Rwdd2b (RWD domain containing 2B) - Rat Genome Database

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Gene: Rwdd2b (RWD domain containing 2B) Rattus norvegicus
Analyze
Symbol: Rwdd2b
Name: RWD domain containing 2B
RGD ID: 1305062
Description: Orthologous to human RWDD2B (RWD domain containing 2B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC304132; RGD1305062; RWD domain-containing protein 2B; similar to open reading frame 5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21126,665,877 - 26,677,986 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1126,665,877 - 26,674,603 (-)Ensembl
Rnor_6.01127,085,708 - 27,094,364 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1127,085,711 - 27,094,364 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01130,711,156 - 30,719,812 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41127,189,244 - 27,197,900 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11127,190,414 - 27,192,840 (-)NCBI
Celera1126,418,325 - 26,426,990 (-)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Rwdd2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21126,665,877 - 26,677,986 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1126,665,877 - 26,674,603 (-)Ensembl
Rnor_6.01127,085,708 - 27,094,364 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1127,085,711 - 27,094,364 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01130,711,156 - 30,719,812 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41127,189,244 - 27,197,900 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11127,190,414 - 27,192,840 (-)NCBI
Celera1126,418,325 - 26,426,990 (-)NCBICelera
Cytogenetic Map11q11NCBI
RWDD2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382129,004,384 - 29,019,349 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2129,004,384 - 29,019,360 (-)EnsemblGRCh38hg38GRCh38
GRCh372130,376,705 - 30,391,670 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362129,299,951 - 29,313,563 (-)NCBINCBI36hg18NCBI36
Build 342129,299,952 - 29,313,554NCBI
Celera2115,560,812 - 15,575,163 (-)NCBI
Cytogenetic Map21q21.3NCBI
HuRef2115,782,744 - 15,798,035 (-)NCBIHuRef
CHM1_12129,940,417 - 29,954,042 (-)NCBICHM1_1
T2T-CHM13v2.02127,367,085 - 27,382,803 (-)NCBI
Rwdd2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391687,230,219 - 87,237,480 (-)NCBIGRCm39mm39
GRCm39 Ensembl1687,230,295 - 87,237,461 (-)Ensembl
GRCm381687,433,331 - 87,440,592 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1687,433,407 - 87,440,573 (-)EnsemblGRCm38mm10GRCm38
MGSCv371687,433,576 - 87,440,837 (-)NCBIGRCm37mm9NCBIm37
MGSCv361687,322,605 - 87,329,742 (-)NCBImm8
Celera1687,625,667 - 87,629,850 (-)NCBICelera
Cytogenetic Map16C3.3NCBI
Rwdd2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540728,359,487 - 28,371,678 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540728,363,476 - 28,371,491 (-)NCBIChiLan1.0ChiLan1.0
RWDD2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12128,825,419 - 28,838,801 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2128,825,419 - 28,838,801 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02115,436,922 - 15,451,135 (-)NCBIMhudiblu_PPA_v0panPan3
RWDD2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13124,017,573 - 24,034,230 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3124,018,397 - 24,031,147 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3124,010,513 - 24,027,355 (-)NCBI
ROS_Cfam_1.03124,131,144 - 24,148,011 (-)NCBI
ROS_Cfam_1.0 Ensembl3124,131,418 - 24,144,988 (-)Ensembl
UMICH_Zoey_3.13124,081,547 - 24,098,464 (-)NCBI
UNSW_CanFamBas_1.03124,083,221 - 24,100,166 (-)NCBI
UU_Cfam_GSD_1.03124,554,706 - 24,571,592 (-)NCBI
Rwdd2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497124,466,941 - 24,478,806 (-)NCBI
SpeTri2.0NW_00493650012,989,064 - 13,000,582 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LTN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13192,363,970 - 192,373,946 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113192,359,972 - 192,374,354 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213202,667,551 - 202,676,583 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RWDD2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1263,206,863 - 63,213,752 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl263,206,876 - 63,216,793 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660715,791,926 - 5,799,949 (+)NCBIVero_WHO_p1.0
Rwdd2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474516,994,234 - 17,004,549 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462474516,998,155 - 17,004,825 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D11Rat26  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21126,669,782 - 26,669,935 (+)MAPPERmRatBN7.2
Rnor_6.01127,089,609 - 27,089,757NCBIRnor6.0
Rnor_5.01130,715,057 - 30,715,205UniSTSRnor5.0
RGSC_v3.41127,193,144 - 27,193,293RGDRGSC3.4
RGSC_v3.41127,193,145 - 27,193,293UniSTSRGSC3.4
RGSC_v3.11127,193,144 - 27,193,293RGD
Celera1126,422,241 - 26,422,389UniSTS
RH 3.4 Map11153.8RGD
RH 3.4 Map11153.8UniSTS
RH 2.0 Map11492.3RGD
FHH x ACI Map1110.0599RGD
Cytogenetic Map11q11UniSTS
BE112989  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21126,674,987 - 26,675,149 (+)MAPPERmRatBN7.2
Rnor_6.01127,094,808 - 27,094,969NCBIRnor6.0
Rnor_5.01130,720,256 - 30,720,417UniSTSRnor5.0
Rnor_5.01130,694,048 - 30,694,209UniSTSRnor5.0
RGSC_v3.41127,198,344 - 27,198,505UniSTSRGSC3.4
Celera1126,427,434 - 26,427,595UniSTS
RH 3.4 Map11135.7UniSTS
Cytogenetic Map11q11UniSTS
RH137839  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21126,667,889 - 26,668,054 (+)MAPPERmRatBN7.2
Rnor_6.01127,087,716 - 27,087,880NCBIRnor6.0
Rnor_5.01130,713,164 - 30,713,328UniSTSRnor5.0
RGSC_v3.41127,191,252 - 27,191,416UniSTSRGSC3.4
Celera1126,420,333 - 26,420,497UniSTS
RH 3.4 Map11123.5UniSTS
Cytogenetic Map11q11UniSTS
AW530724  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21126,665,903 - 26,666,106 (+)MAPPERmRatBN7.2
Rnor_6.01127,085,730 - 27,085,932NCBIRnor6.0
Rnor_5.01130,711,178 - 30,711,380UniSTSRnor5.0
RGSC_v3.41127,189,266 - 27,189,468UniSTSRGSC3.4
Celera1126,418,347 - 26,418,549UniSTS
RH 3.4 Map11136.5UniSTS
Cytogenetic Map11q11UniSTS
AU048633  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21126,671,770 - 26,672,022 (+)MAPPERmRatBN7.2
Rnor_6.01127,091,593 - 27,091,844NCBIRnor6.0
Rnor_5.01130,717,041 - 30,717,292UniSTSRnor5.0
RGSC_v3.41127,195,129 - 27,195,380UniSTSRGSC3.4
Celera1126,424,225 - 26,424,474UniSTS
Cytogenetic Map11q11UniSTS
UniSTS:259643  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21126,668,667 - 26,669,475 (+)MAPPERmRatBN7.2
Rnor_6.01127,088,494 - 27,089,301NCBIRnor6.0
Rnor_5.01130,713,942 - 30,714,749UniSTSRnor5.0
RGSC_v3.41127,192,030 - 27,192,837UniSTSRGSC3.4
Celera1126,421,111 - 26,421,933UniSTS
Cytogenetic Map11q11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:153
Count of miRNA genes:123
Interacting mature miRNAs:137
Transcripts:ENSRNOT00000050902
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 4 27 27 27 70 34 20 2
Low 39 30 14 19 14 8 11 4 1 21 9 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000050902   ⟹   ENSRNOP00000039159
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1126,665,877 - 26,674,603 (-)Ensembl
Rnor_6.0 Ensembl1127,085,711 - 27,094,364 (-)Ensembl
RefSeq Acc Id: NM_001100559   ⟹   NP_001094029
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21126,665,882 - 26,674,544 (-)NCBI
Rnor_6.01127,085,708 - 27,094,364 (-)NCBI
Rnor_5.01130,711,156 - 30,719,812 (-)NCBI
RGSC_v3.41127,189,244 - 27,197,900 (-)RGD
Celera1126,418,325 - 26,426,990 (-)RGD
Sequence:
RefSeq Acc Id: XM_039088441   ⟹   XP_038944369
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21126,665,877 - 26,677,986 (-)NCBI
RefSeq Acc Id: XM_039088442   ⟹   XP_038944370
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21126,665,877 - 26,674,342 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001094029 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944369 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944370 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH91390 (Get FASTA)   NCBI Sequence Viewer  
  AAI61911 (Get FASTA)   NCBI Sequence Viewer  
  EDM10640 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001094029   ⟸   NM_001100559
- UniProtKB: B1WBW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000039159   ⟸   ENSRNOT00000050902
RefSeq Acc Id: XP_038944369   ⟸   XM_039088441
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944370   ⟸   XM_039088442
- Peptide Label: isoform X1
Protein Domains
RWD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1WBW2-F1-model_v2 AlphaFold B1WBW2 1-290 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698022
Promoter ID:EPDNEW_R8546
Type:multiple initiation site
Name:Rwdd2b_1
Description:RWD domain containing 2B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01127,094,377 - 27,094,437EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305062 AgrOrtholog
BioCyc Gene G2FUF-22055 BioCyc
Ensembl Genes ENSRNOG00000001599 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000039159 ENTREZGENE
  ENSRNOP00000039159.3 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050902 ENTREZGENE
  ENSRNOT00000050902.4 UniProtKB/TrEMBL
Gene3D-CATH 3.10.110.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7321544 IMAGE-MGC_LOAD
  IMAGE:8368806 IMAGE-MGC_LOAD
InterPro DUF1115 UniProtKB/TrEMBL
  RWD-domain UniProtKB/TrEMBL
  UBQ-conjugating_enzyme/RWD UniProtKB/TrEMBL
  UCP038021_RWD UniProtKB/TrEMBL
KEGG Report rno:304132 UniProtKB/TrEMBL
MGC_CLONE MGC:109476 IMAGE-MGC_LOAD
  MGC:187639 IMAGE-MGC_LOAD
NCBI Gene 304132 ENTREZGENE
PANTHER PTHR15955 UniProtKB/TrEMBL
Pfam DUF1115 UniProtKB/TrEMBL
  RWD UniProtKB/TrEMBL
PhenoGen Rwdd2b PhenoGen
PIRSF UCP038021_RWDD2 UniProtKB/TrEMBL
PROSITE RWD UniProtKB/TrEMBL
SMART RWD UniProtKB/TrEMBL
Superfamily-SCOP UBQ-conjugat/RWD-like UniProtKB/TrEMBL
UniProt B1WBW2 ENTREZGENE, UniProtKB/TrEMBL
  Q5BJP8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Rwdd2b  RWD domain containing 2B  RGD1305062  similar to open reading frame 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1305062  similar to open reading frame 5  RGD1305062_predicted  similar to open reading frame 5 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1305062_predicted  similar to open reading frame 5 (predicted)  LOC304132_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC304132_predicted  similar to open reading frame 5 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL