Dcaf1 (DDB1 and CUL4 associated factor 1) - Rat Genome Database

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Gene: Dcaf1 (DDB1 and CUL4 associated factor 1) Rattus norvegicus
Analyze
Symbol: Dcaf1
Name: DDB1 and CUL4 associated factor 1
RGD ID: 1305176
Description: Predicted to enable histone kinase activity (H2A-T120 specific) and nuclear estrogen receptor binding activity. Predicted to be involved in several processes, including cell competition in a multicellular organism; immune system development; and negative regulation of transcription by RNA polymerase II. Predicted to be located in fibrillar center and nucleoplasm. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human DCAF1 (DDB1 and CUL4 associated factor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DDB1- and CUL4-associated factor 1; LOC315987; RGD1305176; similar to mKIAA0800 protein; Vpr (HIV-1) binding protein; Vprbp
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28107,466,229 - 107,540,633 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl8107,474,312 - 107,540,627 (+)Ensembl
Rnor_6.08115,538,365 - 115,615,282 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,546,712 - 115,615,282 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08114,898,496 - 114,974,112 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48112,034,908 - 112,102,320 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18112,061,887 - 112,120,790 (+)NCBI
Celera8106,786,375 - 106,852,580 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16949367   PMID:18850735   PMID:20178741   PMID:20644714   PMID:22157821   PMID:24140421   PMID:28068668  


Genomics

Comparative Map Data
Dcaf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28107,466,229 - 107,540,633 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl8107,474,312 - 107,540,627 (+)Ensembl
Rnor_6.08115,538,365 - 115,615,282 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,546,712 - 115,615,282 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08114,898,496 - 114,974,112 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48112,034,908 - 112,102,320 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18112,061,887 - 112,120,790 (+)NCBI
Celera8106,786,375 - 106,852,580 (+)NCBICelera
Cytogenetic Map8q32NCBI
DCAF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38351,395,867 - 51,505,639 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl351,395,867 - 51,500,015 (-)EnsemblGRCh38hg38GRCh38
GRCh37351,433,298 - 51,534,031 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36351,408,338 - 51,509,041 (-)NCBINCBI36hg18NCBI36
Celera351,407,652 - 51,511,665 (-)NCBI
Cytogenetic Map3p21.2NCBI
HuRef351,490,525 - 51,594,696 (-)NCBIHuRef
CHM1_1351,385,206 - 51,485,919 (-)NCBICHM1_1
T2T-CHM13v2.0351,426,284 - 51,530,457 (-)NCBI
Dcaf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,691,354 - 106,758,191 (+)NCBIGRCm39mm39
GRCm39 Ensembl9106,699,073 - 106,758,191 (+)Ensembl
GRCm389106,814,169 - 106,880,992 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,821,874 - 106,880,992 (+)EnsemblGRCm38mm10GRCm38
MGSCv379106,724,307 - 106,783,323 (+)NCBIGRCm37mm9NCBIm37
MGSCv369106,680,077 - 106,738,533 (+)NCBImm8
Celera9106,446,540 - 106,505,051 (+)NCBICelera
Cytogenetic Map9F1NCBI
Dcaf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555323,085,386 - 3,154,671 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555323,085,386 - 3,153,952 (-)NCBIChiLan1.0ChiLan1.0
DCAF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1352,560,427 - 52,668,919 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl352,560,427 - 52,663,807 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0351,326,589 - 51,430,217 (-)NCBIMhudiblu_PPA_v0panPan3
DCAF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12038,109,974 - 38,187,621 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2038,125,078 - 38,187,107 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2038,089,540 - 38,167,146 (+)NCBI
ROS_Cfam_1.02038,458,824 - 38,536,454 (+)NCBI
ROS_Cfam_1.0 Ensembl2038,464,033 - 38,536,453 (+)Ensembl
UMICH_Zoey_3.12037,822,249 - 37,899,846 (+)NCBI
UNSW_CanFamBas_1.02038,226,332 - 38,304,159 (+)NCBI
UU_Cfam_GSD_1.02038,516,174 - 38,593,797 (+)NCBI
Dcaf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560266,025,750 - 66,101,560 (-)NCBI
SpeTri2.0NW_0049365292,786,252 - 2,856,516 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCAF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1333,670,977 - 33,750,772 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11333,670,976 - 33,750,872 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21336,900,767 - 36,968,157 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DCAF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12212,736,784 - 12,843,762 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2212,739,665 - 12,823,363 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041154,127,859 - 154,231,832 (+)NCBIVero_WHO_p1.0
Dcaf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247305,176,828 - 5,240,680 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247305,176,828 - 5,245,548 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D8Uia4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28107,500,218 - 107,500,385 (+)MAPPERmRatBN7.2
Rnor_6.08115,563,512 - 115,563,678NCBIRnor6.0
Rnor_5.08114,923,447 - 114,923,613UniSTSRnor5.0
RGSC_v3.48112,060,884 - 112,061,051RGDRGSC3.4
RGSC_v3.48112,060,885 - 112,061,051UniSTSRGSC3.4
RGSC_v3.18112,080,339 - 112,080,506RGD
Celera8106,812,114 - 106,812,280UniSTS
Cytogenetic Map8q32UniSTS
D8Uia5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28107,500,239 - 107,500,375 (+)MAPPERmRatBN7.2
Rnor_6.08115,563,533 - 115,563,668NCBIRnor6.0
Rnor_5.08114,923,468 - 114,923,603UniSTSRnor5.0
RGSC_v3.48112,060,905 - 112,061,041RGDRGSC3.4
RGSC_v3.48112,060,906 - 112,061,041UniSTSRGSC3.4
RGSC_v3.18112,080,360 - 112,080,496RGD
Celera8106,812,135 - 106,812,270UniSTS
Cytogenetic Map8q32UniSTS
D8Got358  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera8106,811,329 - 106,811,561UniSTS
Cytogenetic Map8q32UniSTS
C79467  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2315,810,362 - 15,810,466 (+)MAPPERmRatBN7.2
mRatBN7.28107,540,327 - 107,540,448 (+)MAPPERmRatBN7.2
Rnor_6.08115,602,723 - 115,602,843NCBIRnor6.0
Rnor_6.08115,614,972 - 115,615,092NCBIRnor6.0
Rnor_5.08114,973,802 - 114,973,922UniSTSRnor5.0
Rnor_5.08114,962,082 - 114,962,202UniSTSRnor5.0
RGSC_v3.48112,102,010 - 112,102,130UniSTSRGSC3.4
Celera8106,852,269 - 106,852,389UniSTS
Cytogenetic Map8q32UniSTS
AW530463  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28107,508,795 - 107,508,992 (+)MAPPERmRatBN7.2
Rnor_6.08115,572,085 - 115,572,281NCBIRnor6.0
Rnor_5.08114,932,020 - 114,932,216UniSTSRnor5.0
RGSC_v3.48112,069,459 - 112,069,655UniSTSRGSC3.4
Celera8106,820,688 - 106,820,884UniSTS
RH 3.4 Map81137.1UniSTS
Cytogenetic Map8q32UniSTS
RH137304  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.08114,973,881 - 114,974,032NCBIRnor5.0
Rnor_5.08114,962,161 - 114,962,312NCBIRnor5.0
RGSC_v3.48112,102,090 - 112,102,240UniSTSRGSC3.4
Celera8106,852,349 - 106,852,499UniSTS
RH 3.4 Map81137.1UniSTS
Cytogenetic Map8q32UniSTS
RH138156  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28107,541,257 - 107,541,391 (+)MAPPERmRatBN7.2
Rnor_6.08115,615,902 - 115,616,035NCBIRnor6.0
Rnor_5.08114,974,732 - 114,974,865UniSTSRnor5.0
RGSC_v3.48112,102,940 - 112,103,073UniSTSRGSC3.4
Celera8106,853,200 - 106,853,333UniSTS
RH 3.4 Map81152.7UniSTS
Cytogenetic Map8q32UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088624Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8102370617108923645Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:350
Count of miRNA genes:195
Interacting mature miRNAs:230
Transcripts:ENSRNOT00000018932
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 26 46 30 19 30 1 1 74 34 41 11 1
Low 17 11 11 11 7 10 1 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000018932   ⟹   ENSRNOP00000018932
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8107,474,312 - 107,540,627 (+)Ensembl
Rnor_6.0 Ensembl8115,546,893 - 115,615,282 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079801   ⟹   ENSRNOP00000075456
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8107,474,312 - 107,535,284 (+)Ensembl
Rnor_6.0 Ensembl8115,546,712 - 115,611,314 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113346   ⟹   ENSRNOP00000096748
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8107,483,611 - 107,526,800 (+)Ensembl
RefSeq Acc Id: NM_001354204   ⟹   NP_001341133
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28107,474,328 - 107,540,633 (+)NCBI
RefSeq Acc Id: XM_039081570   ⟹   XP_038937498
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28107,473,536 - 107,534,552 (+)NCBI
RefSeq Acc Id: XM_039081571   ⟹   XP_038937499
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28107,466,229 - 107,534,552 (+)NCBI
RefSeq Acc Id: XM_039081572   ⟹   XP_038937500
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28107,473,537 - 107,539,918 (+)NCBI
RefSeq Acc Id: XM_039081573   ⟹   XP_038937501
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28107,473,536 - 107,539,918 (+)NCBI
RefSeq Acc Id: XM_039081574   ⟹   XP_038937502
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28107,474,267 - 107,534,552 (+)NCBI
RefSeq Acc Id: XM_039081575   ⟹   XP_038937503
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28107,474,613 - 107,534,552 (+)NCBI
RefSeq Acc Id: XM_039081576   ⟹   XP_038937504
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28107,473,161 - 107,534,552 (+)NCBI
RefSeq Acc Id: XR_005487844
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28107,473,536 - 107,539,918 (+)NCBI
RefSeq Acc Id: XR_005487845
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28107,473,536 - 107,539,918 (+)NCBI
Reference Sequences
RefSeq Acc Id: ENSRNOP00000075456   ⟸   ENSRNOT00000079801
RefSeq Acc Id: ENSRNOP00000018932   ⟸   ENSRNOT00000018932
RefSeq Acc Id: XP_038937499   ⟸   XM_039081571
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038937504   ⟸   XM_039081576
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038937501   ⟸   XM_039081573
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038937498   ⟸   XM_039081570
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038937500   ⟸   XM_039081572
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038937502   ⟸   XM_039081574
- Peptide Label: isoform X5
RefSeq Acc Id: NP_001341133   ⟸   NM_001354204
RefSeq Acc Id: XP_038937503   ⟸   XM_039081575
- Peptide Label: isoform X5
RefSeq Acc Id: ENSRNOP00000096748   ⟸   ENSRNOT00000113346

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2KAM8-F1-model_v2 AlphaFold A0A0G2KAM8 1-1460 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305176 AgrOrtholog
BioCyc Gene G2FUF-29222 BioCyc
Ensembl Genes ENSRNOG00000013841 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000018932 ENTREZGENE
  ENSRNOP00000018932.7 UniProtKB/TrEMBL
  ENSRNOP00000075456 ENTREZGENE
  ENSRNOP00000075456.2 UniProtKB/TrEMBL
  ENSRNOP00000096748 ENTREZGENE
  ENSRNOP00000096748.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018932 ENTREZGENE
  ENSRNOT00000018932.7 UniProtKB/TrEMBL
  ENSRNOT00000079801 ENTREZGENE
  ENSRNOT00000079801.2 UniProtKB/TrEMBL
  ENSRNOT00000113346 ENTREZGENE
  ENSRNOT00000113346.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  LisH_dimerisation UniProtKB/TrEMBL
  Quinoprotein_ADH-like_supfam UniProtKB/TrEMBL
  VPRBP/DCAF1 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene 315987 ENTREZGENE
PANTHER PTHR13129 UniProtKB/TrEMBL
PhenoGen Dcaf1 PhenoGen
PROSITE LISH UniProtKB/TrEMBL
SMART LisH UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
  SSF50998 UniProtKB/TrEMBL
  WD40_like UniProtKB/TrEMBL
UniProt A0A0G2KAM8_RAT UniProtKB/TrEMBL
  A0A8I6AMF1_RAT UniProtKB/TrEMBL
  D3ZKB7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-15 Dcaf1  DDB1 and CUL4 associated factor 1  Vprbp  Vpr (HIV-1) binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Vprbp  Vpr (HIV-1) binding protein  RGD1305176_predicted  similar to mKIAA0800 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1305176_predicted  similar to mKIAA0800 protein (predicted)  LOC315987_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC315987_predicted  similar to mKIAA0800 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL