Ints10 (integrator complex subunit 10) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ints10 (integrator complex subunit 10) Rattus norvegicus
Analyze
Symbol: Ints10
Name: integrator complex subunit 10
RGD ID: 1304711
Description: Predicted to be involved in snRNA processing. Predicted to be located in nucleus. Predicted to be part of integrator complex. Orthologous to human INTS10 (integrator complex subunit 10); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC290679; RGD1304711; similar to RIKEN cDNA 4921521J11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81625,682,818 - 25,735,840 (-)NCBIGRCr8
mRatBN7.21620,915,223 - 20,947,146 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1620,916,082 - 20,967,610 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1624,292,018 - 24,323,084 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01627,719,678 - 27,750,732 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01623,657,327 - 23,688,391 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01622,616,480 - 22,647,315 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1622,617,388 - 22,647,506 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01622,511,869 - 22,542,494 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41621,907,203 - 21,938,144 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11621,906,825 - 21,938,590 (-)NCBI
Celera1621,076,200 - 21,107,053 (-)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
snRNA processing  (IBA,ISO)

Cellular Component
integrator complex  (IBA,ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16239144   PMID:23904267  


Genomics

Comparative Map Data
Ints10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81625,682,818 - 25,735,840 (-)NCBIGRCr8
mRatBN7.21620,915,223 - 20,947,146 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1620,916,082 - 20,967,610 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1624,292,018 - 24,323,084 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01627,719,678 - 27,750,732 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01623,657,327 - 23,688,391 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01622,616,480 - 22,647,315 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1622,617,388 - 22,647,506 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01622,511,869 - 22,542,494 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41621,907,203 - 21,938,144 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11621,906,825 - 21,938,590 (-)NCBI
Celera1621,076,200 - 21,107,053 (-)NCBICelera
Cytogenetic Map16p14NCBI
INTS10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38819,817,416 - 19,852,067 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl819,817,391 - 19,852,083 (+)EnsemblGRCh38hg38GRCh38
GRCh37819,674,927 - 19,709,578 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36819,719,198 - 19,753,869 (+)NCBINCBI36Build 36hg18NCBI36
Celera818,638,388 - 18,673,063 (+)NCBICelera
Cytogenetic Map8p21.3NCBI
HuRef818,215,135 - 18,249,811 (+)NCBIHuRef
CHM1_1819,876,482 - 19,911,153 (+)NCBICHM1_1
T2T-CHM13v2.0820,082,438 - 20,117,090 (+)NCBIT2T-CHM13v2.0
Ints10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39869,245,729 - 69,282,062 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl869,246,581 - 69,284,319 (+)EnsemblGRCm39 Ensembl
GRCm38868,793,929 - 68,829,410 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl868,793,929 - 68,831,667 (+)EnsemblGRCm38mm10GRCm38
MGSCv37871,317,853 - 71,351,543 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36871,722,943 - 71,756,633 (+)NCBIMGSCv36mm8
MGSCv36868,185,412 - 68,219,098 (+)NCBIMGSCv36mm8
Celera871,340,629 - 71,371,287 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map833.88NCBI
Ints10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540343,519,239 - 43,549,990 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540343,519,239 - 43,546,209 (+)NCBIChiLan1.0ChiLan1.0
INTS10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2738,298,972 - 38,333,909 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1814,024,524 - 14,059,457 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0819,042,611 - 19,077,539 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1815,991,599 - 16,026,516 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl815,991,599 - 16,026,522 (+)Ensemblpanpan1.1panPan2
INTS10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11622,606,954 - 22,636,514 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1622,423,640 - 22,636,511 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1623,112,152 - 23,141,711 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01624,358,684 - 24,388,207 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1624,358,703 - 24,388,207 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11622,727,085 - 22,756,578 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01623,291,765 - 23,321,281 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01623,343,014 - 23,372,537 (+)NCBIUU_Cfam_GSD_1.0
Ints10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494314,552,080 - 14,585,143 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365553,985,447 - 4,018,450 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365553,985,363 - 4,018,421 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INTS10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1712,034,062 - 12,087,884 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11712,042,317 - 12,087,820 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2179,711,445 - 9,756,335 (-)NCBISscrofa10.2Sscrofa10.2susScr3
INTS10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1817,908,632 - 17,943,025 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl817,908,385 - 17,943,011 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605224,304,734 - 24,339,736 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ints10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475815,551,778 - 15,581,070 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ints10
83 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:25
Interacting mature miRNAs:26
Transcripts:ENSRNOT00000016980
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161572643321034895Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat

Markers in Region
RH132786  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21620,918,828 - 20,919,023 (+)MAPPERmRatBN7.2
Rnor_6.01622,620,086 - 22,620,280NCBIRnor6.0
Rnor_5.01622,514,621 - 22,514,815UniSTSRnor5.0
RGSC_v3.41621,909,955 - 21,910,149UniSTSRGSC3.4
Celera1621,078,952 - 21,079,146UniSTS
RH 3.4 Map16254.73UniSTS
Cytogenetic Map16p14UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 28 43 27 19 27 1 1 74 35 41 11 1
Low 15 14 14 14 7 10 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC166856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB807605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000087027   ⟹   ENSRNOP00000075205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1620,916,082 - 20,947,379 (-)Ensembl
Rnor_6.0 Ensembl1622,617,567 - 22,647,241 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091335   ⟹   ENSRNOP00000074576
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1620,916,084 - 20,967,610 (-)Ensembl
Rnor_6.0 Ensembl1622,617,388 - 22,647,506 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106088   ⟹   ENSRNOP00000093524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1620,916,082 - 20,947,379 (-)Ensembl
RefSeq Acc Id: NM_001134416   ⟹   NP_001127888
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81625,682,818 - 25,713,845 (-)NCBI
mRatBN7.21620,916,077 - 20,947,104 (-)NCBI
Rnor_6.01622,617,334 - 22,647,267 (-)NCBI
Rnor_5.01622,511,869 - 22,542,494 (-)NCBI
RGSC_v3.41621,907,203 - 21,938,144 (-)RGD
Celera1621,076,200 - 21,107,053 (-)RGD
Sequence:
RefSeq Acc Id: XM_039094348   ⟹   XP_038950276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81625,682,823 - 25,713,893 (-)NCBI
mRatBN7.21620,915,223 - 20,947,146 (-)NCBI
RefSeq Acc Id: XM_039094349   ⟹   XP_038950277
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81625,682,823 - 25,713,893 (-)NCBI
mRatBN7.21620,915,223 - 20,947,145 (-)NCBI
RefSeq Acc Id: XM_039094350   ⟹   XP_038950278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81625,682,823 - 25,713,893 (-)NCBI
mRatBN7.21620,915,223 - 20,947,145 (-)NCBI
RefSeq Acc Id: XM_039094351   ⟹   XP_038950279
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81625,682,823 - 25,713,893 (-)NCBI
mRatBN7.21620,915,223 - 20,947,145 (-)NCBI
RefSeq Acc Id: XM_039094352   ⟹   XP_038950280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81625,682,823 - 25,713,893 (-)NCBI
mRatBN7.21620,915,223 - 20,947,145 (-)NCBI
RefSeq Acc Id: XM_039094353   ⟹   XP_038950281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81625,682,823 - 25,713,893 (-)NCBI
mRatBN7.21620,915,223 - 20,947,145 (-)NCBI
RefSeq Acc Id: XM_039094355   ⟹   XP_038950283
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81625,682,823 - 25,713,893 (-)NCBI
mRatBN7.21620,915,223 - 20,947,144 (-)NCBI
RefSeq Acc Id: XM_039094357   ⟹   XP_038950285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81625,682,823 - 25,704,335 (-)NCBI
mRatBN7.21620,915,223 - 20,937,593 (-)NCBI
RefSeq Acc Id: XM_063275210   ⟹   XP_063131280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81625,682,823 - 25,735,840 (-)NCBI
RefSeq Acc Id: XM_063275212   ⟹   XP_063131282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81625,690,918 - 25,713,893 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001127888   ⟸   NM_001134416
- UniProtKB: B2RYP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075205   ⟸   ENSRNOT00000087027
RefSeq Acc Id: ENSRNOP00000074576   ⟸   ENSRNOT00000091335
RefSeq Acc Id: XP_038950276   ⟸   XM_039094348
- Peptide Label: isoform X1
- UniProtKB: B2RYP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950280   ⟸   XM_039094352
- Peptide Label: isoform X5
- UniProtKB: B2RYP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950281   ⟸   XM_039094353
- Peptide Label: isoform X6
- UniProtKB: B2RYP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950277   ⟸   XM_039094349
- Peptide Label: isoform X2
- UniProtKB: B2RYP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950278   ⟸   XM_039094350
- Peptide Label: isoform X3
- UniProtKB: B2RYP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950279   ⟸   XM_039094351
- Peptide Label: isoform X4
- UniProtKB: B2RYP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950283   ⟸   XM_039094355
- Peptide Label: isoform X7
- UniProtKB: B2RYP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950285   ⟸   XM_039094357
- Peptide Label: isoform X10
- UniProtKB: A6KFJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000093524   ⟸   ENSRNOT00000106088
RefSeq Acc Id: XP_063131280   ⟸   XM_063275210
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063131282   ⟸   XM_063275212
- Peptide Label: isoform X9

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700058
Promoter ID:EPDNEW_R10582
Type:initiation region
Name:Ints10_1
Description:integrator complex subunit 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01622,647,275 - 22,647,335EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304711 AgrOrtholog
BioCyc Gene G2FUF-11695 BioCyc
Ensembl Genes ENSRNOG00000055331 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000087027.2 UniProtKB/TrEMBL
  ENSRNOT00000091335.2 UniProtKB/TrEMBL
  ENSRNOT00000106088 ENTREZGENE
  ENSRNOT00000106088.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9099642 IMAGE-MGC_LOAD
InterPro Int_cplx_su10 UniProtKB/TrEMBL
KEGG Report rno:290679 UniProtKB/TrEMBL
MGC_CLONE MGC:188763 IMAGE-MGC_LOAD
NCBI Gene 290679 ENTREZGENE
PANTHER INTEGRATOR COMPLEX SUBUNIT 10 UniProtKB/TrEMBL
  PTHR16055 UniProtKB/TrEMBL
Pfam INT10 UniProtKB/TrEMBL
PhenoGen Ints10 PhenoGen
PRINTS INTSUBUNIT10 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000055331 RatGTEx
UniProt A0A0G2K8E5_RAT UniProtKB/TrEMBL
  A0A0G2KA04_RAT UniProtKB/TrEMBL
  A0A8I6ALJ1_RAT UniProtKB/TrEMBL
  A6KFJ1 ENTREZGENE, UniProtKB/TrEMBL
  B2RYP7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Ints10  integrator complex subunit 10  RGD1304711_predicted  similar to RIKEN cDNA 4921521J11 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1304711_predicted  similar to RIKEN cDNA 4921521J11 (predicted)  LOC290679_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC290679_predicted  similar to RIKEN cDNA 4921521J11 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL