Mtif2 (mitochondrial translational initiation factor 2) - Rat Genome Database

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Gene: Mtif2 (mitochondrial translational initiation factor 2) Rattus norvegicus
Analyze
Symbol: Mtif2
Name: mitochondrial translational initiation factor 2
RGD ID: 1303046
Description: Predicted to enable ribosomal small subunit binding activity and translation initiation factor activity. Predicted to be involved in mitochondrial translational initiation and ribosome disassembly. Predicted to be located in nucleoplasm. Predicted to be active in mitochondrion. Orthologous to human MTIF2 (mitochondrial translational initiation factor 2); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC94962; translation initiation factor IF-2, mitochondrial
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.214103,265,808 - 103,285,733 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14103,270,039 - 103,285,728 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14107,606,266 - 107,625,241 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.014108,839,576 - 108,858,733 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.014105,312,009 - 105,331,162 (+)NCBIRnor_WKY
Rnor_6.014113,946,084 - 113,965,574 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14113,945,843 - 113,965,745 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014113,612,463 - 113,631,953 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414110,538,911 - 110,559,208 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114110,565,257 - 110,585,554 (+)NCBI
Celera14102,143,108 - 102,162,277 (+)NCBICelera
Cytogenetic Map14q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
mitochondrion  (IBA,ISO,TAS)
nucleoplasm  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The human mitochondrial translation initiation factor 2 gene (MTIF2): transcriptional analysis and identification of a pseudogene. Overman RG Jr, etal., Biochim Biophys Acta 2003 Aug 25;1628(3):195-205.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:14651853   PMID:18614015   PMID:22658674  


Genomics

Comparative Map Data
Mtif2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.214103,265,808 - 103,285,733 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14103,270,039 - 103,285,728 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14107,606,266 - 107,625,241 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.014108,839,576 - 108,858,733 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.014105,312,009 - 105,331,162 (+)NCBIRnor_WKY
Rnor_6.014113,946,084 - 113,965,574 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14113,945,843 - 113,965,745 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014113,612,463 - 113,631,953 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414110,538,911 - 110,559,208 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114110,565,257 - 110,585,554 (+)NCBI
Celera14102,143,108 - 102,162,277 (+)NCBICelera
Cytogenetic Map14q22NCBI
MTIF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38255,236,595 - 55,269,248 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl255,236,595 - 55,269,347 (-)EnsemblGRCh38hg38GRCh38
GRCh37255,463,731 - 55,496,384 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36255,317,260 - 55,349,888 (-)NCBINCBI36Build 36hg18NCBI36
Build 34255,375,408 - 55,408,035NCBI
Celera255,304,281 - 55,336,881 (-)NCBICelera
Cytogenetic Map2p16.1NCBI
HuRef255,198,510 - 55,231,124 (-)NCBIHuRef
CHM1_1255,393,812 - 55,426,430 (-)NCBICHM1_1
T2T-CHM13v2.0255,233,823 - 55,266,465 (-)NCBIT2T-CHM13v2.0
Mtif2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391129,475,352 - 29,495,452 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1129,476,408 - 29,495,279 (+)EnsemblGRCm39 Ensembl
GRCm381129,525,352 - 29,545,452 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1129,526,408 - 29,545,279 (+)EnsemblGRCm38mm10GRCm38
MGSCv371129,426,457 - 29,445,255 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361129,426,465 - 29,445,279 (+)NCBIMGSCv36mm8
Celera1131,887,773 - 31,906,537 (+)NCBICelera
Cytogenetic Map11A3.3NCBI
Mtif2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542427,795,831 - 27,823,106 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542427,796,213 - 27,823,106 (+)NCBIChiLan1.0ChiLan1.0
MTIF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A56,533,501 - 56,566,725 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v02A55,393,726 - 55,427,469 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
MTIF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11056,136,231 - 56,157,940 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1056,136,229 - 56,155,118 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1056,092,957 - 56,114,566 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01057,140,282 - 57,161,892 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1057,140,315 - 57,161,836 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11056,841,449 - 56,863,061 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01057,120,686 - 57,142,296 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01057,411,167 - 57,432,794 (-)NCBIUU_Cfam_GSD_1.0
Mtif2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629226,912,737 - 26,937,695 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364911,632,996 - 1,658,529 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTIF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl385,947,635 - 85,989,111 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1385,947,617 - 85,989,455 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2390,731,516 - 90,773,925 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MTIF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11451,631,399 - 51,662,977 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1451,635,661 - 51,667,143 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604560,056,770 - 60,088,462 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtif2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248336,285,515 - 6,309,350 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH131424  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.014113,632,011 - 113,632,228NCBIRnor5.0
RGSC_v3.414110,559,267 - 110,559,483UniSTSRGSC3.4
Celera14102,162,336 - 102,162,552UniSTS
Cytogenetic Map14q22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:23
Count of miRNA genes:22
Interacting mature miRNAs:23
Transcripts:ENSRNOT00000005834
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 42 32 17 19 17 7 9 74 34 38 11 7
Low 1 25 24 24 1 2 1 3 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000005834   ⟹   ENSRNOP00000005834
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl14103,270,247 - 103,285,724 (+)Ensembl
Rnor_6.0 Ensembl14113,945,843 - 113,965,745 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094337   ⟹   ENSRNOP00000078141
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl14103,270,039 - 103,285,728 (+)Ensembl
RefSeq Acc Id: NM_001004254   ⟹   NP_001004254
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.214103,266,002 - 103,285,733 (+)NCBI
Rnor_6.014113,946,084 - 113,965,574 (+)NCBI
Rnor_5.014113,612,463 - 113,631,953 (+)NCBI
RGSC_v3.414110,538,911 - 110,559,208 (+)RGD
Celera14102,143,108 - 102,162,277 (+)RGD
Sequence:
RefSeq Acc Id: XM_039092118   ⟹   XP_038948046
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.214103,265,812 - 103,285,733 (+)NCBI
RefSeq Acc Id: XM_039092119   ⟹   XP_038948047
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.214103,265,812 - 103,285,733 (+)NCBI
RefSeq Acc Id: XM_039092120   ⟹   XP_038948048
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.214103,265,812 - 103,285,733 (+)NCBI
RefSeq Acc Id: XM_039092121   ⟹   XP_038948049
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.214103,265,812 - 103,285,733 (+)NCBI
RefSeq Acc Id: XM_039092122   ⟹   XP_038948050
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.214103,265,812 - 103,285,733 (+)NCBI
RefSeq Acc Id: XM_039092123   ⟹   XP_038948051
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.214103,265,812 - 103,285,733 (+)NCBI
RefSeq Acc Id: XM_039092124   ⟹   XP_038948052
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.214103,270,298 - 103,285,733 (+)NCBI
RefSeq Acc Id: XM_039092125   ⟹   XP_038948053
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.214103,265,813 - 103,285,733 (+)NCBI
RefSeq Acc Id: XM_039092126   ⟹   XP_038948054
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.214103,265,808 - 103,282,005 (+)NCBI
RefSeq Acc Id: XM_039092127   ⟹   XP_038948055
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.214103,278,292 - 103,285,733 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001004254   ⟸   NM_001004254
- UniProtKB: Q68FQ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000005834   ⟸   ENSRNOT00000005834
RefSeq Acc Id: XP_038948054   ⟸   XM_039092126
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038948046   ⟸   XM_039092118
- Peptide Label: isoform X1
- UniProtKB: Q68FQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948051   ⟸   XM_039092123
- Peptide Label: isoform X1
- UniProtKB: Q68FQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948049   ⟸   XM_039092121
- Peptide Label: isoform X1
- UniProtKB: Q68FQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948048   ⟸   XM_039092120
- Peptide Label: isoform X1
- UniProtKB: Q68FQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948047   ⟸   XM_039092119
- Peptide Label: isoform X1
- UniProtKB: Q68FQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948050   ⟸   XM_039092122
- Peptide Label: isoform X1
- UniProtKB: Q68FQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948053   ⟸   XM_039092125
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038948052   ⟸   XM_039092124
- Peptide Label: isoform X1
- UniProtKB: Q68FQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948055   ⟸   XM_039092127
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000078141   ⟸   ENSRNOT00000094337
Protein Domains
tr-type G

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699534
Promoter ID:EPDNEW_R10058
Type:multiple initiation site
Name:Mtif2_1
Description:mitochondrial translational initiation factor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.014113,946,055 - 113,946,115EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303046 AgrOrtholog
BioCyc Gene G2FUF-14650 BioCyc
Ensembl Genes ENSRNOG00000004161 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000005834 ENTREZGENE
  ENSRNOP00000005834.6 UniProtKB/TrEMBL
  ENSRNOP00000078141.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005834 ENTREZGENE
  ENSRNOT00000005834.7 UniProtKB/TrEMBL
  ENSRNOT00000094337.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.10050 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7113831 IMAGE-MGC_LOAD
InterPro IF2_II UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  ProtSyn_GTP_bd UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  TF_IF2_bacterial-like UniProtKB/TrEMBL
  TIF_IF2 UniProtKB/TrEMBL
  TIF_IF2_dom3 UniProtKB/TrEMBL
  TIF_IF2_dom3_sf UniProtKB/TrEMBL
  Transl_elong_init/rib_B-barrel UniProtKB/TrEMBL
KEGG Report rno:305606 UniProtKB/TrEMBL
MGC_CLONE MGC:94962 IMAGE-MGC_LOAD
NCBI Gene 305606 ENTREZGENE
PANTHER PTHR43381 UniProtKB/TrEMBL
Pfam GTP_EFTU UniProtKB/TrEMBL
  IF-2 UniProtKB/TrEMBL
PhenoGen Mtif2 PhenoGen
PROSITE G_TR_2 UniProtKB/TrEMBL
  IF2 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  TIF_IF2_dom3 UniProtKB/TrEMBL
  Translat_factor UniProtKB/TrEMBL
TIGRFAMs small_GTP UniProtKB/TrEMBL
UniProt A0A8I5Y2H0_RAT UniProtKB/TrEMBL
  Q68FQ5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F7FDM3 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Mtif2  mitochondrial translational initiation factor 2      Symbol and Name status set to approved 1299863 APPROVED
2005-02-14 Mtif2  mitochondrial translational initiation factor 2      Symbol and Name status set to provisional 70820 PROVISIONAL