Map4k4 (mitogen-activated protein kinase kinase kinase kinase 4) - Rat Genome Database

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Gene: Map4k4 (mitogen-activated protein kinase kinase kinase kinase 4) Rattus norvegicus
Analyze
Symbol: Map4k4
Name: mitogen-activated protein kinase kinase kinase kinase 4
RGD ID: 1305322
Description: Predicted to enable ATP binding activity; kinase activity; and microtubule binding activity. Involved in negative regulation of insulin secretion involved in cellular response to glucose stimulus and negative regulation of neuron projection regeneration. Predicted to be located in focal adhesion. Predicted to be active in cytoplasm. Orthologous to human MAP4K4 (mitogen-activated protein kinase kinase kinase kinase 4); PARTICIPATES IN ceramide signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; tumor necrosis factor mediated signaling pathway; INTERACTS WITH (+)-schisandrin B; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC301363
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2942,200,708 - 42,326,708 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl942,200,278 - 42,326,698 (+)Ensembl
Rnor_6.0946,657,444 - 46,782,545 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl946,657,575 - 46,782,545 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0946,342,983 - 46,469,618 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4939,087,924 - 39,213,053 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1939,072,258 - 39,212,860 (+)NCBI
Celera939,949,780 - 40,073,740 (+)NCBICelera
Cytogenetic Map9q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-demecolcine  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acetylsalicylic acid  (ISO)
aconitine  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
amphetamine  (EXP)
antirheumatic drug  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
bucladesine  (ISO)
captan  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
cerium trichloride  (ISO)
chloroprene  (EXP)
choline  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dibenz[a,h]anthracene  (ISO)
dibenzo[a,l]pyrene  (ISO)
diclofenac  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
furan  (EXP)
gallic acid  (ISO)
gamma-hexachlorocyclohexane  (EXP)
hexadecanoic acid  (ISO)
indole-3-methanol  (EXP)
indometacin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
medroxyprogesterone acetate  (ISO)
menadione  (ISO)
mercury dibromide  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nitrates  (EXP)
ochratoxin A  (ISO)
oleic acid  (ISO)
orphenadrine  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
sertraline  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulfates  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
tributylstannane  (ISO)
trichostatin A  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (EXP,ISO)
vanadium atom  (ISO)
vanadium(0)  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vorinostat  (ISO)

References

Additional References at PubMed
PMID:9135144   PMID:9890973   PMID:14966141   PMID:21196414   PMID:22797597   PMID:23207904   PMID:24163766   PMID:25490267   PMID:25601402   PMID:25931508   PMID:26296893  


Genomics

Comparative Map Data
Map4k4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2942,200,708 - 42,326,708 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl942,200,278 - 42,326,698 (+)Ensembl
Rnor_6.0946,657,444 - 46,782,545 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl946,657,575 - 46,782,545 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0946,342,983 - 46,469,618 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4939,087,924 - 39,213,053 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1939,072,258 - 39,212,860 (+)NCBI
Celera939,949,780 - 40,073,740 (+)NCBICelera
Cytogenetic Map9q22NCBI
MAP4K4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2101,696,850 - 101,894,689 (+)EnsemblGRCh38hg38GRCh38
GRCh382101,697,707 - 101,894,690 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372102,314,169 - 102,511,152 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362101,680,920 - 101,877,584 (+)NCBINCBI36hg18NCBI36
Build 342101,773,005 - 101,969,669NCBI
Celera296,515,852 - 96,712,368 (+)NCBI
Cytogenetic Map2q11.2NCBI
HuRef296,077,883 - 96,275,019 (+)NCBIHuRef
CHM1_12102,318,538 - 102,515,492 (+)NCBICHM1_1
Map4k4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39139,939,806 - 40,065,470 (+)NCBIGRCm39mm39
GRCm39 Ensembl139,940,073 - 40,065,470 (+)Ensembl
GRCm38139,900,902 - 40,026,310 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl139,900,913 - 40,026,310 (+)EnsemblGRCm38mm10GRCm38
MGSCv37139,957,758 - 40,083,155 (+)NCBIGRCm37mm9NCBIm37
MGSCv36139,845,776 - 39,969,471 (+)NCBImm8
Celera139,697,172 - 39,822,126 (+)NCBICelera
Cytogenetic Map1BNCBI
Map4k4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554707,333,351 - 7,470,751 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554707,334,050 - 7,470,751 (+)NCBIChiLan1.0ChiLan1.0
MAP4K4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A102,752,617 - 102,945,263 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A102,750,221 - 102,945,263 (+)Ensemblpanpan1.1panPan2
MAP4K4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11041,088,020 - 41,276,801 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1041,089,371 - 41,276,891 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1041,011,441 - 41,202,508 (-)NCBI
ROS_Cfam_1.01041,953,205 - 42,144,746 (-)NCBI
UMICH_Zoey_3.11041,668,761 - 41,859,816 (-)NCBI
UNSW_CanFamBas_1.01041,948,929 - 42,139,431 (-)NCBI
UU_Cfam_GSD_1.01042,140,514 - 42,331,820 (-)NCBI
Map4k4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629290,518,662 - 90,617,516 (-)NCBI
SpeTri2.0NW_004936713515,388 - 616,024 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAP4K4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl352,484,274 - 52,649,410 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1352,483,028 - 52,649,480 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2355,031,486 - 55,196,190 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MAP4K4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1145,391,416 - 5,579,163 (+)NCBI
ChlSab1.1 Ensembl145,391,449 - 5,583,916 (+)Ensembl
Vero_WHO_p1.0NW_023666041173,068,911 - 173,261,800 (+)NCBI
Map4k4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247496,332,686 - 6,495,942 (+)NCBI

Position Markers
AU045934  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2942,325,036 - 42,325,161 (+)MAPPERmRatBN7.2
Rnor_6.0946,780,884 - 46,781,008NCBIRnor6.0
Rnor_5.0946,466,256 - 46,466,380UniSTSRnor5.0
RGSC_v3.4939,211,392 - 39,211,516UniSTSRGSC3.4
Celera940,072,079 - 40,072,203UniSTS
Cytogenetic Map9q21UniSTS
RH129992  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2942,199,641 - 42,199,859 (+)MAPPERmRatBN7.2
Rnor_6.0946,655,944 - 46,656,161NCBIRnor6.0
Rnor_5.0946,341,490 - 46,341,707UniSTSRnor5.0
RGSC_v3.4939,085,946 - 39,086,163UniSTSRGSC3.4
Celera939,947,777 - 39,947,994UniSTS
RH 3.4 Map9393.09UniSTS
Cytogenetic Map9q21UniSTS
RH132131  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2942,300,637 - 42,300,823 (+)MAPPERmRatBN7.2
Rnor_6.0946,756,485 - 46,756,670NCBIRnor6.0
Rnor_5.0946,441,857 - 46,442,042UniSTSRnor5.0
RGSC_v3.4939,186,974 - 39,187,159UniSTSRGSC3.4
Celera940,047,603 - 40,047,788UniSTS
RH 3.4 Map9389.5UniSTS
Cytogenetic Map9q21UniSTS
AI454038  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2942,318,214 - 42,318,401 (+)MAPPERmRatBN7.2
Rnor_6.0946,774,062 - 46,774,248NCBIRnor6.0
Rnor_5.0946,459,434 - 46,459,620UniSTSRnor5.0
RGSC_v3.4939,204,570 - 39,204,756UniSTSRGSC3.4
Celera940,065,257 - 40,065,443UniSTS
RH 3.4 Map9389.5UniSTS
Cytogenetic Map9q21UniSTS
AW433645  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2942,326,341 - 42,326,547 (+)MAPPERmRatBN7.2
Rnor_6.0946,782,189 - 46,782,394NCBIRnor6.0
Rnor_5.0946,467,561 - 46,467,766UniSTSRnor5.0
RGSC_v3.4939,212,697 - 39,212,902UniSTSRGSC3.4
Celera940,073,384 - 40,073,589UniSTS
RH 3.4 Map9389.5UniSTS
Cytogenetic Map9q21UniSTS
BG371733  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2942,308,967 - 42,309,063 (+)MAPPERmRatBN7.2
Rnor_6.0946,764,815 - 46,764,910NCBIRnor6.0
Rnor_5.0946,450,187 - 46,450,282UniSTSRnor5.0
RGSC_v3.4939,195,304 - 39,195,399UniSTSRGSC3.4
Celera940,055,933 - 40,056,028UniSTS
RH 3.4 Map10681.5UniSTS
Cytogenetic Map9q21UniSTS
BE119253  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2942,300,268 - 42,300,435 (+)MAPPERmRatBN7.2
Rnor_6.0946,756,116 - 46,756,282NCBIRnor6.0
Rnor_5.0946,441,488 - 46,441,654UniSTSRnor5.0
RGSC_v3.4939,186,605 - 39,186,771UniSTSRGSC3.4
Celera940,047,234 - 40,047,400UniSTS
RH 3.4 Map9393.9UniSTS
Cytogenetic Map9q21UniSTS
UniSTS:234115  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2942,325,036 - 42,325,132 (+)MAPPERmRatBN7.2
Rnor_6.0946,780,884 - 46,780,979NCBIRnor6.0
Rnor_5.0946,466,256 - 46,466,351UniSTSRnor5.0
RGSC_v3.4939,211,392 - 39,211,487UniSTSRGSC3.4
Celera940,072,079 - 40,072,174UniSTS
Cytogenetic Map9q21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92213332249968732Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:555
Count of miRNA genes:264
Interacting mature miRNAs:321
Transcripts:ENSRNOT00000019180
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 43 41 25 19 25 6 7 74 35 40 11 6
Low 1 16 16 16 2 4 1 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM217582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000019180   ⟹   ENSRNOP00000019180
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl942,273,275 - 42,326,698 (+)Ensembl
Rnor_6.0 Ensembl946,657,922 - 46,782,545 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083322   ⟹   ENSRNOP00000074373
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl942,200,278 - 42,326,698 (+)Ensembl
Rnor_6.0 Ensembl946,657,575 - 46,781,136 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102137   ⟹   ENSRNOP00000092452
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl942,200,278 - 42,326,698 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102257   ⟹   ENSRNOP00000097771
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl942,200,278 - 42,326,698 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105968   ⟹   ENSRNOP00000078532
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl942,200,278 - 42,326,698 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111572   ⟹   ENSRNOP00000085187
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl942,200,278 - 42,326,698 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115451   ⟹   ENSRNOP00000078890
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl942,200,278 - 42,326,698 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115768   ⟹   ENSRNOP00000092349
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl942,200,278 - 42,326,698 (+)Ensembl
RefSeq Acc Id: NM_001106904   ⟹   NP_001100374
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,201,620 - 42,326,698 (+)NCBI
Rnor_6.0946,657,922 - 46,782,545 (+)NCBI
Rnor_5.0946,342,983 - 46,469,618 (+)NCBI
RGSC_v3.4939,087,924 - 39,213,053 (+)RGD
Celera939,949,780 - 40,073,740 (+)RGD
Sequence:
RefSeq Acc Id: XM_008767000   ⟹   XP_008765222
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,711 - 42,326,708 (+)NCBI
Rnor_6.0946,657,444 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767001   ⟹   XP_008765223
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,708 - 42,326,708 (+)NCBI
Rnor_6.0946,657,444 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767003   ⟹   XP_008765225
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,715 - 42,326,708 (+)NCBI
Rnor_6.0946,657,445 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767004   ⟹   XP_008765226
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,902 - 42,326,699 (+)NCBI
Rnor_6.0946,657,445 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767005   ⟹   XP_008765227
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,713 - 42,326,708 (+)NCBI
Rnor_6.0946,657,444 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767006   ⟹   XP_008765228
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,894 - 42,326,708 (+)NCBI
Rnor_6.0946,657,445 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767007   ⟹   XP_008765229
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,708 - 42,326,708 (+)NCBI
Rnor_6.0946,657,444 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767008   ⟹   XP_008765230
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,899 - 42,326,699 (+)NCBI
Rnor_6.0946,657,445 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767009   ⟹   XP_008765231
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,896 - 42,326,708 (+)NCBI
Rnor_6.0946,657,445 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767010   ⟹   XP_008765232
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,897 - 42,326,708 (+)NCBI
Rnor_6.0946,657,445 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767011   ⟹   XP_008765233
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,915 - 42,326,699 (+)NCBI
Rnor_6.0946,657,447 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767012   ⟹   XP_008765234
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,907 - 42,326,708 (+)NCBI
Rnor_6.0946,657,446 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767013   ⟹   XP_008765235
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,909 - 42,326,708 (+)NCBI
Rnor_6.0946,657,446 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767014   ⟹   XP_008765236
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,914 - 42,326,699 (+)NCBI
Rnor_6.0946,657,447 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767015   ⟹   XP_008765237
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,909 - 42,326,699 (+)NCBI
Rnor_6.0946,657,446 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767016   ⟹   XP_008765238
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,917 - 42,326,699 (+)NCBI
Rnor_6.0946,657,448 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596341   ⟹   XP_017451830
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,899 - 42,326,708 (+)NCBI
Rnor_6.0946,657,445 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596342   ⟹   XP_017451831
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,918 - 42,326,699 (+)NCBI
Rnor_6.0946,657,448 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596343   ⟹   XP_017451832
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,909 - 42,326,699 (+)NCBI
Rnor_6.0946,657,446 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596344   ⟹   XP_017451833
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,904 - 42,326,708 (+)NCBI
Rnor_6.0946,657,446 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596346   ⟹   XP_017451835
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,900 - 42,326,708 (+)NCBI
Rnor_6.0946,657,446 - 46,782,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083226   ⟹   XP_038939154
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,907 - 42,326,699 (+)NCBI
RefSeq Acc Id: XM_039083227   ⟹   XP_038939155
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,709 - 42,326,708 (+)NCBI
RefSeq Acc Id: XM_039083228   ⟹   XP_038939156
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,909 - 42,326,699 (+)NCBI
RefSeq Acc Id: XM_039083229   ⟹   XP_038939157
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,713 - 42,326,708 (+)NCBI
RefSeq Acc Id: XM_039083230   ⟹   XP_038939158
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,715 - 42,326,708 (+)NCBI
RefSeq Acc Id: XM_039083231   ⟹   XP_038939159
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,901 - 42,326,708 (+)NCBI
RefSeq Acc Id: XM_039083232   ⟹   XP_038939160
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,715 - 42,326,708 (+)NCBI
RefSeq Acc Id: XM_039083233   ⟹   XP_038939161
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,914 - 42,326,699 (+)NCBI
RefSeq Acc Id: XM_039083234   ⟹   XP_038939162
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,912 - 42,326,699 (+)NCBI
RefSeq Acc Id: XM_039083235   ⟹   XP_038939163
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,907 - 42,326,699 (+)NCBI
RefSeq Acc Id: XM_039083237   ⟹   XP_038939165
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,901 - 42,326,708 (+)NCBI
RefSeq Acc Id: XM_039083238   ⟹   XP_038939166
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,911 - 42,326,708 (+)NCBI
RefSeq Acc Id: XM_039083239   ⟹   XP_038939167
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,917 - 42,326,699 (+)NCBI
RefSeq Acc Id: XM_039083240   ⟹   XP_038939168
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,899 - 42,326,708 (+)NCBI
RefSeq Acc Id: XM_039083242   ⟹   XP_038939170
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,918 - 42,326,699 (+)NCBI
RefSeq Acc Id: XM_039083243   ⟹   XP_038939171
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,919 - 42,326,699 (+)NCBI
RefSeq Acc Id: XM_039083244   ⟹   XP_038939172
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,900 - 42,326,699 (+)NCBI
RefSeq Acc Id: XM_039083245   ⟹   XP_038939173
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,910 - 42,326,699 (+)NCBI
RefSeq Acc Id: XM_039083246   ⟹   XP_038939174
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,909 - 42,326,699 (+)NCBI
RefSeq Acc Id: XM_039083247   ⟹   XP_038939175
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,911 - 42,326,699 (+)NCBI
RefSeq Acc Id: XM_039083248   ⟹   XP_038939176
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,907 - 42,326,699 (+)NCBI
RefSeq Acc Id: XM_039083249   ⟹   XP_038939177
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,904 - 42,326,699 (+)NCBI
RefSeq Acc Id: XM_039083250   ⟹   XP_038939178
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,714 - 42,326,708 (+)NCBI
RefSeq Acc Id: XM_039083252   ⟹   XP_038939180
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,907 - 42,326,699 (+)NCBI
RefSeq Acc Id: XM_039083253   ⟹   XP_038939181
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,902 - 42,326,699 (+)NCBI
RefSeq Acc Id: XM_039083254   ⟹   XP_038939182
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,909 - 42,326,699 (+)NCBI
RefSeq Acc Id: XM_039083255   ⟹   XP_038939183
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,905 - 42,326,699 (+)NCBI
RefSeq Acc Id: XM_039083256   ⟹   XP_038939184
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,916 - 42,326,699 (+)NCBI
RefSeq Acc Id: XM_039083257   ⟹   XP_038939185
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,200,913 - 42,326,699 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001100374 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765222 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765223 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765225 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765226 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765227 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765228 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765229 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765230 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765231 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765232 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765233 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765234 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765235 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765236 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765237 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765238 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451830 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451831 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451832 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451833 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451835 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939154 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939155 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939156 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939157 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939158 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939159 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939160 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939161 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939162 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939163 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939165 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939166 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939167 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939168 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939170 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939171 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939172 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939173 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939174 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939175 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939176 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939177 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939178 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939180 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939181 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939182 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939183 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939184 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939185 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AIU47302 (Get FASTA)   NCBI Sequence Viewer  
  EDL99184 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001100374   ⟸   NM_001106904
- UniProtKB: F1M754 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765222   ⟸   XM_008767000
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008765226   ⟸   XM_008767004
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008765229   ⟸   XM_008767007
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_008765230   ⟸   XM_008767008
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_008765225   ⟸   XM_008767003
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008765223   ⟸   XM_008767001
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008765231   ⟸   XM_008767009
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_008765228   ⟸   XM_008767006
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_008765234   ⟸   XM_008767012
- Peptide Label: isoform X23
- Sequence:
RefSeq Acc Id: XP_008765227   ⟸   XM_008767005
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008765233   ⟸   XM_008767011
- Peptide Label: isoform X22
- Sequence:
RefSeq Acc Id: XP_008765236   ⟸   XM_008767014
- Peptide Label: isoform X32
- Sequence:
RefSeq Acc Id: XP_008765232   ⟸   XM_008767010
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_008765237   ⟸   XM_008767015
- Peptide Label: isoform X45
- Sequence:
RefSeq Acc Id: XP_008765235   ⟸   XM_008767013
- Peptide Label: isoform X30
- Sequence:
RefSeq Acc Id: XP_008765238   ⟸   XM_008767016
- Peptide Label: isoform X47
- Sequence:
RefSeq Acc Id: XP_017451830   ⟸   XM_017596341
- Peptide Label: isoform X21
- Sequence:
RefSeq Acc Id: XP_017451832   ⟸   XM_017596343
- Peptide Label: isoform X29
- Sequence:
RefSeq Acc Id: XP_017451833   ⟸   XM_017596344
- Peptide Label: isoform X31
- Sequence:
RefSeq Acc Id: XP_017451835   ⟸   XM_017596346
- Peptide Label: isoform X50
- Sequence:
RefSeq Acc Id: XP_017451831   ⟸   XM_017596342
- Peptide Label: isoform X26
- Sequence:
RefSeq Acc Id: ENSRNOP00000074373   ⟸   ENSRNOT00000083322
RefSeq Acc Id: ENSRNOP00000019180   ⟸   ENSRNOT00000019180
RefSeq Acc Id: XP_038939155   ⟸   XM_039083227
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038939157   ⟸   XM_039083229
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038939178   ⟸   XM_039083250
- Peptide Label: isoform X41
RefSeq Acc Id: XP_038939158   ⟸   XM_039083230
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038939160   ⟸   XM_039083232
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038939168   ⟸   XM_039083240
- Peptide Label: isoform X28
RefSeq Acc Id: XP_038939172   ⟸   XM_039083244
- Peptide Label: isoform X35
RefSeq Acc Id: XP_038939159   ⟸   XM_039083231
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038939165   ⟸   XM_039083237
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038939181   ⟸   XM_039083253
- Peptide Label: isoform X43
RefSeq Acc Id: XP_038939177   ⟸   XM_039083249
- Peptide Label: isoform X40
RefSeq Acc Id: XP_038939183   ⟸   XM_039083255
- Peptide Label: isoform X46
RefSeq Acc Id: XP_038939154   ⟸   XM_039083226
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038939176   ⟸   XM_039083248
- Peptide Label: isoform X39
RefSeq Acc Id: XP_038939180   ⟸   XM_039083252
- Peptide Label: isoform X42
RefSeq Acc Id: XP_038939163   ⟸   XM_039083235
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038939182   ⟸   XM_039083254
- Peptide Label: isoform X44
RefSeq Acc Id: XP_038939174   ⟸   XM_039083246
- Peptide Label: isoform X37
RefSeq Acc Id: XP_038939156   ⟸   XM_039083228
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038939173   ⟸   XM_039083245
- Peptide Label: isoform X36
RefSeq Acc Id: XP_038939166   ⟸   XM_039083238
- Peptide Label: isoform X25
RefSeq Acc Id: XP_038939175   ⟸   XM_039083247
- Peptide Label: isoform X38
RefSeq Acc Id: XP_038939162   ⟸   XM_039083234
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038939185   ⟸   XM_039083257
- Peptide Label: isoform X49
RefSeq Acc Id: XP_038939161   ⟸   XM_039083233
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038939184   ⟸   XM_039083256
- Peptide Label: isoform X48
RefSeq Acc Id: XP_038939167   ⟸   XM_039083239
- Peptide Label: isoform X27
RefSeq Acc Id: XP_038939170   ⟸   XM_039083242
- Peptide Label: isoform X33
RefSeq Acc Id: XP_038939171   ⟸   XM_039083243
- Peptide Label: isoform X34
RefSeq Acc Id: ENSRNOP00000078532   ⟸   ENSRNOT00000105968
RefSeq Acc Id: ENSRNOP00000078890   ⟸   ENSRNOT00000115451
RefSeq Acc Id: ENSRNOP00000092452   ⟸   ENSRNOT00000102137
RefSeq Acc Id: ENSRNOP00000085187   ⟸   ENSRNOT00000111572
RefSeq Acc Id: ENSRNOP00000097771   ⟸   ENSRNOT00000102257
RefSeq Acc Id: ENSRNOP00000092349   ⟸   ENSRNOT00000115768
Protein Domains
CNH   Protein kinase

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305322 AgrOrtholog
Ensembl Genes ENSRNOG00000014013 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000019180 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000074373 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019180 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000083322 UniProtKB/TrEMBL
InterPro Citron UniProtKB/TrEMBL
  Kinase-like_dom UniProtKB/TrEMBL
  Prot_kinase_cat_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
KEGG Report rno:301363 UniProtKB/TrEMBL
NCBI Gene 301363 ENTREZGENE
Pfam CNH UniProtKB/TrEMBL
  Pkinase UniProtKB/TrEMBL
PhenoGen Map4k4 PhenoGen
PROSITE CNH UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART CNH UniProtKB/TrEMBL
  S_TKc UniProtKB/TrEMBL
Superfamily-SCOP Kinase_like UniProtKB/TrEMBL
UniProt A0A097PIG6_RAT UniProtKB/TrEMBL
  A0A0G2K7W4_RAT UniProtKB/TrEMBL
  F1M754 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Map4k4  mitogen-activated protein kinase kinase kinase kinase 4   Map4k4_predicted  mitogen-activated protein kinase kinase kinase kinase 4 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Map4k4_predicted  mitogen-activated protein kinase kinase kinase kinase 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED