Npdc1 (neural proliferation, differentiation and control, 1) - Rat Genome Database

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Gene: Npdc1 (neural proliferation, differentiation and control, 1) Rattus norvegicus
Analyze
Symbol: Npdc1
Name: neural proliferation, differentiation and control, 1
RGD ID: 1303156
Description: Predicted to be integral component of membrane. Orthologous to human NPDC1 (neural proliferation, differentiation and control 1); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC94179; neural proliferation differentiation and control protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.238,220,446 - 8,226,446 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl38,213,663 - 8,226,866 (+)Ensembl
Rnor_6.032,624,231 - 2,630,672 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,625,015 - 2,630,670 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,605,948 - 2,612,085 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,571,500 - 3,577,157 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.133,571,499 - 3,577,155 (+)NCBI
Celera33,045,895 - 3,051,550 (+)NCBICelera
Cytogenetic Map3p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Additional References at PubMed
PMID:15678517  


Genomics

Comparative Map Data
Npdc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.238,220,446 - 8,226,446 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl38,213,663 - 8,226,866 (+)Ensembl
Rnor_6.032,624,231 - 2,630,672 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,625,015 - 2,630,670 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,605,948 - 2,612,085 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,571,500 - 3,577,157 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.133,571,499 - 3,577,155 (+)NCBI
Celera33,045,895 - 3,051,550 (+)NCBICelera
Cytogenetic Map3p13NCBI
NPDC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,039,463 - 137,046,177 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl9137,039,463 - 137,046,179 (-)EnsemblGRCh38hg38GRCh38
GRCh379139,933,915 - 139,940,629 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,053,743 - 139,060,476 (-)NCBINCBI36hg18NCBI36
Build 349137,209,759 - 137,216,492NCBI
Celera9110,447,250 - 110,454,093 (-)NCBI
Cytogenetic Map9q34.3NCBI
HuRef9109,393,438 - 109,400,203 (-)NCBIHuRef
CHM1_19140,082,701 - 140,089,474 (-)NCBICHM1_1
Npdc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,293,062 - 25,299,506 (+)NCBIGRCm39mm39
GRCm39 Ensembl225,289,363 - 25,299,506 (+)Ensembl
GRCm38225,403,050 - 25,409,494 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,399,351 - 25,409,494 (+)EnsemblGRCm38mm10GRCm38
MGSCv37225,258,603 - 25,265,014 (+)NCBIGRCm37mm9NCBIm37
MGSCv36225,225,092 - 25,231,503 (+)NCBImm8
Celera225,130,546 - 25,136,992 (+)NCBICelera
Cytogenetic Map2A3NCBI
Npdc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,063,704 - 5,066,106 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,063,448 - 5,066,108 (-)NCBIChiLan1.0ChiLan1.0
NPDC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19137,068,533 - 137,070,669 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,068,846 - 137,072,257 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v09108,100,164 - 108,107,324 (-)NCBIMhudiblu_PPA_v0panPan3
NPDC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,596,398 - 48,601,327 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,596,398 - 48,611,437 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,810,024 - 47,816,162 (+)NCBI
ROS_Cfam_1.0949,474,444 - 49,480,565 (+)NCBI
ROS_Cfam_1.0 Ensembl949,474,458 - 49,480,138 (+)Ensembl
UMICH_Zoey_3.1948,250,679 - 48,256,800 (+)NCBI
UNSW_CanFamBas_1.0948,549,424 - 48,555,544 (+)NCBI
UU_Cfam_GSD_1.0948,596,734 - 48,602,866 (+)NCBI
Npdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,461,094 - 202,466,757 (-)NCBI
SpeTri2.0NW_004936669908,261 - 913,964 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NPDC1
(Sus scrofa - pig)
No map positions available.
NPDC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,144,810 - 1,151,593 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl121,144,752 - 1,151,619 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660584,151,221 - 4,158,089 (-)NCBIVero_WHO_p1.0
Npdc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624760866,358 - 871,572 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
AI314472  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.238,226,285 - 8,226,382 (+)MAPPERmRatBN7.2
Rnor_6.032,630,512 - 2,630,608NCBIRnor6.0
Rnor_5.032,611,925 - 2,612,021UniSTSRnor5.0
RGSC_v3.433,576,997 - 3,577,093UniSTSRGSC3.4
Celera33,051,390 - 3,051,486UniSTS
Cytogenetic Map3p13UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:35
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000018927
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 33 17 6 12 6 4 7 74 35 38 11 4
Low 10 40 35 7 35 4 4 3 4
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000017829   ⟹   ENSRNOP00000017829
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl38,213,663 - 8,220,040 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000018927   ⟹   ENSRNOP00000018927
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl38,220,678 - 8,226,866 (+)Ensembl
Rnor_6.0 Ensembl32,625,015 - 2,630,670 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094013   ⟹   ENSRNOP00000086303
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl38,213,663 - 8,226,862 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102806   ⟹   ENSRNOP00000091377
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl38,214,833 - 8,220,040 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112091   ⟹   ENSRNOP00000096205
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl38,220,678 - 8,226,866 (+)Ensembl
RefSeq Acc Id: NM_001004231   ⟹   NP_001004231
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.238,220,793 - 8,226,446 (+)NCBI
Rnor_6.032,625,015 - 2,630,672 (+)NCBI
Rnor_5.032,605,948 - 2,612,085 (+)NCBI
RGSC_v3.433,571,500 - 3,577,157 (+)RGD
Celera33,045,895 - 3,051,550 (+)RGD
Sequence:
RefSeq Acc Id: XM_006233584   ⟹   XP_006233646
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.238,220,495 - 8,226,446 (+)NCBI
Rnor_6.032,624,670 - 2,630,672 (+)NCBI
Rnor_5.032,605,948 - 2,612,085 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591629   ⟹   XP_017447118
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.238,220,473 - 8,226,446 (+)NCBI
Rnor_6.032,624,231 - 2,630,672 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104710   ⟹   XP_038960638
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.238,220,446 - 8,226,446 (+)NCBI
RefSeq Acc Id: XM_039104711   ⟹   XP_038960639
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.238,220,458 - 8,226,446 (+)NCBI
RefSeq Acc Id: XM_039104712   ⟹   XP_038960640
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.238,220,476 - 8,226,446 (+)NCBI
RefSeq Acc Id: XM_039104713   ⟹   XP_038960641
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.238,220,451 - 8,226,446 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001004231   ⟸   NM_001004231
- Peptide Label: precursor
- UniProtKB: Q6AY81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233646   ⟸   XM_006233584
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017447118   ⟸   XM_017591629
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000018927   ⟸   ENSRNOT00000018927
RefSeq Acc Id: XP_038960638   ⟸   XM_039104710
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038960641   ⟸   XM_039104713
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038960639   ⟸   XM_039104711
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038960640   ⟸   XM_039104712
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000096205   ⟸   ENSRNOT00000112091
RefSeq Acc Id: ENSRNOP00000091377   ⟸   ENSRNOT00000102806
RefSeq Acc Id: ENSRNOP00000017829   ⟸   ENSRNOT00000017829
RefSeq Acc Id: ENSRNOP00000086303   ⟸   ENSRNOT00000094013

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AY81-F1-model_v2 AlphaFold Q6AY81 1-331 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691877
Promoter ID:EPDNEW_R2401
Type:initiation region
Name:Npdc1_1
Description:neural proliferation, differentiation and control, 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.032,624,967 - 2,625,027EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303156 AgrOrtholog
BioCyc Gene G2FUF-50456 BioCyc
Ensembl Genes ENSRNOG00000013102 Ensembl, ENTREZGENE
  ENSRNOG00000013895 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000018927 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000096205 ENTREZGENE
Ensembl Transcript ENSRNOT00000018927 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000112091 ENTREZGENE
IMAGE_CLONE IMAGE:7128989 IMAGE-MGC_LOAD
InterPro NPDC1 UniProtKB/TrEMBL
KEGG Report rno:296562 UniProtKB/TrEMBL
MGC_CLONE MGC:94179 IMAGE-MGC_LOAD
NCBI Gene 296562 ENTREZGENE
PANTHER NPDC1 UniProtKB/TrEMBL
Pfam NPDC1 UniProtKB/TrEMBL
PhenoGen Npdc1 PhenoGen
UniProt Q6AY81 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Npdc1  neural proliferation, differentiation and control, 1      Symbol and Name status set to approved 1299863 APPROVED
2005-02-14 Npdc1  neural proliferation, differentiation and control, 1      Symbol and Name status set to provisional 70820 PROVISIONAL