Tmem62 (transmembrane protein 62)

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Gene: Tmem62 (transmembrane protein 62) Rattus norvegicus

Analyze

Symbol:

Tmem62

Name:

transmembrane protein 62

RGD ID:

1305647

Description:

Predicted to have hydrolase activity. Predicted to localize to integral component of membrane. Orthologous to human TMEM62 (transmembrane protein 62); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; all-trans-retinoic acid.

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

LOC311350; RGD1305647; similar to hypothetical protein FLJ23375

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM62 (transmembrane protein 62)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tmem62 (transmembrane protein 62)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Tmem62 (transmembrane protein 62)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM62 (transmembrane protein 62)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM62 (transmembrane protein 62)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem62 (transmembrane protein 62)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM62 (transmembrane protein 62)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	TMEM62 (transmembrane protein 62)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem62 (transmembrane protein 62)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Tmem62 (transmembrane protein 62)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	TMEM62 (transmembrane protein 62)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	tmem62 (transmembrane protein 62)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	107,921,940 - 107,961,830 (+)	NCBI
Rnor_6.0 Ensembl	3	112,916,217 - 112,949,728 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	112,915,415 - 112,950,418 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	119,459,008 - 119,493,453 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	107,752,430 - 107,786,727 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	107,649,217 - 107,682,580 (+)	NCBI
Celera	3	106,832,043 - 106,866,765 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

crocidolite asbestos (ISO)

cytarabine (ISO)

dichloroacetic acid (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

fipronil (EXP)

flutamide (EXP)

furan (ISO)

leflunomide (EXP)

mono(2-ethylhexyl) phthalate (ISO)

nefazodone (EXP)

nimesulide (EXP)

paracetamol (ISO)

pentachlorophenol (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

propiconazole (ISO)

SB 431542 (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP,ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

integral component of membrane (IEA)

Molecular Function

hydrolase activity (IEA)

References

References - curated


1.	MGD data from the GO Consortium
2.	RGD automated data pipeline
3.	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Tmem62
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	107,921,940 - 107,961,830 (+)	NCBI
Rnor_6.0 Ensembl	3	112,916,217 - 112,949,728 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	112,915,415 - 112,950,418 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	119,459,008 - 119,493,453 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	107,752,430 - 107,786,727 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	107,649,217 - 107,682,580 (+)	NCBI
Celera	3	106,832,043 - 106,866,765 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

TMEM62
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	15	43,123,279 - 43,185,144 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	15	43,133,115 - 43,185,147 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	15	43,425,313 - 43,477,342 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	41,213,014 - 41,264,634 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	15	20,196,546 - 20,248,167 (+)	NCBI
Cytogenetic Map	15	q15.2	NCBI
HuRef	15	20,273,823 - 20,326,137 (+)	NCBI		HuRef
CHM1_1	15	43,544,545 - 43,596,164 (+)	NCBI		CHM1_1

Tmem62
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	120,806,959 - 120,838,324 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	2	120,807,498 - 120,838,333 (+)	Ensembl
GRCm38	2	120,976,478 - 121,007,849 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	120,977,017 - 121,007,852 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	120,802,798 - 120,833,579 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	120,668,503 - 120,699,284 (+)	NCBI			mm8
Celera	2	122,126,497 - 122,157,454 (+)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI

Tmem62
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	9,737,616 - 9,772,738 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955416	9,731,871 - 9,772,738 (+)	NCBI	ChiLan1.0	ChiLan1.0

TMEM62
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	15	40,248,948 - 40,301,280 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	40,248,952 - 40,301,280 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	15	22,091,408 - 22,146,419 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

TMEM62
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	10,007,112 - 10,053,501 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	10,021,868 - 10,052,992 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	10,065,964 - 10,112,867 (+)	NCBI
ROS_Cfam_1.0	30	10,142,626 - 10,189,946 (+)	NCBI
UMICH_Zoey_3.1	30	10,059,859 - 10,106,766 (+)	NCBI
UNSW_CanFamBas_1.0	30	10,180,840 - 10,227,743 (+)	NCBI
UU_Cfam_GSD_1.0	30	10,300,533 - 10,347,490 (+)	NCBI

Tmem62
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_ltri_2	NW_024408640	88,475,190 - 88,517,054 (+)	NCBI
SpeTri2.0	NW_004936471	6,323,196 - 6,365,111 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM62
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	128,269,596 - 128,306,056 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	128,269,590 - 128,306,128 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	143,085,560 - 143,102,893 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM62
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	39,808,067 - 39,851,865 (-)	NCBI
ChlSab1.1 Ensembl	26	39,807,923 - 39,851,611 (-)	Ensembl

Tmem62
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624804	10,225,724 - 10,287,773 (+)	NCBI

Position Markers

RH128774

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	112,949,983 - 112,950,173	NCBI	Rnor6.0
Rnor_5.0	3	119,493,018 - 119,493,208	UniSTS	Rnor5.0
RGSC_v3.4	3	107,786,292 - 107,786,482	UniSTS	RGSC3.4
Celera	3	106,866,330 - 106,866,520	UniSTS
RH 3.4 Map	3	939.9	UniSTS
Cytogenetic Map	3	q35	UniSTS

C77355

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	112,949,939 - 112,950,168	NCBI	Rnor6.0
Rnor_5.0	3	119,492,974 - 119,493,203	UniSTS	Rnor5.0
RGSC_v3.4	3	107,786,248 - 107,786,477	UniSTS	RGSC3.4
Celera	3	106,866,286 - 106,866,515	UniSTS
Cytogenetic Map	3	q35	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	30114912	123700444	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	30846101	172879276	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	39248391	140271184	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	43295930	163640485	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	43295930	163640485	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	45406058	127023997	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	45406058	177699992	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	48561928	155263151	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	48562146	115249962	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	48562146	115249962	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	51821836	124513579	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	51822008	120917851	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	54630948	119830094	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	54630948	119830094	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	54630948	119830094	Rat
1581568	Rf53	Renal function QTL 53			total urine protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	58204463	170534769	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	61241033	165369047	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	62922868	127023997	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	66711607	119830094	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	66711607	119830094	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	72672290	127023997	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	72973445	127023997	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	78700444	123700444	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	total urine protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	81136227	154416635	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	83817637	119509260	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	88910015	133910015	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	94788365	139788365	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	97009185	142009185	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	99465522	168732722	Rat
1582219	Bw63	Body weight QTL 63	3.8	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	3	100730984	119830094	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	101058963	146058963	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	102152812	155263151	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	102466149	147466149	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	103141814	176418101	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	103141814	176418101	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	103141814	176418101	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	103141944	170934860	Rat
1582216	Bw65	Body weight QTL 65	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	106900427	119830094	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	203
Count of miRNA genes:	145
Interacting mature miRNAs:	170
Transcripts:	ENSRNOT00000030065
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3		30	23	12	23			62	17	12	11
Low		43	27	18	7	18	8	11	12	18	29		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_001080922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_230497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005502958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005502959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ210040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000030065 ⟹ ENSRNOP00000032893

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	112,916,217 - 112,949,728 (+)	Ensembl

RefSeq Acc Id:

XM_001080922 ⟹ XP_001080922

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	3	106,832,043 - 106,866,765 (+)	NCBI

Sequence:

show sequence

TTGTGCAACCCAGTGCATTCTCTACAGAGAACAAAAGAGGACCTTGTATTCCCTGGAGCTTGTG
GTTAGAAACCTCTTAATGTAGGTGCTGGAAACCAAACCGATGTTTCCTTATGTTTTCTGTTTAT
ATCAACGGCTTATATTCCAGAGATGTTGAACTAATTGAAATTGGCATAAATTACAACACTGATA
ATATATCCCAAGGAAATAAAGATTGTTTAAAGCACGATTTGTATAAAAATGTTTATTCTTAATA
GCAATGCATAATAAAGAGTTGAAAGCCAACAATGAAGGATTAGGTTTGATAAATTAAGGCTAGG
ACCAGAATCTAATTCTGGAAAAGATTAATTTACAAGCATGCCACAGTGTCACAATACCATATAA
ATGAGTACATTTAAAATCAGATTAAGGAAAAAAGATAATTTCCACGAGATAAGGAATCCTGTGA
GGTTATGTTATTCCAGAAGGAGCCAGAGTGAGCCGCCCGTCACATTTTTACTTTAAGAGGCGTC
CTCATACTCACTTTGATTCTCACCCTACACGCACCCAAGGTATCATTAACTTCGCTTTACAGGT
GCTGAGGTCGCACCACGGTCAGGGATGCCAGACCCTGGAGAAGCCAGGTGGCGTGCTGCCTCCC
TGCCACCCACTCGCTTTGCTCTTCCTGGTCCTCACTACGTTGTCAAACGCCGGGGAGCCGGGCT
GCAGAGGCGCGGAGGCCTGGGCTGAGGCGAGGTGTGGAGGCGGCCGGAGGCCACAGAGGCCGGA
AGTGCGGGCCGGAGCGCTCCGGTGCTGCGCCGCGATGGCGAGAATGCTGGCCGTCCGGGTGGCG
GCGGGGCTGGCGGCCGCCGCGCTGGCCGCCCTGCTTTTGGAGCACTACGGCCTGGCTGGGCCGT
CCACGCCGCTGCCGAAGCCCAGAGGCTCCCAGAGGCCGCACCCCGCCCCGGGCTCAGATGCCAA
CAACATCTTCTGGGGTCTGCAGATATCCGACATTCACCTGAGCAGGTTTCAAGATCCAGGCAGA
GCGTTGGCCTTAGAGAAGTTCTGTTCGGAAACTATTGACATCATTCAACCGGCTCTTGTCCTGG
CCACTGGAGACCTGACAGATGCCAAAACAAAGGAACACTTGGGATCCAGACAACATGAAGTAGA
ATGGCAAACTTACCAGAGAATTCTGAAGAAGACAAGAGTTATGGAAAAAACCAAGTGGCTGGAT
ATCAAAGGAAATCATGATGTATATAACATCCCAAGTCTGGAGAGCATCACCAACTATTACAGGA
AGTACTCCGCGGTGCGCAAGGACGGCTCCTTCCATTACATCCACAGCACTCCTTTCGGCAACTA
CTCCTTCATCTCCGTGGACGCCACCCAAAGGCCAGGGCCTAAGAGACCCTATAATTTCTTCGGG
ATTTTAAATGAGAAACAGATGGAGGAACTCTTATCATTTTCCAAGAAAAGTAGTCAGAGCAACC
AGACCATTTGGTTTGGCCACTTTACAACATCAACGATCCTGTCTCCATCCCCAGGGATCCGGAC
CGTAATGGGTTCGGCTACAGCTTATCTGTGTGGGCACCTCCATACGCTCGGTGGGCTGATGCCC
GTTCTGCACACTCGCCACTTTACAGGCACGCTGGAACTTGAAGTGGGAGACTGGAAAGACAACA
GAAGGTACCGGATCTTTGCCTTTGATCACGACCTCTTTAGCTTTGCAGATGTAACCTTTGACAA
GTGGCCTGTGGCTCTTATCACCAATCCTAAGTCACTCCTCTATAGTTGTGCTAAGCATGAACCA
CTAGAAAGGCTCTTCTATTCCACACACATAAGAGTATTGGCCTTTTCCTTATCCCCCATCACTT
CTGTCACTGTTAAGATTGATGGAGGTGATATAGGCCAGGCTTCTCATTTGTCTGGTCCTATTTT
CATACTGAAGTGGAACCCTAGAAACTACAGTAATGGGACACATACCATAGAAGTATTCGTCCAG
GATTCTGCTGGAAGGAGTACGAGTGCTCGCCACATATTTTCTGCTCAGGAGAATACTCATCTCA
CATTTGACCCTTTGGCATCCTTTATTCTCCTTACTGACCACTACATCGTGGCCCGGGTGCTGTT
TGTGTTGATTGTGCTGATACAGCTCACCGTGCTCATTACATTCAGATATCTAGCATACCCGGAG
CTGAGAGAACCTCTGGGATTTGCAAACATGACCACATTTTCCCTTCATATCTTGAGCAAAATAA
ACATCTCCTACTATTCTGTTTTGTTGCTGACCTTGTATACAGTGCTGGGACCATGGTTTGTTGG
AGAGATAATTGACGGCAAATGGGGTTGCTGCTTTTCATTTGGGATAGTTGTTGATGGACACTTC
CTGCAAGGTGGTCTAACATTTATAAGTGGAATTATACAGCTGGTGTTCTTTAACATCCCCTTGA
CGGCTTACACATGCTGGAGTCTGCTACAGCGCTGCTTTGGTCACAACTTCAGGTCTCATCTCCT
CCAGGGAAGATACGTGCAGATTATTCCTGTTCACCTGCTTATGCTTCTACTGTACACGTGGCAG
GTTTATTCTTGCTACTTCCTTCATGTGACGTATGGCTCCCTCGCCTTTCTACTCTCCCCATTGA
GGACCTGGTTGACATTGCTGACACCTGTACTCGTTTATCGTGTGTGGACACTGAACTCCACTGA
ACTTGGAATATTCATGGTGCAGTTAAAAAGTCATCTGAGCTCCTGAAGTCCATGGCTTACCGCT
AGCGGCCTGGAAGAAGTCCAGCCTCCACATTTGTGGCCCAGATCTCTGCCCCAGTGGCAGATGG
GAAAGCCAGTATCAGTGGGTGAGCTTCAGGAAGCTGTCATTCCTTGGACGTCTGAATGTTGGAA
GTGTTTACTACTGATTCCTGCTGTGTGGACTGCAGAAAAGTCTAACGAATGACTCTTCTTCAGA
GGCAAAGAGCCCTAATCAAGGAGATTGCCAGGGTGGGGTCTCTGTGTCACTGAGTCCCTCAGCA
CTGCTGTATTTATTAAGGGTCATCCTGTGAAAAGCATCCAGCCCAAACTTGGAATTCAGGATGC
CATTTTATGCCTAGGGAACCTGTGGAAAGTGGGCCTTTACCGCTCCTGAGACTTGACTTCCAAG
CCTGTTTTCCCAAGAATTATGGGCTTCCTGCTTCCTTAGTCAAAGCTGTTTTCAACTAATAAAT
GAATGAATGATAACCACAAACATTGGGTTGGAGAGATCAGTGGTTAAGAGCATGTACTTTACCT
CCAGAAGACCTGAGTTCAATTCCTAGCAACCATGTCAGATGCTCACAACTGCCTGTAACTCTAG
TTCCAGGCCAGAGCCACTGTGGACACCTACATTTATATGTGCACAGACTTACACGTAATTTAAA
AAAATAATAAAAGATAAGTATTAACAAAGAAA

hide sequence

RefSeq Acc Id:

XM_039106818 ⟹ XP_038962746

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	107,921,940 - 107,961,830 (+)	NCBI

RefSeq Acc Id:

XM_039106819 ⟹ XP_038962747

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	107,921,940 - 107,961,830 (+)	NCBI

RefSeq Acc Id:

XM_039106820 ⟹ XP_038962748

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	107,927,890 - 107,961,830 (+)	NCBI

RefSeq Acc Id:

XM_039106821 ⟹ XP_038962749

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	107,927,365 - 107,961,830 (+)	NCBI

RefSeq Acc Id:

XM_039106822 ⟹ XP_038962750

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	107,929,851 - 107,961,830 (+)	NCBI

RefSeq Acc Id:

XM_230497 ⟹ XP_230497

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	107,927,638 - 107,961,830 (+)	NCBI
Rnor_6.0	3	112,915,415 - 112,950,418 (+)	NCBI
Rnor_5.0	3	119,459,008 - 119,493,453 (+)	NCBI
RGSC_v3.4	3	107,752,430 - 107,786,727 (+)	RGD

Sequence:

show sequence

TTGTGCAACCCAGTGCATTCTCTACAGAGAACAAAAGAGGACCTTGTATTCCCTGGAGCTTGTG
GTTAGAAACCTCTTAATGTAGGTGCTGGAAACCAAACCGATGTTTCCTTATGTTTTCTGTTTAT
ATCAACGGCTTATATTCCAGAGATGTTGAACTAATTGAAATTGGCATAAATTACAACACTGATA
ATATATCCCAAGGAAATAAAGATTGTTTAAAGCACGATTTGTATAAAAATGTTTATTCTTAATA
GCAATGCATAATAAAGAGTTGAAAGCCAACAATGAAGGATTAGGTTTGATAAATTAAGGCTAGG
ACCAGAATCTAATTCTGGAAAAGATTAATTTACAAGCATGCCACAGTGTCACAATACCATATAA
ATGAGTACATTTAAAATCAGATTAAGGAAAAAAGATAATTTCCACGAGATAAGGAATCCTGTGA
GGTTATGTTATTCCAGAAGGAGCCAGAGTGAGCCGCCCGTCACATTTTTACTTTAAGAGGCGTC
CTCATACTCACTTTGATTCTCACCCTACACGCACCCAAGGTATCATTAACTTCGCTTTACAGGT
GCTGAGGTCGCACCACGGTCAGGGATGCCAGACCCTGGAGAAGCCAGGTGGCGTGCTGCCTCCC
TGCCACCCACTCGCTTTGCTCTTCCTGGTCCTCACTACGTTGTCAAACGCCGGGGAGCCGGGCT
GCAGAGGCGCGGAGGCCTGGGCTGAGGCGAGGTGTGGAGGCGGCCGGAGGCCACAGAGGCCGGA
AGTGCGGGCCGGAGCGCTCCGGTGCTGCGCCGCGATGGCGAGAATGCTGGCCGTCCGGGTGGCG
GCGGGGCTGGCGGCCGCCGCGCTGGCCGCCCTGCTTTTGGAGCACTACGGCCTGGCTGGGCCGT
CCACGCCGCTGCCGAAGCCCAGAGGCTCCCAGAGGCCGCACCCCGCCCCGGGCTCAGATGCCAA
CAACATCTTCTGGGGTCTGCAGATATCCGACATTCACCTGAGCAGGTTTCAAGATCCAGGCAGA
GCGTTGGCCTTAGAGAAGTTCTGTTCGGAAACTATTGACATCATTCAACCGGCTCTTGTCCTGG
CCACTGGAGACCTGACAGATGCCAAAACAAAGGAACACTTGGGATCCAGACAACATGAAGTAGA
ATGGCAAACTTACCAGAGAATTCTGAAGAAGACAAGAGTTATGGAAAAAACCAAGTGGCTGGAT
ATCAAAGGAAATCATGATGTATATAACATCCCAAGTCTGGAGAGCATCACCAACTATTACAGGA
AGTACTCCGCGGTGCGCAAGGACGGCTCCTTCCATTACATCCACAGCACTCCTTTCGGCAACTA
CTCCTTCATCTCCGTGGACGCCACCCAAAGGCCAGGGCCTAAGAGACCCTATAATTTCTTCGGG
ATTTTAAATGAGAAACAGATGGAGGAACTCTTATCATTTTCCAAGAAAAGTAGTCAGAGCAACC
AGACCATTTGGTTTGGCCACTTTACAACATCAACGATCCTGTCTCCATCCCCAGGGATCCGGAC
CGTAATGGGTTCGGCTACAGCTTATCTGTGTGGGCACCTCCATACGCTCGGTGGGCTGATGCCC
GTTCTGCACACTCGCCACTTTACAGGCACGCTGGAACTTGAAGTGGGAGACTGGAAAGACAACA
GAAGGTACCGGATCTTTGCCTTTGATCACGACCTCTTTAGCTTTGCAGATGTAACCTTTGACAA
GTGGCCTGTGGCTCTTATCACCAATCCTAAGTCACTCCTCTATAGTTGTGCTAAGCATGAACCA
CTAGAAAGGCTCTTCTATTCCACACACATAAGAGTATTGGCCTTTTCCTTATCCCCCATCACTT
CTGTCACTGTTAAGATTGATGGAGGTGATATAGGCCAGGCTTCTCATTTGTCTGGTCCTATTTT
CATACTGAAGTGGAACCCTAGAAACTACAGTAATGGGACACATACCATAGAAGTATTCGTCCAG
GATTCTGCTGGAAGGAGTACGAGTGCTCGCCACATATTTTCTGCTCAGGAGAATACTCATCTCA
CATTTGACCCTTTGGCATCCTTTATTCTCCTTACTGACCACTACATCGTGGCCCGGGTGCTGTT
TGTGTTGATTGTGCTGATACAGCTCACCGTGCTCATTACATTCAGATATCTAGCATACCCGGAG
CTGAGAGAACCTCTGGGATTTGCAAACATGACCACATTTTCCCTTCATATCTTGAGCAAAATAA
ACATCTCCTACTATTCTGTTTTGTTGCTGACCTTGTATACAGTGCTGGGACCATGGTTTGTTGG
AGAGATAATTGACGGCAAATGGGGTTGCTGCTTTTCATTTGGGATAGTTGTTGATGGACACTTC
CTGCAAGGTGGTCTAACATTTATAAGTGGAATTATACAGCTGGTGTTCTTTAACATCCCCTTGA
CGGCTTACACATGCTGGAGTCTGCTACAGCGCTGCTTTGGTCACAACTTCAGGTCTCATCTCCT
CCAGGGAAGATACGTGCAGATTATTCCTGTTCACCTGCTTATGCTTCTACTGTACACGTGGCAG
GTTTATTCTTGCTACTTCCTTCATGTGACGTATGGCTCCCTCGCCTTTCTACTCTCCCCATTGA
GGACCTGGTTGACATTGCTGACACCTGTACTCGTTTATCGTGTGTGGACACTGAACTCCACTGA
ACTTGGAATATTCATGGTGCAGTTAAAAAGTCATCTGAGCTCCTGAAGTCCATGGCTTACCGCT
AGCGGCCTGGAAGAAGTCCAGCCTCCACATTTGTGGCCCAGATCTCTGCCCCAGTGGCAGATGG
GAAAGCCAGTATCAGTGGGTGAGCTTCAGGAAGCTGTCATTCCTTGGACGTCTGAATGTTGGAA
GTGTTTACTACTGATTCCTGCTGTGTGGACTGCAGAAAAGTCTAACGAATGACTCTTCTTCAGA
GGCAAAGAGCCCTAATCAAGGAGATTGCCAGGGTGGGGTCTCTGTGTCACTGAGTCCCTCAGCA
CTGCTGTATTTATTAAGGGTCATCCTGTGAAAAGCATCCAGCCCAAACTTGGAATTCAGGATGC
CATTTTATGCCTAGGGAACCTGTGGAAAGTGGGCCTTTACCGCTCCTGAGACTTGACTTCCAAG
CCTGTTTTCCCAAGAATTATGGGCTTCCTGCTTCCTTAGTCAAAGCTGTTTTCAACTAATAAAT
GAATGAATGATAACCACAAACATTGGGTTGGAGAGATCAGTGGTTAAGAGCATGTACTTTACCT
CCAGAAGACCTGAGTTCAATTCCTAGCAACCATGTCAGATGCTCACAACTGCCTGTAACTCTAG
TTCCAGGCCAGAGCCACTGTGGACACCTACATTTATATGTGCACAGACTTACACGTAATTTAAA
AAAATAATAAAAGATAAGTATTAACAAAGAAA

hide sequence

RefSeq Acc Id:

XR_005502958

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	107,921,940 - 107,955,415 (+)	NCBI

RefSeq Acc Id:

XR_005502959

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	107,921,940 - 107,958,813 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_038962746	(Get FASTA)	NCBI Sequence Viewer
	XP_038962747	(Get FASTA)	NCBI Sequence Viewer
	XP_038962748	(Get FASTA)	NCBI Sequence Viewer
	XP_038962749	(Get FASTA)	NCBI Sequence Viewer
	XP_038962750	(Get FASTA)	NCBI Sequence Viewer
	XP_230497	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL79967	(Get FASTA)	NCBI Sequence Viewer
	EDL79968	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_001080922 ⟸ XM_001080922

- Sequence:

show sequence

MARMLAVRVAAGLAAAALAALLLEHYGLAGPSTPLPKPRGSQRPHPAPGSDANNIFWGLQISDI
HLSRFQDPGRALALEKFCSETIDIIQPALVLATGDLTDAKTKEHLGSRQHEVEWQTYQRILKKT
RVMEKTKWLDIKGNHDVYNIPSLESITNYYRKYSAVRKDGSFHYIHSTPFGNYSFISVDATQRP
GPKRPYNFFGILNEKQMEELLSFSKKSSQSNQTIWFGHFTTSTILSPSPGIRTVMGSATAYLCG
HLHTLGGLMPVLHTRHFTGTLELEVGDWKDNRRYRIFAFDHDLFSFADVTFDKWPVALITNPKS
LLYSCAKHEPLERLFYSTHIRVLAFSLSPITSVTVKIDGGDIGQASHLSGPIFILKWNPRNYSN
GTHTIEVFVQDSAGRSTSARHIFSAQENTHLTFDPLASFILLTDHYIVARVLFVLIVLIQLTVL
ITFRYLAYPELREPLGFANMTTFSLHILSKINISYYSVLLLTLYTVLGPWFVGEIIDGKWGCCF
SFGIVVDGHFLQGGLTFISGIIQLVFFNIPLTAYTCWSLLQRCFGHNFRSHLLQGRYVQIIPVH
LLMLLLYTWQVYSCYFLHVTYGSLAFLLSPLRTWLTLLTPVLVYRVWTLNSTELGIFMVQLKSH
LSS

hide sequence

RefSeq Acc Id:	XP_230497 ⟸ XM_230497
- Peptide Label:	isoform X1
- UniProtKB:	D3ZIW4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARMLAVRVAAGLAAAALAALLLEHYGLAGPSTPLPKPRGSQRPHPAPGSDANNIFWGLQISDI HLSRFQDPGRALALEKFCSETIDIIQPALVLATGDLTDAKTKEHLGSRQHEVEWQTYQRILKKT RVMEKTKWLDIKGNHDVYNIPSLESITNYYRKYSAVRKDGSFHYIHSTPFGNYSFISVDATQRP GPKRPYNFFGILNEKQMEELLSFSKKSSQSNQTIWFGHFTTSTILSPSPGIRTVMGSATAYLCG HLHTLGGLMPVLHTRHFTGTLELEVGDWKDNRRYRIFAFDHDLFSFADVTFDKWPVALITNPKS LLYSCAKHEPLERLFYSTHIRVLAFSLSPITSVTVKIDGGDIGQASHLSGPIFILKWNPRNYSN GTHTIEVFVQDSAGRSTSARHIFSAQENTHLTFDPLASFILLTDHYIVARVLFVLIVLIQLTVL ITFRYLAYPELREPLGFANMTTFSLHILSKINISYYSVLLLTLYTVLGPWFVGEIIDGKWGCCF SFGIVVDGHFLQGGLTFISGIIQLVFFNIPLTAYTCWSLLQRCFGHNFRSHLLQGRYVQIIPVH LLMLLLYTWQVYSCYFLHVTYGSLAFLLSPLRTWLTLLTPVLVYRVWTLNSTELGIFMVQLKSH LSS hide sequence

RefSeq Acc Id:

ENSRNOP00000032893 ⟸ ENSRNOT00000030065

RefSeq Acc Id:	XP_038962746 ⟸ XM_039106818
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038962747 ⟸ XM_039106819
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038962749 ⟸ XM_039106821
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038962748 ⟸ XM_039106820
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038962750 ⟸ XM_039106822
- Peptide Label:	isoform X5

Protein Domains

Metallophos

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692352

Promoter ID:

EPDNEW_R2874

Type:

multiple initiation site

Name:

Tmem62_1

Description:

transmembrane protein 62

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	112,916,203 - 112,916,263	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305647	AgrOrtholog
Ensembl Genes	ENSRNOG00000023874	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000032893	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000030065	UniProtKB/TrEMBL
Gene3D-CATH	3.60.21.10	UniProtKB/TrEMBL
InterPro	Calcineurin-like_PHP_apaH	UniProtKB/TrEMBL
	Metallo-depent_PP-like	UniProtKB/TrEMBL
	MPP_TMEM62	UniProtKB/TrEMBL
KEGG Report	rno:311350	UniProtKB/TrEMBL
NCBI Gene	311350	ENTREZGENE
Pfam	Metallophos	UniProtKB/TrEMBL
PhenoGen	Tmem62	PhenoGen
UniProt	D3ZIW4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Tmem62	transmembrane protein 62	RGD1305647_predicted	similar to hypothetical protein FLJ23375 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1305647_predicted	similar to hypothetical protein FLJ23375 (predicted)	LOC311350_predicted	similar to hypothetical protein FLJ23375 (predicted)	Symbol and Name status set to approved	1331353	APPROVED
2005-01-20	RGD1305647_predicted	similar to hypothetical protein FLJ23375 (predicted)	LOC311350_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC311350_predicted	similar to hypothetical protein FLJ23375 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)