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Gene: Xirp1 (xin actin-binding repeat containing 1) Rattus norvegicus
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Symbol: Xirp1
Name: xin actin-binding repeat containing 1
Description: Predicted to have actin filament binding activity. Predicted to be involved in several processes, including Notch signaling pathway; negative regulation of protein binding activity; and striated muscle cell development. Predicted to colocalize with the focal adhesion and stress fiber. Orthologous to human XIRP1 (xin actin binding repeat containing 1); INTERACTS WITH 1,3-dinitrobenzene; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Also known as: cardiomyopathy associated 1; Cmya1; LOC100910104; LOC316071; xin actin-binding repeat-containing protein 1; xin actin-binding repeat-containing protein 1-like
Orthologs:
Homo sapiens (human) : XIRP1 (xin actin binding repeat containing 1)  HGNC  Alliance
Mus musculus (house mouse) : Xirp1 (xin actin-binding repeat containing 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Xirp1 (xin actin binding repeat containing 1)
Pan paniscus (bonobo/pygmy chimpanzee) : XIRP1 (xin actin binding repeat containing 1)
Canis lupus familiaris (dog) : XIRP1 (xin actin binding repeat containing 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Xirp1 (xin actin binding repeat containing 1)
Sus scrofa (pig) : XIRP1 (xin actin binding repeat containing 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08128,694,809 - 128,712,092 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8128,702,133 - 128,711,221 (-)Ensembl
Rnor_5.08127,903,077 - 127,912,966 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48124,995,308 - 125,001,397 (-)NCBIRGSC3.4rn4RGSC3.4
Celera8118,886,557 - 118,903,852 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Xirp1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1304776
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.