Lpin2 (lipin 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Lpin2 (lipin 2) Rattus norvegicus
Analyze
Symbol: Lpin2
Name: lipin 2
RGD ID: 1304588
Description: Predicted to enable phosphatidate phosphatase activity and transcription coactivator activity. Predicted to be involved in several processes, including cellular response to insulin stimulus; fatty acid catabolic process; and triglyceride biosynthetic process. Predicted to be active in cytosol; endoplasmic reticulum membrane; and nucleus. Orthologous to human LPIN2 (lipin 2); INTERACTS WITH 1,2-dimethylhydrazine; 1-naphthyl isothiocyanate; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC316737; phosphatidate phosphatase LPIN2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29111,083,378 - 111,158,193 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9111,083,745 - 111,158,193 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9119,477,330 - 119,551,212 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.09124,606,892 - 124,680,761 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.09122,943,299 - 123,017,170 (+)NCBIRnor_WKY
Rnor_6.09119,517,101 - 119,591,533 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9119,517,101 - 119,591,533 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09118,970,173 - 119,045,052 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49110,380,692 - 110,484,329 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19110,556,496 - 110,662,140 (+)NCBI
Celera9108,213,668 - 108,287,163 (+)NCBICelera
Cytogenetic Map9q38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (EXP,ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-(4-chlorophenyl)imidazo[2,1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
dichloroacetic acid  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
fenthion  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
GW 4064  (ISO)
Indeno[1,2,3-cd]pyrene  (ISO)
indole-3-methanol  (EXP)
lovastatin  (ISO)
metformin  (EXP)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
microcystin-LR  (ISO)
N-methylformamide  (ISO)
obeticholic acid  (ISO)
oleic acid  (ISO)
orphenadrine  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP,ISO)
parathion  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
rac-lactic acid  (ISO)
resveratrol  (EXP)
rotenone  (EXP)
Salinomycin  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
streptozocin  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
zinc sulfate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17158099   PMID:18694939   PMID:19717560   PMID:23505321  


Genomics

Comparative Map Data
Lpin2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29111,083,378 - 111,158,193 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9111,083,745 - 111,158,193 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9119,477,330 - 119,551,212 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.09124,606,892 - 124,680,761 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.09122,943,299 - 123,017,170 (+)NCBIRnor_WKY
Rnor_6.09119,517,101 - 119,591,533 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9119,517,101 - 119,591,533 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09118,970,173 - 119,045,052 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49110,380,692 - 110,484,329 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19110,556,496 - 110,662,140 (+)NCBI
Celera9108,213,668 - 108,287,163 (+)NCBICelera
Cytogenetic Map9q38NCBI
LPIN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38182,916,994 - 3,013,144 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl182,885,296 - 3,013,144 (-)EnsemblGRCh38hg38GRCh38
GRCh37182,916,992 - 3,013,142 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36182,906,992 - 3,001,945 (-)NCBINCBI36Build 36hg18NCBI36
Build 34182,906,992 - 3,001,945NCBI
Celera182,792,438 - 2,887,255 (-)NCBICelera
Cytogenetic Map18p11.31NCBI
HuRef182,878,273 - 2,973,028 (-)NCBIHuRef
CHM1_1182,916,356 - 3,011,234 (-)NCBICHM1_1
T2T-CHM13v2.0183,072,495 - 3,168,675 (-)NCBIT2T-CHM13v2.0
Lpin2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391771,490,527 - 71,556,813 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1771,489,555 - 71,556,812 (+)EnsemblGRCm39 Ensembl
GRCm381771,183,532 - 71,249,818 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1771,182,560 - 71,249,817 (+)EnsemblGRCm38mm10GRCm38
MGSCv371771,533,318 - 71,599,158 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361771,109,525 - 71,153,086 (+)NCBIMGSCv36mm8
Celera1775,451,935 - 75,517,734 (+)NCBICelera
Cytogenetic Map17E1.3NCBI
Lpin2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554027,472,538 - 7,504,231 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554027,457,408 - 7,505,829 (+)NCBIChiLan1.0ChiLan1.0
LPIN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11813,586,801 - 13,675,170 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1813,608,883 - 13,675,165 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01811,270,941 - 11,367,312 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
LPIN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1769,583,386 - 69,664,226 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl769,580,736 - 69,673,899 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha769,038,655 - 69,119,523 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0769,645,593 - 69,726,459 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl769,645,597 - 69,726,438 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1769,327,908 - 69,408,884 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0769,347,982 - 69,428,812 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0769,645,434 - 69,726,575 (-)NCBIUU_Cfam_GSD_1.0
Lpin2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494465,935,673 - 65,990,966 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366721,568,732 - 1,602,931 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049366721,550,865 - 1,606,268 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LPIN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6103,687,743 - 103,728,148 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16103,625,725 - 103,728,151 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap6qNCBI
LPIN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11862,152,837 - 62,265,992 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1862,177,246 - 62,236,593 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605037,029,173 - 37,122,493 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lpin2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477013,159,903 - 13,203,643 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477013,158,111 - 13,200,818 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lpin2
224 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1221
Count of miRNA genes:341
Interacting mature miRNAs:468
Transcripts:ENSRNOT00000020476
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat

Markers in Region
Lpin2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29111,155,134 - 111,155,259 (+)MAPPERmRatBN7.2
Rnor_6.09119,588,475 - 119,588,599NCBIRnor6.0
Rnor_5.09119,041,994 - 119,042,118UniSTSRnor5.0
RGSC_v3.49110,452,617 - 110,452,741UniSTSRGSC3.4
Celera9108,284,105 - 108,284,229UniSTS
Cytogenetic Map9q38UniSTS
RH130840  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29111,160,755 - 111,160,952 (+)MAPPERmRatBN7.2
Rnor_6.09119,594,096 - 119,594,292NCBIRnor6.0
Rnor_5.09119,047,615 - 119,047,811UniSTSRnor5.0
RGSC_v3.49110,458,112 - 110,458,308UniSTSRGSC3.4
Celera9108,289,727 - 108,289,923UniSTS
RH 3.4 Map9868.3UniSTS
Cytogenetic Map9q38UniSTS
BF393806  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29111,120,278 - 111,120,494 (+)MAPPERmRatBN7.2
Rnor_6.09119,553,643 - 119,553,858NCBIRnor6.0
Rnor_5.09119,006,855 - 119,007,070UniSTSRnor5.0
RGSC_v3.49110,417,771 - 110,417,986UniSTSRGSC3.4
Celera9108,249,243 - 108,249,458UniSTS
RH 3.4 Map9871.0UniSTS
Cytogenetic Map9q38UniSTS
RH139603  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29111,156,362 - 111,156,562 (+)MAPPERmRatBN7.2
Rnor_6.09119,589,703 - 119,589,902NCBIRnor6.0
Rnor_5.09119,043,222 - 119,043,421UniSTSRnor5.0
RGSC_v3.49110,454,449 - 110,454,648UniSTSRGSC3.4
Celera9108,285,333 - 108,285,532UniSTS
RH 3.4 Map9869.2UniSTS
Cytogenetic Map9q38UniSTS
RH140462  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29111,156,397 - 111,156,562 (+)MAPPERmRatBN7.2
Rnor_6.09119,589,738 - 119,589,902NCBIRnor6.0
Rnor_5.09119,043,257 - 119,043,421UniSTSRnor5.0
RGSC_v3.49110,454,484 - 110,454,648UniSTSRGSC3.4
Celera9108,285,368 - 108,285,532UniSTS
Cytogenetic Map9q38UniSTS
RH140803  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29111,157,865 - 111,157,987 (+)MAPPERmRatBN7.2
Rnor_6.09119,591,206 - 119,591,327NCBIRnor6.0
Rnor_5.09119,044,725 - 119,044,846UniSTSRnor5.0
Celera9108,286,836 - 108,286,957UniSTS
RH 3.4 Map9871.1UniSTS
Cytogenetic Map9q38UniSTS
AW529903  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29111,137,486 - 111,137,637 (+)MAPPERmRatBN7.2
Rnor_6.09119,570,848 - 119,570,998NCBIRnor6.0
Rnor_5.09119,024,060 - 119,024,210UniSTSRnor5.0
RGSC_v3.49110,434,983 - 110,435,133UniSTSRGSC3.4
Celera9108,266,454 - 108,266,604UniSTS
RH 3.4 Map9867.1UniSTS
Cytogenetic Map9q38UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 18 49 39 19 39 74 35 34 11
Low 25 8 2 2 8 11 7 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000020476   ⟹   ENSRNOP00000020476
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9111,083,745 - 111,158,193 (+)Ensembl
Rnor_6.0 Ensembl9119,517,101 - 119,591,533 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082005   ⟹   ENSRNOP00000070532
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9111,109,011 - 111,158,193 (+)Ensembl
Rnor_6.0 Ensembl9119,542,328 - 119,588,715 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095983   ⟹   ENSRNOP00000078237
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9111,119,702 - 111,158,193 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113074   ⟹   ENSRNOP00000092729
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9111,083,745 - 111,158,193 (+)Ensembl
RefSeq Acc Id: NM_001108236   ⟹   NP_001101706
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29111,083,745 - 111,158,193 (+)NCBI
Rnor_6.09119,517,101 - 119,591,533 (+)NCBI
Rnor_5.09118,970,173 - 119,045,052 (+)NCBI
RGSC_v3.49110,380,692 - 110,484,329 (+)RGD
Celera9108,213,668 - 108,287,163 (+)RGD
Sequence:
RefSeq Acc Id: XM_006245662   ⟹   XP_006245724
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29111,105,693 - 111,158,193 (+)NCBI
Rnor_6.09119,540,193 - 119,591,533 (+)NCBI
Rnor_5.09118,970,173 - 119,045,052 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245663   ⟹   XP_006245725
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29111,105,693 - 111,158,193 (+)NCBI
Rnor_6.09119,540,192 - 119,591,533 (+)NCBI
Rnor_5.09118,970,173 - 119,045,052 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245664   ⟹   XP_006245726
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29111,119,398 - 111,158,193 (+)NCBI
Rnor_6.09119,552,636 - 119,591,533 (+)NCBI
Rnor_5.09118,970,173 - 119,045,052 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245665   ⟹   XP_006245727
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29111,105,693 - 111,158,193 (+)NCBI
Rnor_6.09119,540,192 - 119,591,533 (+)NCBI
Rnor_5.09118,970,173 - 119,045,052 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083794   ⟹   XP_038939722
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29111,083,385 - 111,158,193 (+)NCBI
RefSeq Acc Id: XM_039083795   ⟹   XP_038939723
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29111,083,378 - 111,158,193 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001101706   ⟸   NM_001108236
- UniProtKB: D3ZYB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245727   ⟸   XM_006245665
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006245725   ⟸   XM_006245663
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006245724   ⟸   XM_006245662
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JY62 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245726   ⟸   XM_006245664
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000070532   ⟸   ENSRNOT00000082005
RefSeq Acc Id: ENSRNOP00000020476   ⟸   ENSRNOT00000020476
RefSeq Acc Id: XP_038939723   ⟸   XM_039083795
- Peptide Label: isoform X4
- UniProtKB: D3ZYB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939722   ⟸   XM_039083794
- Peptide Label: isoform X4
- UniProtKB: D3ZYB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000078237   ⟸   ENSRNOT00000095983
RefSeq Acc Id: ENSRNOP00000092729   ⟸   ENSRNOT00000113074
Protein Domains
LNS2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JY62-F1-model_v2 AlphaFold A0A0G2JY62 1-932 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696913
Promoter ID:EPDNEW_R7437
Type:multiple initiation site
Name:Lpin2_1
Description:lipin 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.09119,542,383 - 119,542,443EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304588 AgrOrtholog
BioCyc Gene G2FUF-26333 BioCyc
BioCyc Pathway PWY-7782 [plasmalogen biosynthesis] BioCyc
  PWY-8052 [2-arachidonoylglycerol biosynthesis] BioCyc
  PWY-8053 [anandamide biosynthesis II] BioCyc
  TRIGLSYN-PWY [diacylglycerol and triacylglycerol biosynthesis] BioCyc
Ensembl Genes ENSRNOG00000014876 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000020476 ENTREZGENE
  ENSRNOP00000020476.5 UniProtKB/TrEMBL
  ENSRNOP00000070532 ENTREZGENE
  ENSRNOP00000070532.1 UniProtKB/TrEMBL
  ENSRNOP00000078237.1 UniProtKB/TrEMBL
  ENSRNOP00000092729.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020476 ENTREZGENE
  ENSRNOT00000020476.8 UniProtKB/TrEMBL
  ENSRNOT00000082005 ENTREZGENE
  ENSRNOT00000082005.2 UniProtKB/TrEMBL
  ENSRNOT00000095983.1 UniProtKB/TrEMBL
  ENSRNOT00000113074.1 UniProtKB/TrEMBL
InterPro HAD-like_sf UniProtKB/TrEMBL
  LIPIN UniProtKB/TrEMBL
  Lipin_mid UniProtKB/TrEMBL
  Lipin_N UniProtKB/TrEMBL
  LNS2 UniProtKB/TrEMBL
  LNS2/PITP UniProtKB/TrEMBL
KEGG Report rno:316737 UniProtKB/TrEMBL
NCBI Gene 316737 ENTREZGENE
PANTHER PTHR12181 UniProtKB/TrEMBL
Pfam Lipin_mid UniProtKB/TrEMBL
  Lipin_N UniProtKB/TrEMBL
  LNS2 UniProtKB/TrEMBL
PhenoGen Lpin2 PhenoGen
SMART LNS2 UniProtKB/TrEMBL
Superfamily-SCOP HAD-like_dom UniProtKB/TrEMBL
UniProt A0A0G2JY62 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZKH7_RAT UniProtKB/TrEMBL
  A0A8I6AH46_RAT UniProtKB/TrEMBL
  D3ZYB4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Lpin2  lipin 2   Lpin2_predicted  lipin 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Lpin2_predicted  lipin 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED