Zcchc18 (zinc finger CCHC-type containing 18) - Rat Genome Database

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Gene: Zcchc18 (zinc finger CCHC-type containing 18) Ictidomys tridecemlineatus
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Symbol: Zcchc18
Name: zinc finger CCHC-type containing 18
RGD ID: 12988500
Description: ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC110597941; uncharacterized LOC110597941; zinc finger CCHC domain-containing protein 18
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X77,363,547 - 77,366,818 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493649910,293,483 - 10,294,414 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Zcchc18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X77,363,547 - 77,366,818 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493649910,293,483 - 10,294,414 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZCCHC18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X104,112,523 - 104,115,842 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX104,112,131 - 104,115,842 (+)EnsemblGRCh38hg38GRCh38
GRCh37X103,357,214 - 103,360,533 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X103,245,459 - 103,247,194 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX103,831,726 - 103,835,152 (+)NCBICelera
Cytogenetic MapXq22.2NCBI
HuRefX92,984,685 - 92,988,111 (+)NCBIHuRef
CHM1_1X103,267,996 - 103,271,422 (+)NCBICHM1_1
T2T-CHM13v2.0X102,543,724 - 102,547,043 (+)NCBIT2T-CHM13v2.0
Zcchc18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X135,893,128 - 135,899,221 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX135,893,904 - 135,899,221 (+)EnsemblGRCm39 Ensembl
GRCm38X136,992,379 - 136,998,472 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX136,993,155 - 136,998,472 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X133,527,694 - 133,531,462 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X132,339,519 - 132,343,287 (+)NCBIMGSCv36mm8
CeleraX120,277,630 - 120,281,400 (+)NCBICelera
Cytogenetic MapXF1NCBI
cM MapX59.1NCBI
Zcchc18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955548956,736 - 959,379 (+)NCBIChiLan1.0ChiLan1.0
ZCCHC18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X103,619,260 - 103,622,647 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X103,622,860 - 103,626,248 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X93,236,493 - 93,239,874 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X103,615,135 - 103,618,442 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX103,616,710 - 103,617,923 (+)Ensemblpanpan1.1panPan2
ZCCHC18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X77,456,000 - 77,457,859 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX63,651,997 - 63,653,550 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X79,074,557 - 79,076,110 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX79,073,063 - 79,076,113 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X76,558,710 - 76,560,264 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X78,261,597 - 78,263,149 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X77,994,188 - 77,995,741 (+)NCBIUU_Cfam_GSD_1.0
ZCCHC18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X84,870,668 - 84,875,040 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X98,830,960 - 98,834,099 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZCCHC18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X91,992,497 - 91,999,568 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606516,904,925 - 16,912,026 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zcchc18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480313,029,580 - 13,031,549 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_040283781   ⟹   XP_040139715
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X77,363,547 - 77,366,818 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040139715 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000025553.1
GenBank Protein KAG3272679 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040139715   ⟸   XM_040283781
- UniProtKB: A0A287CWA2 (UniProtKB/TrEMBL)
Protein Domains
Paraneoplastic antigen Ma-like C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000033563 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000040295.1 UniProtKB/TrEMBL
InterPro PNMA UniProtKB/TrEMBL
  PNMA_C UniProtKB/TrEMBL
NCBI Gene LOC110597941 ENTREZGENE
PANTHER PTHR23095 UniProtKB/TrEMBL
  ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 18 UniProtKB/TrEMBL
Pfam PNMA UniProtKB/TrEMBL
UniProt A0A287CWA2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 Zcchc18  zinc finger CCHC-type containing 18  LOC110597941  uncharacterized LOC110597941  Symbol and/or name change 5135510 APPROVED
2021-03-25 LOC110597941  uncharacterized LOC110597941  Zcchc18  zinc finger CCHC-type containing 18  Data merged from RGD:12449877 737654 PROVISIONAL