Cellular Component Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | plasma membrane | located_in | IEA | UniProtKB-SubCell:SL-0039 | 1600115 | GO_REF:0000044 | UniProt | GO_REF:0000044 | |
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Cellular Component Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | plasma membrane | located_in | IEA | UniProtKB-SubCell:SL-0039 | 1600115 | GO_REF:0000044 | UniProt | GO_REF:0000044 | |
# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
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Variants in Trem3
140 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 4 | 3 | 6 | ||||||||||
Low | 2 | 5 | 29 | 17 | 16 | 17 | 1 | 1 | 23 | 4 | 5 | 1 | |
Below cutoff | 1 | 18 | 22 | 22 | 22 | 6 | 7 | 12 | 6 | 20 | 6 |
RefSeq Acc Id: | ENSRNOT00000018500 ⟹ ENSRNOP00000018500 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001191581 ⟹ NP_001178510 | ||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_017596546 ⟹ XP_017452035 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039083952 ⟹ XP_038939880 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Protein RefSeqs | NP_001178510 | (Get FASTA) | NCBI Sequence Viewer |
XP_017452035 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038939880 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDM18918 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSRNOP00000018500.5 |
RefSeq Acc Id: | NP_001178510 ⟸ NM_001191581 |
- Peptide Label: | precursor |
- UniProtKB: | A6JIG4 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017452035 ⟸ XM_017596546 |
- Peptide Label: | isoform X2 |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000018500 ⟸ ENSRNOT00000018500 |
RefSeq Acc Id: | XP_038939880 ⟸ XM_039083952 |
- Peptide Label: | isoform X1 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D3ZJA7-F1-model_v2 | AlphaFold | D3ZJA7 | 1-185 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1305477 | AgrOrtholog |
BioCyc Gene | G2FUF-28297 | BioCyc |
Ensembl Genes | ENSRNOG00000013748 | Ensembl, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000018500.5 | UniProtKB/TrEMBL |
Gene3D-CATH | 2.60.40.10 | UniProtKB/TrEMBL |
InterPro | Ig-like_dom_sf | UniProtKB/TrEMBL |
Ig-like_fold | UniProtKB/TrEMBL | |
Ig_V-set | UniProtKB/TrEMBL | |
KEGG Report | rno:367215 | UniProtKB/TrEMBL |
NCBI Gene | 367215 | ENTREZGENE |
PANTHER | TRIGGERING RECEPTOR EXPRESSED ON MYELOID CELLS 1 | UniProtKB/TrEMBL |
TRIGGERING RECEPTOR EXPRESSED ON MYELOID CELLS 1 | UniProtKB/TrEMBL | |
Pfam | V-set | UniProtKB/TrEMBL |
PhenoGen | Trem3 | PhenoGen |
RatGTEx | ENSRNOG00000013748 | RatGTEx |
Superfamily-SCOP | SSF48726 | UniProtKB/TrEMBL |
UniProt | A6JIG4 | ENTREZGENE, UniProtKB/TrEMBL |
D3ZJA7_RAT | UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2008-03-06 | Trem3 | triggering receptor expressed on myeloid cells 3 | RGD1305477_predicted | similar to TREM-3 (predicted) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-01-20 | RGD1305477_predicted | similar to TREM-3 (predicted) | LOC367215_predicted | Symbol and Name status set to approved | 1331353 | APPROVED | |
2005-01-12 | LOC367215_predicted | similar to TREM-3 (predicted) | Symbol and Name status set to provisional | 70820 | PROVISIONAL |