Senp7 (SUMO specific peptidase 7) - Rat Genome Database

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Gene: Senp7 (SUMO specific peptidase 7) Rattus norvegicus
Analyze
Symbol: Senp7
Name: SUMO specific peptidase 7
RGD ID: 1305510
Description: Predicted to enable SUMO-specific endopeptidase activity. Predicted to be involved in antiviral innate immune response and protein desumoylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human SENP7 (SUMO specific peptidase 7); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC288167; sentrin-specific protease 7; sentrin/SUMO-specific protease SENP7; SUMO-1-specific protease 2; SUMO1/sentrin specific peptidase 7; SUMO1/sentrin specific protease 7; Sumo1/sentrin/SMT3 specific peptidase 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21144,423,735 - 44,584,129 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1144,423,735 - 44,564,711 (-)Ensembl
Rnor_6.01146,880,928 - 47,047,052 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1146,880,928 - 47,027,667 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01150,062,235 - 50,210,519 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41145,390,458 - 45,539,624 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11145,448,065 - 45,596,923 (-)NCBI
Celera1144,175,376 - 44,315,364 (-)NCBICelera
Cytogenetic Map11q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,ISO,ISS)
nucleus  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Senp7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21144,423,735 - 44,584,129 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1144,423,735 - 44,564,711 (-)Ensembl
Rnor_6.01146,880,928 - 47,047,052 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1146,880,928 - 47,027,667 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01150,062,235 - 50,210,519 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41145,390,458 - 45,539,624 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11145,448,065 - 45,596,923 (-)NCBI
Celera1144,175,376 - 44,315,364 (-)NCBICelera
Cytogenetic Map11q12NCBI
SENP7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383101,324,205 - 101,513,212 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl3101,324,205 - 101,513,241 (-)EnsemblGRCh38hg38GRCh38
GRCh373101,043,049 - 101,232,056 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363102,525,807 - 102,714,775 (-)NCBINCBI36hg18NCBI36
Build 343102,525,811 - 102,714,775NCBI
Celera399,434,719 - 99,624,210 (-)NCBI
Cytogenetic Map3q12.3NCBI
HuRef398,411,695 - 98,600,626 (-)NCBIHuRef
CHM1_13101,006,076 - 101,195,158 (-)NCBICHM1_1
T2T-CHM13v2.03104,030,073 - 104,219,481 (-)NCBI
Senp7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391655,869,306 - 56,010,394 (+)NCBIGRCm39mm39
GRCm39 Ensembl1655,868,701 - 56,010,375 (+)Ensembl
GRCm381656,057,526 - 56,190,031 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1656,048,338 - 56,190,012 (+)EnsemblGRCm38mm10GRCm38
MGSCv371656,075,522 - 56,190,124 (+)NCBIGRCm37mm9NCBIm37
MGSCv361656,000,360 - 56,114,962 (+)NCBImm8
Celera1656,384,282 - 56,499,373 (+)NCBICelera
Cytogenetic Map16C1.1NCBI
Senp7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554272,924,108 - 3,092,020 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554272,925,159 - 3,091,932 (-)NCBIChiLan1.0ChiLan1.0
SENP7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13105,101,733 - 105,302,921 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3105,103,473 - 105,283,838 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0398,422,018 - 98,623,832 (-)NCBIMhudiblu_PPA_v0panPan3
SENP7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1337,787,910 - 7,927,679 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl337,787,910 - 7,927,550 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha337,942,370 - 8,082,059 (-)NCBI
ROS_Cfam_1.0337,926,759 - 8,066,944 (-)NCBI
ROS_Cfam_1.0 Ensembl337,926,788 - 8,066,929 (-)Ensembl
UMICH_Zoey_3.1337,815,014 - 7,954,343 (-)NCBI
UNSW_CanFamBas_1.0337,860,814 - 8,000,503 (-)NCBI
UU_Cfam_GSD_1.0338,200,385 - 8,340,979 (-)NCBI
Senp7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602148,942,864 - 149,080,606 (+)NCBI
SpeTri2.0NW_0049366301,840,761 - 1,978,500 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SENP7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13157,521,781 - 157,672,818 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113157,521,778 - 157,672,818 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213166,985,019 - 167,153,326 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SENP7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12279,372,335 - 79,557,319 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2279,462,837 - 79,557,871 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604186,999,541 - 87,191,689 (-)NCBIVero_WHO_p1.0
Senp7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478915,182,645 - 15,397,045 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462478915,182,709 - 15,397,642 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D11Got40  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21144,476,528 - 44,476,674 (+)MAPPERmRatBN7.2
Rnor_6.01146,932,957 - 46,933,104NCBIRnor6.0
Rnor_5.01150,114,262 - 50,114,409UniSTSRnor5.0
RGSC_v3.41145,443,816 - 45,443,962RGDRGSC3.4
RGSC_v3.41145,443,817 - 45,443,964UniSTSRGSC3.4
RGSC_v3.11145,501,405 - 45,501,551RGD
Celera1144,228,212 - 44,228,360UniSTS
RH 3.4 Map11339.9UniSTS
RH 3.4 Map11339.9RGD
RH 2.0 Map11280.1RGD
Cytogenetic Map11q12UniSTS
RH131361  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21144,423,941 - 44,424,121 (+)MAPPERmRatBN7.2
Rnor_6.01146,881,135 - 46,881,314NCBIRnor6.0
Rnor_5.01150,062,442 - 50,062,621UniSTSRnor5.0
RGSC_v3.41145,390,665 - 45,390,844UniSTSRGSC3.4
Celera1144,175,583 - 44,175,762UniSTS
RH 3.4 Map11320.0UniSTS
Cytogenetic Map11q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:213
Count of miRNA genes:143
Interacting mature miRNAs:173
Transcripts:ENSRNOT00000044177
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 20 22 6 19 6 2 2 74 27 35 11 2
Low 3 23 35 35 35 6 9 8 6 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000044177   ⟹   ENSRNOP00000043376
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1144,423,735 - 44,564,711 (-)Ensembl
Rnor_6.0 Ensembl1146,880,928 - 47,027,667 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106202   ⟹   ENSRNOP00000084584
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1144,423,748 - 44,564,673 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113252   ⟹   ENSRNOP00000083696
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1144,423,748 - 44,558,462 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114384   ⟹   ENSRNOP00000080672
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1144,423,748 - 44,551,379 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117624   ⟹   ENSRNOP00000082802
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1144,423,748 - 44,564,673 (-)Ensembl
RefSeq Acc Id: NM_001105888   ⟹   NP_001099358
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21144,423,735 - 44,564,711 (-)NCBI
Rnor_6.01146,880,928 - 47,027,667 (-)NCBI
Rnor_5.01150,062,235 - 50,210,519 (-)NCBI
RGSC_v3.41145,390,458 - 45,539,624 (-)RGD
Celera1144,175,376 - 44,315,364 (-)RGD
Sequence:
RefSeq Acc Id: XM_006248244   ⟹   XP_006248306
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21144,423,748 - 44,584,129 (-)NCBI
Rnor_6.01146,880,941 - 47,047,052 (-)NCBI
Rnor_5.01150,062,235 - 50,210,519 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248247   ⟹   XP_006248309
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21144,423,748 - 44,564,723 (-)NCBI
Rnor_6.01146,880,941 - 47,027,683 (-)NCBI
Rnor_5.01150,062,235 - 50,210,519 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248248   ⟹   XP_006248310
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21144,423,748 - 44,564,723 (-)NCBI
Rnor_6.01146,880,941 - 47,027,683 (-)NCBI
Rnor_5.01150,062,235 - 50,210,519 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597931   ⟹   XP_017453420
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21144,423,748 - 44,564,723 (-)NCBI
Rnor_6.01146,880,941 - 47,027,683 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088191   ⟹   XP_038944119
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21144,423,748 - 44,570,359 (-)NCBI
RefSeq Acc Id: XM_039088192   ⟹   XP_038944120
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21144,423,748 - 44,569,615 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001099358   ⟸   NM_001105888
- UniProtKB: D3ZF42 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006248310   ⟸   XM_006248248
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006248309   ⟸   XM_006248247
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006248306   ⟸   XM_006248244
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017453420   ⟸   XM_017597931
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000043376   ⟸   ENSRNOT00000044177
RefSeq Acc Id: XP_038944119   ⟸   XM_039088191
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944120   ⟸   XM_039088192
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000083696   ⟸   ENSRNOT00000113252
RefSeq Acc Id: ENSRNOP00000084584   ⟸   ENSRNOT00000106202
RefSeq Acc Id: ENSRNOP00000080672   ⟸   ENSRNOT00000114384
RefSeq Acc Id: ENSRNOP00000082802   ⟸   ENSRNOT00000117624

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZF42-F1-model_v2 AlphaFold D3ZF42 1-1037 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698112
Promoter ID:EPDNEW_R8637
Type:initiation region
Name:Senp7_1
Description:SUMO1/sentrin specific peptidase 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01147,027,607 - 47,027,667EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305510 AgrOrtholog
BioCyc Gene G2FUF-21519 BioCyc
Ensembl Genes ENSRNOG00000001616 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000043376 ENTREZGENE
  ENSRNOP00000080672.1 UniProtKB/TrEMBL
  ENSRNOP00000082802 ENTREZGENE
  ENSRNOP00000082802.1 UniProtKB/TrEMBL
  ENSRNOP00000083696 ENTREZGENE
  ENSRNOP00000083696.1 UniProtKB/TrEMBL
  ENSRNOP00000084584 ENTREZGENE
  ENSRNOP00000084584.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000044177 ENTREZGENE
  ENSRNOT00000106202 ENTREZGENE
  ENSRNOT00000106202.1 UniProtKB/TrEMBL
  ENSRNOT00000113252 ENTREZGENE
  ENSRNOT00000113252.1 UniProtKB/TrEMBL
  ENSRNOT00000114384.1 UniProtKB/TrEMBL
  ENSRNOT00000117624 ENTREZGENE
  ENSRNOT00000117624.1 UniProtKB/TrEMBL
InterPro Papain-like_cys_pep_sf UniProtKB/Swiss-Prot
  Peptidase_C48_C UniProtKB/Swiss-Prot
KEGG Report rno:288167 UniProtKB/Swiss-Prot
NCBI Gene 288167 ENTREZGENE
Pfam Peptidase_C48 UniProtKB/Swiss-Prot
PhenoGen Senp7 PhenoGen
PROSITE ULP_PROTEASE UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54001 UniProtKB/Swiss-Prot
UniProt A0A8I5ZQB4_RAT UniProtKB/TrEMBL
  A0A8I5ZVM4_RAT UniProtKB/TrEMBL
  A0A8I5ZZN8_RAT UniProtKB/TrEMBL
  A0A8I5ZZQ8_RAT UniProtKB/TrEMBL
  D3ZF42 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-03-01 Senp7  SUMO specific peptidase 7  Senp7  SUMO1/sentrin specific peptidase 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-05 Senp7  SUMO1/sentrin specific peptidase 7  Senp7  Sumo1/sentrin/SMT3 specific peptidase 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-12-15 Senp7  Sumo1/sentrin/Smt3 specific peptidase 7  Senp7  SUMO1/sentrin specific protease 7   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-12-15 Senp7  Sumo1/sentrin/SMT3 specific peptidase 7  Senp7  Sumo1/sentrin/Smt3 specific peptidase 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Senp7  SUMO1/sentrin specific protease 7   Senp7_predicted  SUMO1/sentrin specific protease 7 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Senp7_predicted  SUMO1/sentrin specific protease 7 (predicted)      Symbol and Name status set to approved 70820 APPROVED