Cdkn2aip (CDKN2A interacting protein) - Rat Genome Database

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Gene: Cdkn2aip (CDKN2A interacting protein) Rattus norvegicus
Analyze
Symbol: Cdkn2aip
Name: CDKN2A interacting protein
RGD ID: 1305302
Description: Predicted to enable p53 binding activity. Predicted to be involved in several processes, including cellular response to DNA damage stimulus; regulation of cell growth; and regulation of protein stability. Predicted to be located in granular component. Predicted to be active in nucleolus and nucleoplasm. Orthologous to human CDKN2AIP (CDKN2A interacting protein); INTERACTS WITH bisphenol A; Brodifacoum; gentamycin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CDKN2A-interacting protein; collaborator of ARF; LOC306455; MGC112660; RGD1305302; similar to RIKEN cDNA 4921511I16
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21644,536,147 - 44,546,216 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1644,536,234 - 44,540,033 (+)Ensembl
Rnor_6.01647,664,864 - 47,670,935 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1647,665,816 - 47,669,093 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01647,385,297 - 47,390,428 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41647,746,221 - 47,749,499 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11647,746,295 - 47,749,573 (+)NCBI
Celera1642,547,908 - 42,551,186 (+)NCBICelera
Cytogenetic Map16q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
granular component  (ISO)
nucleolus  (IBA,ISO)
nucleoplasm  (IBA,ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:12154087   PMID:12581788   PMID:15109303   PMID:24825908  


Genomics

Comparative Map Data
Cdkn2aip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21644,536,147 - 44,546,216 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1644,536,234 - 44,540,033 (+)Ensembl
Rnor_6.01647,664,864 - 47,670,935 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1647,665,816 - 47,669,093 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01647,385,297 - 47,390,428 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41647,746,221 - 47,749,499 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11647,746,295 - 47,749,573 (+)NCBI
Celera1642,547,908 - 42,551,186 (+)NCBICelera
Cytogenetic Map16q11NCBI
CDKN2AIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384183,444,636 - 183,449,064 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl4183,444,635 - 183,449,064 (+)EnsemblGRCh38hg38GRCh38
GRCh374184,365,789 - 184,370,217 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364184,602,783 - 184,606,043 (+)NCBINCBI36hg18NCBI36
Celera4181,698,578 - 181,701,840 (+)NCBI
Cytogenetic Map4q35.1NCBI
HuRef4180,125,202 - 180,128,464 (+)NCBIHuRef
CHM1_14184,342,508 - 184,345,773 (+)NCBICHM1_1
T2T-CHM13v2.04186,787,446 - 186,791,876 (+)NCBI
Cdkn2aip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39848,162,379 - 48,166,966 (-)NCBIGRCm39mm39
GRCm39 Ensembl848,162,379 - 48,166,967 (-)Ensembl
GRCm38847,709,344 - 47,713,931 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl847,709,344 - 47,713,932 (-)EnsemblGRCm38mm10GRCm38
MGSCv37848,794,698 - 48,799,285 (-)NCBIGRCm37mm9NCBIm37
MGSCv36849,208,265 - 49,212,716 (-)NCBImm8
Celera850,386,813 - 50,391,398 (-)NCBICelera
Cytogenetic Map8B1.1NCBI
Cdkn2aip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540325,363,658 - 25,366,295 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540325,363,170 - 25,366,481 (-)NCBIChiLan1.0ChiLan1.0
CDKN2AIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14187,848,211 - 187,853,533 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4187,848,215 - 187,852,673 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04175,621,561 - 175,626,138 (+)NCBIMhudiblu_PPA_v0panPan3
CDKN2AIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11646,899,146 - 46,903,523 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1646,900,521 - 46,903,339 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1647,332,264 - 47,336,599 (-)NCBI
ROS_Cfam_1.01649,122,256 - 49,126,587 (-)NCBI
ROS_Cfam_1.0 Ensembl1649,123,024 - 49,126,616 (-)Ensembl
UMICH_Zoey_3.11647,084,374 - 47,088,704 (-)NCBI
UNSW_CanFamBas_1.01647,699,883 - 47,704,220 (-)NCBI
UU_Cfam_GSD_1.01647,834,077 - 47,838,409 (-)NCBI
Cdkn2aip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494332,467,590 - 32,471,315 (+)NCBI
SpeTri2.0NW_0049365545,638,671 - 5,642,276 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDKN2AIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1544,886,692 - 44,892,246 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11544,885,603 - 44,890,504 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21551,498,582 - 51,503,462 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDKN2AIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17129,429,535 - 129,433,687 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl7129,429,533 - 129,435,285 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037109,642,769 - 109,647,398 (+)NCBIVero_WHO_p1.0
Cdkn2aip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476914,214,103 - 14,217,508 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH132170  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21644,539,280 - 44,539,497 (+)MAPPERmRatBN7.2
Rnor_6.01647,668,863 - 47,669,079NCBIRnor6.0
Rnor_5.01647,388,356 - 47,388,572UniSTSRnor5.0
RGSC_v3.41647,749,268 - 47,749,484UniSTSRGSC3.4
Celera1642,550,955 - 42,551,171UniSTS
Cytogenetic Map16q11UniSTS
Cdkn2aip  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21644,539,051 - 44,539,594 (+)MAPPERmRatBN7.2
Rnor_6.01647,668,634 - 47,669,176NCBIRnor6.0
Rnor_5.01647,388,127 - 47,388,669UniSTSRnor5.0
RGSC_v3.41647,749,039 - 47,749,581UniSTSRGSC3.4
Celera1642,550,726 - 42,551,268UniSTS
Cytogenetic Map16q11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
631833Sach2Saccharin preference QTL 240.01consumption behavior trait (VT:0002069)calculated saccharin drink intake rate (CMO:0001613)164302484250166018Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:83
Interacting mature miRNAs:90
Transcripts:ENSRNOT00000030519
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 28 52 36 19 36 1 1 74 34 41 11 1
Low 15 5 5 5 7 10 1 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000030519   ⟹   ENSRNOP00000029705
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1644,536,362 - 44,540,033 (+)Ensembl
Rnor_6.0 Ensembl1647,665,816 - 47,669,093 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108326   ⟹   ENSRNOP00000093999
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1644,536,234 - 44,539,313 (+)Ensembl
RefSeq Acc Id: NM_001014000   ⟹   NP_001014022
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21644,536,234 - 44,539,512 (+)NCBI
Rnor_6.01647,665,816 - 47,669,094 (+)NCBI
Rnor_5.01647,385,297 - 47,390,428 (+)NCBI
RGSC_v3.41647,746,221 - 47,749,499 (+)RGD
Celera1642,547,908 - 42,551,186 (+)RGD
Sequence:
RefSeq Acc Id: XM_006253147   ⟹   XP_006253209
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21644,536,149 - 44,541,353 (+)NCBI
Rnor_6.01647,664,864 - 47,670,935 (+)NCBI
Rnor_5.01647,385,297 - 47,390,428 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094518   ⟹   XP_038950446
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21644,536,147 - 44,546,216 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001014022   ⟸   NM_001014000
- UniProtKB: Q4KM89 (UniProtKB/Swiss-Prot),   Q5U2X0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006253209   ⟸   XM_006253147
- Peptide Label: isoform X2
- UniProtKB: Q5U2X0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000029705   ⟸   ENSRNOT00000030519
RefSeq Acc Id: XP_038950446   ⟸   XM_039094518
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000093999   ⟸   ENSRNOT00000108326
Protein Domains
DRBM   XRN2-binding (XTBD)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U2X0-F1-model_v2 AlphaFold Q5U2X0 1-570 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700087
Promoter ID:EPDNEW_R10611
Type:initiation region
Name:Cdkn2aip_2
Description:CDKN2A interacting protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R10612  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01647,665,780 - 47,665,840EPDNEW
RGD ID:13700088
Promoter ID:EPDNEW_R10612
Type:initiation region
Name:Cdkn2aip_1
Description:CDKN2A interacting protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R10611  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01647,666,005 - 47,666,065EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305302 AgrOrtholog
BioCyc Gene G2FUF-11411 BioCyc
Ensembl Genes ENSRNOG00000022736 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000029705 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000093999.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030519 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000108326.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134740 IMAGE-MGC_LOAD
InterPro dsRBD_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  XTBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:306455 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94451 IMAGE-MGC_LOAD
NCBI Gene 306455 ENTREZGENE
Pfam XTBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cdkn2aip PhenoGen
PROSITE DS_RBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  XTBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6AJX9_RAT UniProtKB/TrEMBL
  CARF_RAT UniProtKB/Swiss-Prot
  Q4KM89 ENTREZGENE
  Q5U2X0 ENTREZGENE
UniProt Secondary Q4KM89 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Cdkn2aip  CDKN2A interacting protein  RGD1305302  similar to RIKEN cDNA 4921511I16  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1305302  similar to RIKEN cDNA 4921511I16  RGD1305302_predicted  similar to RIKEN cDNA 4921511I16 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1305302_predicted  similar to RIKEN cDNA 4921511I16 (predicted)  LOC306455_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC306455_predicted  similar to RIKEN cDNA 4921511I16 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL