Esrrg (estrogen-related receptor gamma) - Rat Genome Database

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Gene: Esrrg (estrogen-related receptor gamma) Rattus norvegicus
Analyze
Symbol: Esrrg
Name: estrogen-related receptor gamma
RGD ID: 1303236
Description: Predicted to enable several functions, including AF-2 domain binding activity; DNA-binding transcription factor activity, RNA polymerase II-specific; and estrogen response element binding activity. Predicted to be involved in intracellular steroid hormone receptor signaling pathway; positive regulation of cold-induced thermogenesis; and positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ESRRG (estrogen related receptor gamma); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: errg; estrogen receptor-related protein 3; nuclear receptor subfamily 3 group B member 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813101,699,043 - 102,316,877 (+)NCBIGRCr8
mRatBN7.21399,167,656 - 99,788,016 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1399,564,669 - 99,783,397 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13101,739,863 - 102,301,030 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013103,128,963 - 103,690,094 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013100,325,840 - 100,886,886 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013106,063,799 - 106,683,353 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13106,463,368 - 106,683,436 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013110,713,353 - 111,328,942 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413103,794,661 - 104,405,301 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113103,983,703 - 104,594,344 (+)NCBI
Celera1398,720,991 - 99,277,811 (+)NCBICelera
Cytogenetic Map13q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-di-tert-butylphenol  (ISO)
2-arachidonoylglycerol  (ISO)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-chloro-m-cresol  (ISO)
4-ethylphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-isopropylphenol  (ISO)
4-tert-butylphenol  (ISO)
4-tert-Octylphenol  (ISO)
5,6,7,8-tetrahydro-2-naphthol  (ISO)
8-Br-cAMP  (ISO)
afimoxifene  (EXP,ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
arachidonyl-2'-chloroethylamide  (EXP,ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
Benzo[ghi]perylene  (ISO)
Benzyl parahydroxybenzoate  (ISO)
biochanin A  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Butylparaben  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
daidzein  (ISO)
diarsenic trioxide  (ISO)
diethylstilbestrol  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
Ethyl salicylate  (ISO)
ethylparaben  (ISO)
fenthion  (ISO)
folic acid  (ISO)
furan  (EXP)
genistein  (ISO)
glyphosate  (EXP)
GSK 4716  (ISO)
inulin  (ISO)
lithium chloride  (ISO)
LY294002  (ISO)
methapyrilene  (ISO)
methoxychlor  (EXP)
methyl salicylate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
nickel atom  (ISO)
O-methyleugenol  (ISO)
ochratoxin A  (ISO)
p-tert-Amylphenol  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenol red  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
propylparaben  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
tauroursodeoxycholic acid  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zalcitabine  (EXP)
zoledronic acid  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Estrogen receptor-related receptor gamma has an exceptionally broad specificity of DNA sequence recognition. Razzaque MA, etal., Gene 2004 Oct 13;340(2):275-82.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Orphan nuclear receptor estrogen-related receptor alpha is essential for adaptive thermogenesis. Villena JA, etal., Proc Natl Acad Sci U S A. 2007 Jan 23;104(4):1418-23. doi: 10.1073/pnas.0607696104. Epub 2007 Jan 17.
Additional References at PubMed
PMID:10428842   PMID:12715898   PMID:15149736   PMID:17079227   PMID:21911493   PMID:23404793   PMID:23836911   PMID:26404484   PMID:36481985  


Genomics

Comparative Map Data
Esrrg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813101,699,043 - 102,316,877 (+)NCBIGRCr8
mRatBN7.21399,167,656 - 99,788,016 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1399,564,669 - 99,783,397 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13101,739,863 - 102,301,030 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013103,128,963 - 103,690,094 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013100,325,840 - 100,886,886 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013106,063,799 - 106,683,353 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13106,463,368 - 106,683,436 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013110,713,353 - 111,328,942 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413103,794,661 - 104,405,301 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113103,983,703 - 104,594,344 (+)NCBI
Celera1398,720,991 - 99,277,811 (+)NCBICelera
Cytogenetic Map13q26NCBI
ESRRG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381216,503,246 - 217,137,702 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1216,503,246 - 217,137,755 (-)EnsemblGRCh38hg38GRCh38
GRCh371216,676,588 - 217,311,044 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361214,743,211 - 215,329,599 (-)NCBINCBI36Build 36hg18NCBI36
Build 341213,064,982 - 213,651,371NCBI
Celera1189,900,435 - 190,535,016 (-)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1187,351,966 - 187,986,618 (-)NCBIHuRef
CHM1_11217,949,719 - 218,583,931 (-)NCBICHM1_1
T2T-CHM13v2.01215,743,580 - 216,378,774 (-)NCBIT2T-CHM13v2.0
Esrrg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391187,340,707 - 187,947,082 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1187,340,988 - 187,947,082 (+)EnsemblGRCm39 Ensembl
GRCm381187,608,510 - 188,214,885 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1187,608,791 - 188,214,885 (+)EnsemblGRCm38mm10GRCm38
MGSCv371189,821,738 - 190,038,763 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361189,698,647 - 189,915,672 (+)NCBIMGSCv36mm8
Celera1194,923,141 - 195,141,266 (+)NCBICelera
Cytogenetic Map1H5- H6NCBI
cM Map191.83NCBI
Esrrg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554061,560,485 - 1,788,250 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554061,260,240 - 1,784,652 (+)NCBIChiLan1.0ChiLan1.0
ESRRG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2132,304,329 - 32,901,855 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1132,266,717 - 32,859,746 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01192,074,260 - 192,667,610 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11196,929,197 - 197,508,064 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1196,929,197 - 197,153,195 (-)Ensemblpanpan1.1panPan2
ESRRG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13811,825,055 - 12,439,143 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3811,823,520 - 12,256,028 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3811,862,256 - 12,476,998 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03811,851,190 - 12,466,509 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3811,849,973 - 12,421,362 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13811,864,007 - 12,478,053 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03812,216,132 - 12,830,227 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03812,517,096 - 13,132,572 (-)NCBIUU_Cfam_GSD_1.0
Esrrg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934459,454,088 - 60,048,171 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366281,830,881 - 2,058,269 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366281,635,161 - 2,058,198 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ESRRG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl106,712,860 - 6,941,501 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1106,710,615 - 7,371,419 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2108,646,197 - 8,720,519 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ESRRG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12512,495,234 - 13,090,739 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2512,866,321 - 13,090,733 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605512,918,159 - 13,515,132 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Esrrg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624835812,742 - 1,015,767 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624835815,230 - 1,326,376 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Esrrg
3092 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:236
Count of miRNA genes:140
Interacting mature miRNAs:188
Transcripts:ENSRNOT00000003489
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat

Markers in Region
D13Rat47  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21399,258,249 - 99,258,417 (+)MAPPERmRatBN7.2
Rnor_6.013106,156,025 - 106,156,192NCBIRnor6.0
Rnor_5.013110,802,823 - 110,802,990UniSTSRnor5.0
RGSC_v3.413103,828,388 - 103,828,555UniSTSRGSC3.4
RGSC_v3.413103,828,387 - 103,828,555RGDRGSC3.4
RGSC_v3.113104,017,431 - 104,017,598RGD
Celera1398,754,181 - 98,754,348UniSTS
RH 3.4 Map13669.2RGD
RH 3.4 Map13669.2UniSTS
RH 2.0 Map13728.0RGD
FHH x ACI Map1357.9RGD
Cytogenetic Map13q26UniSTS
D13Rat49  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21399,778,880 - 99,779,019 (+)MAPPERmRatBN7.2
Rnor_6.013106,676,710 - 106,676,848NCBIRnor6.0
Rnor_5.013111,322,467 - 111,322,605UniSTSRnor5.0
RGSC_v3.413104,400,153 - 104,400,291UniSTSRGSC3.4
RGSC_v3.413104,400,047 - 104,400,321RGDRGSC3.4
RGSC_v3.113104,589,196 - 104,589,334RGD
Celera1399,273,152 - 99,273,290UniSTS
RH 3.4 Map13682.5RGD
RH 3.4 Map13682.5UniSTS
RH 2.0 Map13730.3RGD
FHH x ACI Map1358.79RGD
Cytogenetic Map13q26UniSTS
D13Got95  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21399,438,205 - 99,438,312 (+)MAPPERmRatBN7.2
Rnor_6.013106,338,935 - 106,339,041NCBIRnor6.0
Rnor_5.013110,985,046 - 110,985,152UniSTSRnor5.0
RGSC_v3.413104,009,971 - 104,010,078RGDRGSC3.4
RGSC_v3.413104,009,972 - 104,010,078UniSTSRGSC3.4
RGSC_v3.113104,199,015 - 104,199,121RGD
Celera1398,933,677 - 98,933,783UniSTS
RH 3.4 Map13682.6UniSTS
RH 3.4 Map13682.6RGD
RH 2.0 Map13728.8RGD
Cytogenetic Map13q26UniSTS
D13Got94  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21399,399,358 - 99,399,487 (+)MAPPERmRatBN7.2
Rnor_6.013106,300,059 - 106,300,187NCBIRnor6.0
Rnor_5.013110,946,170 - 110,946,298UniSTSRnor5.0
RGSC_v3.413103,970,590 - 103,970,719RGDRGSC3.4
RGSC_v3.413103,970,591 - 103,970,719UniSTSRGSC3.4
RGSC_v3.113104,159,634 - 104,159,762RGD
Celera1398,895,394 - 98,895,522UniSTS
RH 3.4 Map13683.9UniSTS
RH 3.4 Map13683.9RGD
RH 2.0 Map13747.5RGD
Cytogenetic Map13q26UniSTS
AU048237  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21399,248,165 - 99,248,325 (+)MAPPERmRatBN7.2
Rnor_6.013106,145,941 - 106,146,100NCBIRnor6.0
Rnor_5.013110,792,739 - 110,792,898UniSTSRnor5.0
RGSC_v3.413103,818,304 - 103,818,463UniSTSRGSC3.4
Celera1398,744,111 - 98,744,270UniSTS
Cytogenetic Map13q26UniSTS
BE108002  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21399,560,440 - 99,560,645 (+)MAPPERmRatBN7.2
Rnor_6.013106,459,171 - 106,459,375NCBIRnor6.0
Rnor_5.013111,105,529 - 111,105,733UniSTSRnor5.0
RGSC_v3.413104,133,489 - 104,133,693UniSTSRGSC3.4
Celera1399,055,270 - 99,055,474UniSTS
RH 3.4 Map13683.2UniSTS
Cytogenetic Map13q26UniSTS
UniSTS:495942  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21399,608,638 - 99,608,729 (+)MAPPERmRatBN7.2
Rnor_6.013106,507,415 - 106,507,505NCBIRnor6.0
Rnor_5.013111,153,773 - 111,153,863UniSTSRnor5.0
RGSC_v3.413104,182,190 - 104,182,280UniSTSRGSC3.4
Celera1399,103,440 - 99,103,530UniSTS
Cytogenetic Map13q26UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 33 50 29
Low 3 10 53 37 10 37 8 11 24 6 34 9 8
Below cutoff 4 4 9 4 7 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001401443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_203336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB126962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB126963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY341057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000003489   ⟹   ENSRNOP00000003489
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1399,564,669 - 99,783,397 (+)Ensembl
Rnor_6.0 Ensembl13106,463,368 - 106,683,436 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095864   ⟹   ENSRNOP00000087260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1399,566,225 - 99,783,397 (+)Ensembl
RefSeq Acc Id: NM_001401443   ⟹   NP_001388372
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813102,096,025 - 102,316,877 (+)NCBI
mRatBN7.21399,564,669 - 99,785,539 (+)NCBI
RefSeq Acc Id: NM_001415123   ⟹   NP_001402052
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813101,745,087 - 102,316,877 (+)NCBI
mRatBN7.21399,213,696 - 99,785,539 (+)NCBI
RefSeq Acc Id: NM_001415124   ⟹   NP_001402053
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813101,744,735 - 102,316,877 (+)NCBI
mRatBN7.21399,213,344 - 99,785,539 (+)NCBI
RefSeq Acc Id: NM_203336   ⟹   NP_976081
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813101,755,760 - 102,316,877 (+)NCBI
mRatBN7.21399,224,371 - 99,785,539 (+)NCBI
Rnor_6.013106,121,602 - 106,681,211 (+)NCBI
Rnor_5.013110,713,353 - 111,328,942 (+)NCBI
RGSC_v3.413103,794,661 - 104,405,301 (+)RGD
Celera1398,720,991 - 99,277,811 (+)RGD
Sequence:
RefSeq Acc Id: XM_017598866   ⟹   XP_017454355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813101,699,043 - 102,316,877 (+)NCBI
mRatBN7.21399,167,656 - 99,788,016 (+)NCBI
Rnor_6.013106,063,799 - 106,683,353 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039090940   ⟹   XP_038946868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813101,699,043 - 102,316,877 (+)NCBI
mRatBN7.21399,167,656 - 99,788,016 (+)NCBI
RefSeq Acc Id: XM_039090941   ⟹   XP_038946869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813102,012,809 - 102,316,877 (+)NCBI
mRatBN7.21399,485,359 - 99,788,016 (+)NCBI
RefSeq Acc Id: XM_063272508   ⟹   XP_063128578
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813101,745,272 - 102,316,877 (+)NCBI
RefSeq Acc Id: XM_063272509   ⟹   XP_063128579
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813101,744,949 - 102,316,877 (+)NCBI
RefSeq Acc Id: XM_063272510   ⟹   XP_063128580
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813101,699,043 - 102,316,877 (+)NCBI
RefSeq Acc Id: XM_063272511   ⟹   XP_063128581
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813101,744,168 - 102,316,877 (+)NCBI
RefSeq Acc Id: NP_976081   ⟸   NM_203336
- Peptide Label: isoform 2
- UniProtKB: A6JGU0 (UniProtKB/TrEMBL),   A0A8I6A6X6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454355   ⟸   XM_017598866
- Peptide Label: isoform X1
- UniProtKB: A6JGU0 (UniProtKB/TrEMBL),   A0A8I6A6X6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000003489   ⟸   ENSRNOT00000003489
RefSeq Acc Id: XP_038946868   ⟸   XM_039090940
- Peptide Label: isoform X1
- UniProtKB: A6JGU0 (UniProtKB/TrEMBL),   A0A8I6A6X6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946869   ⟸   XM_039090941
- Peptide Label: isoform X1
- UniProtKB: A6JGU0 (UniProtKB/TrEMBL),   A0A8I6A6X6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000087260   ⟸   ENSRNOT00000095864
RefSeq Acc Id: NP_001402053   ⟸   NM_001415124
- Peptide Label: isoform 2
- UniProtKB: A6JGU0 (UniProtKB/TrEMBL),   A0A8I6A6X6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001402052   ⟸   NM_001415123
- Peptide Label: isoform 2
- UniProtKB: A6JGU0 (UniProtKB/TrEMBL),   A0A8I6A6X6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388372   ⟸   NM_001401443
- Peptide Label: isoform 1
- UniProtKB: Q75T51 (UniProtKB/Swiss-Prot),   Q5QJE4 (UniProtKB/Swiss-Prot),   P62510 (UniProtKB/Swiss-Prot),   Q75T52 (UniProtKB/Swiss-Prot),   A6JGT8 (UniProtKB/TrEMBL),   A0A8I6A6X6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128580   ⟸   XM_063272510
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063128581   ⟸   XM_063272511
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063128579   ⟸   XM_063272509
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063128578   ⟸   XM_063272508
- Peptide Label: isoform X1
Protein Domains
NR LBD   Nuclear receptor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62510-F1-model_v2 AlphaFold P62510 1-458 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699102
Promoter ID:EPDNEW_R9626
Type:single initiation site
Name:Esrrg_1
Description:estrogen-related receptor gamma
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.013106,463,422 - 106,463,482EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303236 AgrOrtholog
BioCyc Gene G2FUF-16932 BioCyc
Ensembl Genes ENSRNOG00000002593 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055012043 UniProtKB/Swiss-Prot
  ENSRNOG00060006565 UniProtKB/Swiss-Prot
  ENSRNOG00065016782 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000003489 ENTREZGENE
  ENSRNOT00000003489.5 UniProtKB/Swiss-Prot
  ENSRNOT00000095864.1 UniProtKB/TrEMBL
  ENSRNOT00055020473 UniProtKB/Swiss-Prot
  ENSRNOT00060010762 UniProtKB/Swiss-Prot
  ENSRNOT00065028029 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.565.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Est_rcpt/est-rel_rcp UniProtKB/TrEMBL
  NHR-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Oest-rel_rcp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Oest_rcpt/oest-rel_rcp UniProtKB/Swiss-Prot
  Retinoic_acid_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:360896 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 360896 ENTREZGENE
PANTHER ESTROGEN-RELATED RECEPTOR GAMMA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KNIRPS-RELATED PROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Esrrg PhenoGen
PIRSF ER-like_NR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ERR1-2-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS RETNOICACIDR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002593 RatGTEx
  ENSRNOG00055012043 RatGTEx
  ENSRNOG00060006565 RatGTEx
  ENSRNOG00065016782 RatGTEx
SMART HOLI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48508 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A6X6 ENTREZGENE, UniProtKB/TrEMBL
  A6JGT8 ENTREZGENE, UniProtKB/TrEMBL
  A6JGU0 ENTREZGENE, UniProtKB/TrEMBL
  ERR3_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q5QJE4 ENTREZGENE
  Q75T51 ENTREZGENE
  Q75T52 ENTREZGENE
UniProt Secondary Q5QJE4 UniProtKB/Swiss-Prot
  Q75T51 UniProtKB/Swiss-Prot
  Q75T52 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-11-17 Esrrg  estrogen-related receptor gamma      Symbol updated 1299863 APPROVED
2005-07-14 errg  estrogen-related receptor gamma      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_physical_interaction recognizes inverted and direct DNA repeats with AGGTCA halfsites 1334481