_6.0 Ensembl1682,184,402 - 82,245,041 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089329   ⟹   ENSRNOP00000069236
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1676,851,819 - 76,912,492 (+)Ensembl
Rnor_6.0 Ensembl1682,184,387 - 82,245,038 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106116   ⟹   ENSRNOP00000096649
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1676,851,819 - 76,912,492 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110771   ⟹   ENSRNOP00000096034
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1676,851,810 - 76,912,492 (+)Ensembl
RefSeq Acc Id: NM_001107323   ⟹   NP_001100793
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21676,851,859 - 76,912,499 (+)NCBI
Rnor_6.01682,184,402 - 82,245,041 (+)NCBI
Rnor_5.01681,670,460 - 81,729,860 (+)NCBI
RGSC_v3.41681,709,041 - 81,769,680 (+)RGD
Celera1674,657,945 - 74,716,595 (+)RGD
Sequence:
RefSeq Acc Id: XM_006253440   ⟹   XP_006253502
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21676,851,861 - 76,912,495 (+)NCBI
Rnor_6.01682,184,362 - 82,245,037 (+)NCBI
Rnor_5.01681,670,460 - 81,729,860 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006253441   ⟹   XP_006253503
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21676,851,873 - 76,912,495 (+)NCBI
Rnor_6.01682,184,362 - 82,245,037 (+)NCBI
Rnor_5.01681,670,460 - 81,729,860 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001100793 (Get FASTA)   NCBI Sequence Viewer  
  XP_006253502 (Get FASTA)   NCBI Sequence Viewer  
  XP_006253503 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH85356 (Get FASTA)   NCBI Sequence Viewer  
  EDM08853 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001100793   ⟸   NM_001107323
- Sequence:
RefSeq Acc Id: XP_006253502   ⟸   XM_006253440
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JUU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253503   ⟸   XM_006253441
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000069236   ⟸   ENSRNOT00000089329
RefSeq Acc Id: ENSRNOP00000060338   ⟸   ENSRNOT00000068416
RefSeq Acc Id: ENSRNOP00000096034   ⟸   ENSRNOT00000110771
RefSeq Acc Id: ENSRNOP00000096649   ⟸   ENSRNOT00000106116
Protein Domains
GCP_C_terminal   GCP_N_terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JUU7-F1-model_v2 AlphaFold A0A0G2JUU7 1-902 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700243
Promoter ID:EPDNEW_R10762
Type:multiple initiation site
Name:Tubgcp3_1
Description:tubulin, gamma complex associated protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01682,184,393 - 82,184,453EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305726 AgrOrtholog
BioCyc Gene G2FUF-10691 BioCyc
Ensembl Genes ENSRNOG00000017085 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000060338 ENTREZGENE
  ENSRNOP00000060338.1 UniProtKB/TrEMBL
  ENSRNOP00000069236 ENTREZGENE
  ENSRNOP00000069236.1 UniProtKB/TrEMBL
  ENSRNOP00000096034 ENTREZGENE
  ENSRNOP00000096034.1 UniProtKB/TrEMBL
  ENSRNOP00000096649.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068416 ENTREZGENE
  ENSRNOT00000068416.2 UniProtKB/TrEMBL
  ENSRNOT00000089329 ENTREZGENE
  ENSRNOT00000089329.2 UniProtKB/TrEMBL
  ENSRNOT00000106116.1 UniProtKB/TrEMBL
  ENSRNOT00000110771 ENTREZGENE
  ENSRNOT00000110771.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1900 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7132880 IMAGE-MGC_LOAD
InterPro GCP_C UniProtKB/TrEMBL
  GCP_C_sf UniProtKB/TrEMBL
  GCP_N UniProtKB/TrEMBL
  Spc97_Spc98 UniProtKB/TrEMBL
KEGG Report rno:306599 UniProtKB/TrEMBL
MGC_CLONE MGC:105893 IMAGE-MGC_LOAD
NCBI Gene 306599 ENTREZGENE
PANTHER Spc97_Spc98 UniProtKB/TrEMBL
Pfam GCP_C_terminal UniProtKB/TrEMBL
  GCP_N_terminal UniProtKB/TrEMBL
PhenoGen Tubgcp3 PhenoGen
UniProt A0A0G2JUU7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AUJ2_RAT UniProtKB/TrEMBL
  A0A8I6GLP6_RAT UniProtKB/TrEMBL
  D3ZMR7_RAT UniProtKB/TrEMBL
  Q5U3X6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Tubgcp3  tubulin, gamma complex associated protein 3  Tubgcp3_predicted  tubulin, gamma complex associated protein 3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Tubgcp3_predicted  tubulin, gamma complex associated protein 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED