Esrrg (estrogen-related receptor gamma) - Rat Genome Database

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Gene: Esrrg (estrogen-related receptor gamma) Rattus norvegicus
Analyze
Symbol: Esrrg
Name: estrogen-related receptor gamma
RGD ID: 1303236
Description: Predicted to enable several functions, including AF-2 domain binding activity; DNA-binding transcription factor activity, RNA polymerase II-specific; and estrogen response element binding activity. Predicted to be involved in positive regulation of cold-induced thermogenesis and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human ESRRG (estrogen related receptor gamma); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: errg; estrogen receptor-related protein 3; nuclear receptor subfamily 3 group B member 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21399,167,656 - 99,788,016 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1399,564,669 - 99,783,397 (+)Ensembl
Rnor_6.013106,063,799 - 106,683,353 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13106,463,368 - 106,683,436 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013110,713,353 - 111,328,942 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413103,794,661 - 104,405,301 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.113103,983,703 - 104,594,344 (+)NCBI
Celera1398,720,991 - 99,277,811 (+)NCBICelera
Cytogenetic Map13q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-di-tert-butylphenol  (ISO)
2-arachidonoylglycerol  (ISO)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-chloro-m-cresol  (ISO)
4-ethylphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-isopropylphenol  (ISO)
4-tert-butylphenol  (ISO)
4-tert-Octylphenol  (ISO)
5,6,7,8-tetrahydro-2-naphthol  (ISO)
8-Br-cAMP  (ISO)
afimoxifene  (EXP,ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
Benzo[ghi]perylene  (ISO)
Benzyl parahydroxybenzoate  (ISO)
biochanin A  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Butylparaben  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
daidzein  (ISO)
diarsenic trioxide  (ISO)
diethylstilbestrol  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
Ethyl salicylate  (ISO)
ethylparaben  (ISO)
fenthion  (ISO)
folic acid  (ISO)
furan  (EXP)
genistein  (ISO)
glyphosate  (EXP)
GSK 4716  (ISO)
lithium chloride  (ISO)
LY294002  (ISO)
methapyrilene  (ISO)
methyl salicylate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
nickel atom  (ISO)
O-methyleugenol  (ISO)
ochratoxin A  (ISO)
p-tert-Amylphenol  (ISO)
paracetamol  (EXP,ISO)
phenol red  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
propylparaben  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
tauroursodeoxycholic acid  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zalcitabine  (EXP)
zoledronic acid  (ISO)

References

Additional References at PubMed
PMID:10428842   PMID:12715898   PMID:15149736   PMID:17079227   PMID:21911493   PMID:23404793   PMID:23836911   PMID:26404484  


Genomics

Comparative Map Data
Esrrg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21399,167,656 - 99,788,016 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1399,564,669 - 99,783,397 (+)Ensembl
Rnor_6.013106,063,799 - 106,683,353 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13106,463,368 - 106,683,436 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013110,713,353 - 111,328,942 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413103,794,661 - 104,405,301 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.113103,983,703 - 104,594,344 (+)NCBI
Celera1398,720,991 - 99,277,811 (+)NCBICelera
Cytogenetic Map13q26NCBI
ESRRG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381216,503,246 - 217,137,702 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1216,503,246 - 217,137,755 (-)EnsemblGRCh38hg38GRCh38
GRCh371216,676,588 - 217,311,044 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361214,743,211 - 215,329,599 (-)NCBINCBI36hg18NCBI36
Build 341213,064,982 - 213,651,371NCBI
Celera1189,900,435 - 190,535,016 (-)NCBI
Cytogenetic Map1q41NCBI
HuRef1187,351,966 - 187,986,618 (-)NCBIHuRef
CHM1_11217,949,719 - 218,583,931 (-)NCBICHM1_1
Esrrg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391187,340,707 - 187,947,082 (+)NCBIGRCm39mm39
GRCm39 Ensembl1187,340,988 - 187,947,082 (+)Ensembl
GRCm381187,608,510 - 188,214,885 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1187,608,791 - 188,214,885 (+)EnsemblGRCm38mm10GRCm38
MGSCv371189,821,738 - 190,038,763 (+)NCBIGRCm37mm9NCBIm37
MGSCv361189,698,647 - 189,915,672 (+)NCBImm8
Celera1194,923,141 - 195,141,266 (+)NCBICelera
Cytogenetic Map1H5- H6NCBI
Esrrg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554061,560,485 - 1,788,250 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554061,260,240 - 1,784,652 (+)NCBIChiLan1.0ChiLan1.0
ESRRG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11196,929,197 - 197,508,064 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1196,929,197 - 197,153,195 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01192,074,260 - 192,667,610 (-)NCBIMhudiblu_PPA_v0panPan3
ESRRG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13811,825,055 - 12,439,143 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3811,823,520 - 12,256,028 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3811,862,256 - 12,476,998 (-)NCBI
ROS_Cfam_1.03811,851,190 - 12,466,509 (-)NCBI
ROS_Cfam_1.0 Ensembl3811,849,973 - 12,421,362 (-)Ensembl
UMICH_Zoey_3.13811,864,007 - 12,478,053 (-)NCBI
UNSW_CanFamBas_1.03812,216,132 - 12,830,227 (-)NCBI
UU_Cfam_GSD_1.03812,517,096 - 13,132,572 (-)NCBI
Esrrg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934459,454,088 - 60,048,171 (+)NCBI
SpeTri2.0NW_0049366281,635,161 - 2,058,198 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ESRRG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl106,712,841 - 7,030,063 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1106,710,615 - 7,371,419 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2108,646,197 - 8,720,519 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ESRRG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12512,495,234 - 13,090,739 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2512,866,321 - 13,090,733 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605512,918,159 - 13,515,132 (+)NCBIVero_WHO_p1.0
Esrrg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624835815,230 - 1,326,376 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D13Rat47  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21399,258,249 - 99,258,417 (+)MAPPERmRatBN7.2
Rnor_6.013106,156,025 - 106,156,192NCBIRnor6.0
Rnor_5.013110,802,823 - 110,802,990UniSTSRnor5.0
RGSC_v3.413103,828,388 - 103,828,555UniSTSRGSC3.4
RGSC_v3.413103,828,387 - 103,828,555RGDRGSC3.4
RGSC_v3.113104,017,431 - 104,017,598RGD
Celera1398,754,181 - 98,754,348UniSTS
RH 3.4 Map13669.2RGD
RH 3.4 Map13669.2UniSTS
RH 2.0 Map13728.0RGD
FHH x ACI Map1357.9RGD
Cytogenetic Map13q26UniSTS
D13Rat49  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21399,778,880 - 99,779,019 (+)MAPPERmRatBN7.2
Rnor_6.013106,676,710 - 106,676,848NCBIRnor6.0
Rnor_5.013111,322,467 - 111,322,605UniSTSRnor5.0
RGSC_v3.413104,400,153 - 104,400,291UniSTSRGSC3.4
RGSC_v3.413104,400,047 - 104,400,321RGDRGSC3.4
RGSC_v3.113104,589,196 - 104,589,334RGD
Celera1399,273,152 - 99,273,290UniSTS
RH 3.4 Map13682.5RGD
RH 3.4 Map13682.5UniSTS
RH 2.0 Map13730.3RGD
FHH x ACI Map1358.79RGD
Cytogenetic Map13q26UniSTS
D13Got95  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21399,438,205 - 99,438,312 (+)MAPPERmRatBN7.2
Rnor_6.013106,338,935 - 106,339,041NCBIRnor6.0
Rnor_5.013110,985,046 - 110,985,152UniSTSRnor5.0
RGSC_v3.413104,009,972 - 104,010,078UniSTSRGSC3.4
RGSC_v3.413104,009,971 - 104,010,078RGDRGSC3.4
RGSC_v3.113104,199,015 - 104,199,121RGD
Celera1398,933,677 - 98,933,783UniSTS
RH 3.4 Map13682.6RGD
RH 3.4 Map13682.6UniSTS
RH 2.0 Map13728.8RGD
Cytogenetic Map13q26UniSTS
D13Got94  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21399,399,358 - 99,399,487 (+)MAPPERmRatBN7.2
Rnor_6.013106,300,059 - 106,300,187NCBIRnor6.0
Rnor_5.013110,946,170 - 110,946,298UniSTSRnor5.0
RGSC_v3.413103,970,591 - 103,970,719UniSTSRGSC3.4
RGSC_v3.413103,970,590 - 103,970,719RGDRGSC3.4
RGSC_v3.113104,159,634 - 104,159,762RGD
Celera1398,895,394 - 98,895,522UniSTS
RH 3.4 Map13683.9RGD
RH 3.4 Map13683.9UniSTS
RH 2.0 Map13747.5RGD
Cytogenetic Map13q26UniSTS
AU048237  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21399,248,165 - 99,248,325 (+)MAPPERmRatBN7.2
Rnor_6.013106,145,941 - 106,146,100NCBIRnor6.0
Rnor_5.013110,792,739 - 110,792,898UniSTSRnor5.0
RGSC_v3.413103,818,304 - 103,818,463UniSTSRGSC3.4
Celera1398,744,111 - 98,744,270UniSTS
Cytogenetic Map13q26UniSTS
BE108002  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21399,560,440 - 99,560,645 (+)MAPPERmRatBN7.2
Rnor_6.013106,459,171 - 106,459,375NCBIRnor6.0
Rnor_5.013111,105,529 - 111,105,733UniSTSRnor5.0
RGSC_v3.413104,133,489 - 104,133,693UniSTSRGSC3.4
Celera1399,055,270 - 99,055,474UniSTS
RH 3.4 Map13683.2UniSTS
Cytogenetic Map13q26UniSTS
UniSTS:495942  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21399,608,638 - 99,608,729 (+)MAPPERmRatBN7.2
Rnor_6.013106,507,415 - 106,507,505NCBIRnor6.0
Rnor_5.013111,153,773 - 111,153,863UniSTSRnor5.0
RGSC_v3.413104,182,190 - 104,182,280UniSTSRGSC3.4
Celera1399,103,440 - 99,103,530UniSTS
Cytogenetic Map13q26UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:236
Count of miRNA genes:140
Interacting mature miRNAs:188
Transcripts:ENSRNOT00000003489
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 33 50 29
Low 3 10 53 37 10 37 8 11 24 6 34 9 8
Below cutoff 4 4 9 4 7 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001401443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_203336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB126962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB126963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY341057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000003489   ⟹   ENSRNOP00000003489
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1399,564,669 - 99,783,397 (+)Ensembl
Rnor_6.0 Ensembl13106,463,368 - 106,683,436 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095864   ⟹   ENSRNOP00000087260
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1399,566,225 - 99,783,397 (+)Ensembl
RefSeq Acc Id: NM_203336   ⟹   NP_976081
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21399,224,371 - 99,783,397 (+)NCBI
Rnor_6.013106,121,602 - 106,681,211 (+)NCBI
Rnor_5.013110,713,353 - 111,328,942 (+)NCBI
RGSC_v3.413103,794,661 - 104,405,301 (+)RGD
Celera1398,720,991 - 99,277,811 (+)RGD
Sequence:
RefSeq Acc Id: XM_006250443   ⟹   XP_006250505
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21399,562,470 - 99,788,016 (+)NCBI
Rnor_6.013106,458,985 - 106,683,353 (+)NCBI
Rnor_5.013110,713,353 - 111,328,942 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598866   ⟹   XP_017454355
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21399,167,656 - 99,788,016 (+)NCBI
Rnor_6.013106,063,799 - 106,683,353 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598867   ⟹   XP_017454356
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21399,212,734 - 99,788,016 (+)NCBI
Rnor_6.013106,109,770 - 106,683,353 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598868   ⟹   XP_017454357
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21399,213,554 - 99,788,016 (+)NCBI
Rnor_6.013106,110,781 - 106,683,353 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039090940   ⟹   XP_038946868
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21399,167,656 - 99,788,016 (+)NCBI
RefSeq Acc Id: XM_039090941   ⟹   XP_038946869
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21399,485,359 - 99,788,016 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_976081   ⟸   NM_203336
- UniProtKB: P62510 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006250505   ⟸   XM_006250443
- Peptide Label: isoform X1
- UniProtKB: P62510 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017454355   ⟸   XM_017598866
- Peptide Label: isoform X2
- UniProtKB: P62510 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017454356   ⟸   XM_017598867
- Peptide Label: isoform X2
- UniProtKB: P62510 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017454357   ⟸   XM_017598868
- Peptide Label: isoform X2
- UniProtKB: P62510 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000003489   ⟸   ENSRNOT00000003489
RefSeq Acc Id: XP_038946868   ⟸   XM_039090940
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038946869   ⟸   XM_039090941
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000087260   ⟸   ENSRNOT00000095864
Protein Domains
NR LBD

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699102
Promoter ID:EPDNEW_R9626
Type:single initiation site
Name:Esrrg_1
Description:estrogen-related receptor gamma
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.013106,463,422 - 106,463,482EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303236 AgrOrtholog
BioCyc Gene G2FUF-16932 BioCyc
Ensembl Genes ENSRNOG00000002593 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000003489 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000087260 ENTREZGENE
Ensembl Transcript ENSRNOT00000003489 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000095864 ENTREZGENE
Gene3D-CATH 1.10.565.10 UniProtKB/Swiss-Prot
  3.30.50.10 UniProtKB/Swiss-Prot
InterPro NHR-like_dom_sf UniProtKB/Swiss-Prot
  Nucl_hrmn_rcpt_lig-bd UniProtKB/Swiss-Prot
  Nuclear_hrmn_rcpt UniProtKB/Swiss-Prot
  Oest-rel_rcp UniProtKB/Swiss-Prot
  Oest_rcpt/oest-rel_rcp UniProtKB/Swiss-Prot
  Retinoic_acid_rcpt UniProtKB/Swiss-Prot
  Znf_hrmn_rcpt UniProtKB/Swiss-Prot
  Znf_NHR/GATA UniProtKB/Swiss-Prot
KEGG Report rno:360896 UniProtKB/Swiss-Prot
NCBI Gene 360896 ENTREZGENE
Pfam Hormone_recep UniProtKB/Swiss-Prot
  zf-C4 UniProtKB/Swiss-Prot
PhenoGen Esrrg PhenoGen
PIRSF ER-like_NR UniProtKB/Swiss-Prot
  ERR1-2-3 UniProtKB/Swiss-Prot
PRINTS RETNOICACIDR UniProtKB/Swiss-Prot
  STRDHORMONER UniProtKB/Swiss-Prot
  STROIDFINGER UniProtKB/Swiss-Prot
PROSITE NR_LBD UniProtKB/Swiss-Prot
  NUCLEAR_REC_DBD_1 UniProtKB/Swiss-Prot
  NUCLEAR_REC_DBD_2 UniProtKB/Swiss-Prot
SMART HOLI UniProtKB/Swiss-Prot
  ZnF_C4 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48508 UniProtKB/Swiss-Prot
UniProt ERR3_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q5QJE4 UniProtKB/Swiss-Prot
  Q75T51 UniProtKB/Swiss-Prot
  Q75T52 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-11-17 Esrrg  estrogen-related receptor gamma      Symbol updated 1299863 APPROVED
2005-07-14 errg  estrogen-related receptor gamma      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_physical_interaction recognizes inverted and direct DNA repeats with AGGTCA halfsites 1334481