Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Disease Progression | | ISO | ABCF2 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:22294766 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Disease Progression | | ISO | ABCF2 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:22294766 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
3. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
4. | GOA pipeline | RGD automated data pipeline |
5. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
6. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Abcf2 (Rattus norvegicus - Norway rat) |
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ABCF2 (Homo sapiens - human) |
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Abcf2 (Mus musculus - house mouse) |
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Abcf2 (Chinchilla lanigera - long-tailed chinchilla) |
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ABCF2 (Pan paniscus - bonobo/pygmy chimpanzee) |
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ABCF2 (Canis lupus familiaris - dog) |
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LOC101956755 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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ABCF2 (Sus scrofa - pig) |
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ABCF2 (Chlorocebus sabaeus - green monkey) |
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Abcf2 (Heterocephalus glaber - naked mole-rat) |
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Variants in Abcf2
74 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
D13Ertd614e |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 43 | 56 | 40 | 19 | 40 | 8 | 11 | 74 | 35 | 41 | 11 | 8 |
Low | 1 | 1 | 1 | ||||||||||
Below cutoff |
RefSeq Transcripts | NM_001398837 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001398838 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001398839 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NR_174136 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NR_174137 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006235930 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006235934 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039107495 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039107496 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063285942 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063285944 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063285945 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063285946 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC099360 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BC129119 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH474020 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000004 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000014718 ⟹ ENSRNOP00000014718 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000075906 ⟹ ENSRNOP00000067955 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000076051 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000076339 ⟹ ENSRNOP00000068127 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000076418 ⟹ ENSRNOP00000067893 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000088399 ⟹ ENSRNOP00000074076 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001398837 ⟹ NP_001385766 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001398838 ⟹ NP_001385767 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001398839 ⟹ NP_001385768 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NR_174136 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NR_174137 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_006235930 ⟹ XP_006235992 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006235934 ⟹ XP_006235996 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039107495 ⟹ XP_038963423 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039107496 ⟹ XP_038963424 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063285942 ⟹ XP_063142012 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063285944 ⟹ XP_063142014 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063285945 ⟹ XP_063142015 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063285946 ⟹ XP_063142016 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001385766 | (Get FASTA) | NCBI Sequence Viewer |
NP_001385767 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001385768 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006235992 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006235996 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038963423 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038963424 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063142012 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063142014 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063142015 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063142016 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAI29120 | (Get FASTA) | NCBI Sequence Viewer |
EDL99346 | (Get FASTA) | NCBI Sequence Viewer | |
EDL99347 | (Get FASTA) | NCBI Sequence Viewer | |
EDL99348 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000067893 | ||
ENSRNOP00000067893.2 | |||
ENSRNOP00000074076 | |||
ENSRNOP00000074076.2 |
RefSeq Acc Id: | XP_006235996 ⟸ XM_006235934 |
- Peptide Label: | isoform X4 |
- UniProtKB: | A0A096MIV5 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006235992 ⟸ XM_006235930 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A096MIV5 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000014718 ⟸ ENSRNOT00000014718 |
RefSeq Acc Id: | ENSRNOP00000067955 ⟸ ENSRNOT00000075906 |
RefSeq Acc Id: | ENSRNOP00000074076 ⟸ ENSRNOT00000088399 |
RefSeq Acc Id: | ENSRNOP00000068127 ⟸ ENSRNOT00000076339 |
RefSeq Acc Id: | ENSRNOP00000067893 ⟸ ENSRNOT00000076418 |
RefSeq Acc Id: | XP_038963424 ⟸ XM_039107496 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A0A0G2K762 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038963423 ⟸ XM_039107495 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A2VD14 (UniProtKB/TrEMBL), A0A0G2K762 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | NP_001385766 ⟸ NM_001398837 |
- Peptide Label: | isoform 1 |
- UniProtKB: | A0A096MIV5 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | NP_001385767 ⟸ NM_001398838 |
- Peptide Label: | isoform 2 |
- UniProtKB: | A0A096MIV5 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | NP_001385768 ⟸ NM_001398839 |
- Peptide Label: | isoform 3 |
- UniProtKB: | A2VD14 (UniProtKB/TrEMBL), A0A0G2K762 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063142014 ⟸ XM_063285944 |
- Peptide Label: | isoform X5 |
RefSeq Acc Id: | XP_063142015 ⟸ XM_063285945 |
- Peptide Label: | isoform X6 |
RefSeq Acc Id: | XP_063142016 ⟸ XM_063285946 |
- Peptide Label: | isoform X7 |
RefSeq Acc Id: | XP_063142012 ⟸ XM_063285942 |
- Peptide Label: | isoform X4 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-A0A096MIV5-F1-model_v2 | AlphaFold | A0A096MIV5 | 1-627 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13692787 | ||||||||
Promoter ID: | EPDNEW_R3310 | ||||||||
Type: | initiation region | ||||||||
Name: | Abcf2_1 | ||||||||
Description: | ATP binding cassette subfamily F member 2 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1304942 | AgrOrtholog |
BioCyc Gene | G2FUF-46050 | BioCyc |
Ensembl Genes | ENSRNOG00000010609 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000076418 | ENTREZGENE |
ENSRNOT00000076418.3 | UniProtKB/TrEMBL | |
ENSRNOT00000088399.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.40.50.300 | UniProtKB/TrEMBL |
IMAGE_CLONE | IMAGE:7115823 | IMAGE-MGC_LOAD |
InterPro | ABC_tran_Xtn | UniProtKB/TrEMBL |
ABC_transporter-like | UniProtKB/TrEMBL | |
ABC_transporter_CS | UniProtKB/TrEMBL | |
ATPase_AAA+_core | UniProtKB/TrEMBL | |
P-loop_NTPase | UniProtKB/TrEMBL | |
MGC_CLONE | MGC:156772 | IMAGE-MGC_LOAD |
NCBI Gene | 311959 | ENTREZGENE |
PANTHER | ATP-BINDING CASSETTE SUB-FAMILY F MEMBER 2 | UniProtKB/TrEMBL |
ATP-BINDING TRANSPORT PROTEIN-RELATED | UniProtKB/TrEMBL | |
Pfam | ABC_tran | UniProtKB/TrEMBL |
ABC_tran_Xtn | UniProtKB/TrEMBL | |
PhenoGen | Abcf2 | PhenoGen |
PROSITE | ABC_TRANSPORTER_1 | UniProtKB/TrEMBL |
ABC_TRANSPORTER_2 | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000010609 | RatGTEx |
SMART | AAA | UniProtKB/TrEMBL |
Superfamily-SCOP | SSF52540 | UniProtKB/TrEMBL |
UniProt | A0A096MIV5 | ENTREZGENE, UniProtKB/TrEMBL |
A0A0G2K762 | ENTREZGENE, UniProtKB/TrEMBL | |
A2VD14 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2015-12-09 | Abcf2 | ATP binding cassette subfamily F member 2 | Abcf2 | ATP-binding cassette, subfamily F (GCN20), member 2 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2010-11-16 | Abcf2 | ATP-binding cassette, subfamily F (GCN20), member 2 | Abcf2 | ATP-binding cassette, sub-family F (GCN20), member 2 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-04-30 | Abcf2 | ATP-binding cassette, sub-family F (GCN20), member 2 | Abcf2_predicted | ATP-binding cassette, sub-family F (GCN20), member 2 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-12 | Abcf2_predicted | ATP-binding cassette, sub-family F (GCN20), member 2 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |