Gask1a (golgi associated kinase 1A) - Rat Genome Database

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Gene: Gask1a (golgi associated kinase 1A) Rattus norvegicus
Analyze
Symbol: Gask1a
Name: golgi associated kinase 1A
RGD ID: 1305157
Description: Predicted to be located in endoplasmic reticulum and extracellular region. Predicted to be active in Golgi apparatus. Orthologous to human GASK1A (golgi associated kinase 1A); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Fam198a; family with sequence similarity 198, member A; Golgi-associated kinase 1A; LOC316090; RGD1305157; similar to hypothetical basic protein I-19
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28121,610,779 - 121,643,742 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8121,610,787 - 121,642,942 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8127,202,332 - 127,238,573 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.08125,401,409 - 125,437,644 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.08123,231,119 - 123,264,497 (+)NCBIRnor_WKY
Rnor_6.08130,581,072 - 130,614,118 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8130,581,062 - 130,612,510 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08129,756,079 - 129,789,361 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48126,953,763 - 126,991,033 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18126,977,122 - 127,007,592 (-)NCBI
Celera8120,735,518 - 120,768,086 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:30188967  


Genomics

Comparative Map Data
Gask1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28121,610,779 - 121,643,742 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8121,610,787 - 121,642,942 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8127,202,332 - 127,238,573 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.08125,401,409 - 125,437,644 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.08123,231,119 - 123,264,497 (+)NCBIRnor_WKY
Rnor_6.08130,581,072 - 130,614,118 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8130,581,062 - 130,612,510 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08129,756,079 - 129,789,361 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48126,953,763 - 126,991,033 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18126,977,122 - 127,007,592 (-)NCBI
Celera8120,735,518 - 120,768,086 (+)NCBICelera
Cytogenetic Map8q32NCBI
GASK1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38342,979,311 - 43,057,715 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl342,979,087 - 43,067,898 (+)EnsemblGRCh38hg38GRCh38
GRCh37343,020,803 - 43,099,207 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36342,995,763 - 43,074,211 (+)NCBINCBI36Build 36hg18NCBI36
Celera342,958,596 - 43,036,717 (+)NCBICelera
Cytogenetic Map3p22.1NCBI
HuRef343,063,911 - 43,142,036 (+)NCBIHuRef
CHM1_1342,970,704 - 43,048,832 (+)NCBICHM1_1
T2T-CHM13v2.0342,994,952 - 43,073,043 (+)NCBIT2T-CHM13v2.0
Gask1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,780,054 - 121,817,379 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9121,780,054 - 121,809,275 (+)EnsemblGRCm39 Ensembl
GRCm389121,950,988 - 121,988,313 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,950,988 - 121,980,209 (+)EnsemblGRCm38mm10GRCm38
MGSCv379121,861,852 - 121,887,803 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369121,801,432 - 121,827,385 (+)NCBIMGSCv36mm8
Celera9122,428,461 - 122,453,585 (+)NCBICelera
Cytogenetic Map9F4NCBI
Gask1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542027,901,885 - 27,952,998 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542027,900,342 - 27,931,079 (-)NCBIChiLan1.0ChiLan1.0
GASK1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1343,945,071 - 44,029,286 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl343,945,071 - 44,022,902 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0342,845,169 - 42,967,507 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
GASK1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12312,019,079 - 12,085,993 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2312,034,221 - 12,085,293 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2311,979,016 - 12,061,600 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02312,294,713 - 12,377,445 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12312,096,868 - 12,179,732 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02312,239,116 - 12,321,841 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02312,242,835 - 12,325,526 (+)NCBIUU_Cfam_GSD_1.0
Gask1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118199,798,226 - 199,854,605 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366952,150,547 - 2,206,931 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GASK1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1326,415,710 - 26,473,645 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11326,415,637 - 26,473,649 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21329,168,962 - 29,181,652 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GASK1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1224,425,802 - 4,506,027 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl224,426,912 - 4,506,776 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041162,692,097 - 162,772,597 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gask1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473076,833,745 - 76,873,600 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473076,833,237 - 76,875,323 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH129890  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28121,645,136 - 121,645,316 (+)MAPPERmRatBN7.2
Rnor_6.08130,615,513 - 130,615,692NCBIRnor6.0
Rnor_5.08129,790,756 - 129,790,935UniSTSRnor5.0
RGSC_v3.48126,954,254 - 126,954,433UniSTSRGSC3.4
Celera8120,769,481 - 120,769,660UniSTS
RH 3.4 Map81259.09UniSTS
Cytogenetic Map8q32UniSTS
RH131869  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28121,643,339 - 121,643,555 (+)MAPPERmRatBN7.2
Rnor_6.08130,613,716 - 130,613,931NCBIRnor6.0
Rnor_5.08129,788,959 - 129,789,174UniSTSRnor5.0
RGSC_v3.48126,956,015 - 126,956,230UniSTSRGSC3.4
Celera8120,767,684 - 120,767,899UniSTS
RH 3.4 Map81260.1UniSTS
Cytogenetic Map8q32UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:152
Count of miRNA genes:122
Interacting mature miRNAs:134
Transcripts:ENSRNOT00000014323, ENSRNOT00000055866
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 1 1 4
Low 33 32 16 19 16 8 11 70 25 32 11 8
Below cutoff 3 10 22 22 22 4 10 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000014323   ⟹   ENSRNOP00000014323
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8121,610,787 - 121,642,942 (+)Ensembl
Rnor_6.0 Ensembl8130,581,062 - 130,612,510 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115999   ⟹   ENSRNOP00000090742
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8121,610,793 - 121,642,942 (+)Ensembl
RefSeq Acc Id: XM_039082771   ⟹   XP_038938699
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,610,779 - 121,643,742 (+)NCBI
RefSeq Acc Id: XM_236724   ⟹   XP_236724
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28121,610,800 - 121,643,742 (+)NCBI
Rnor_6.08130,581,072 - 130,614,118 (+)NCBI
Rnor_5.08129,756,079 - 129,789,361 (+)NCBI
RGSC_v3.48126,953,763 - 126,991,033 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001386256 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938699 (Get FASTA)   NCBI Sequence Viewer  
  XP_236724 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_236724   ⟸   XM_236724
- Peptide Label: isoform X2
- UniProtKB: F1M9D8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000014323   ⟸   ENSRNOT00000014323
RefSeq Acc Id: XP_038938699   ⟸   XM_039082771
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000090742   ⟸   ENSRNOT00000115999

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M9D8-F1-model_v2 AlphaFold F1M9D8 1-564 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
8 130598552 130598553 A G snv ACI/N (MCW), Buf/N (MCW), F344/NRrrc (MCW), M520/N (MCW), MR/N (MCW), WKY/N (MCW), WN/N (MCW)
8 130599492 130599493 G A snv SHR/NHsd (RGD), SHRSP/Gcrc (RGD), HXB10/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
8 129774195 129774196 G A snv SHR/NCrlPrin (KNAW), SHR/NHsd (KNAW), Crl:SD (UDEL), SHR/OlaIpcvPrin (KNAW), SHRSP/Gcrc (KNAW), SHR/OlaIpcv (KNAW)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
8 121629116 121629117 G A snv HXB10/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), HXB4/IpcvMcwi (2020)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305157 AgrOrtholog
BioCyc Gene G2FUF-28671 BioCyc
Ensembl Genes ENSRNOG00000025676 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000014323 ENTREZGENE
  ENSRNOP00000014323.6 UniProtKB/TrEMBL
  ENSRNOP00000090742.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014323 ENTREZGENE
  ENSRNOT00000014323.8 UniProtKB/TrEMBL
  ENSRNOT00000115999.1 UniProtKB/TrEMBL
InterPro FAM198 UniProtKB/TrEMBL
KEGG Report rno:316090 UniProtKB/TrEMBL
NCBI Gene 316090 ENTREZGENE
PANTHER PTHR15905 UniProtKB/TrEMBL
Pfam FAM198 UniProtKB/TrEMBL
PhenoGen Gask1a PhenoGen
UniProt A0A8I6AAQ5_RAT UniProtKB/TrEMBL
  F1M9D8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-10-30 Gask1a  golgi associated kinase 1A  Fam198a  family with sequence similarity 198, member A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-02-12 Fam198a  family with sequence similarity 198, member A  RGD1305157  similar to hypothetical basic protein I-19   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1305157  similar to hypothetical basic protein I-19   RGD1305157_predicted  similar to hypothetical basic protein I-19 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1305157_predicted  similar to hypothetical basic protein I-19 (predicted)  LOC316090_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC316090_predicted  similar to hypothetical basic protein I-19 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL