Nxnl2 (nucleoredoxin like 2) - Rat Genome Database

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Gene: Nxnl2 (nucleoredoxin like 2) Ictidomys tridecemlineatus
Analyze
Symbol: Nxnl2
Name: nucleoredoxin like 2
RGD ID: 12973410
Description: INVOLVED IN sensory perception of smell (ortholog); visual perception (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC110597122; nucleoredoxin-like protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494410,289,162 - 10,298,672 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936854404,695 - 414,172 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Nxnl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494410,289,162 - 10,298,672 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936854404,695 - 414,172 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NXNL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38988,535,178 - 88,584,510 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl988,534,033 - 88,584,274 (+)EnsemblGRCh38hg38GRCh38
GRCh37991,150,093 - 91,190,708 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36990,339,840 - 90,380,524 (+)NCBINCBI36Build 36hg18NCBI36
Build 34988,379,573 - 88,420,255NCBI
Celera961,726,247 - 61,766,931 (+)NCBICelera
Cytogenetic Map9q22.1NCBI
HuRef960,978,460 - 61,019,665 (+)NCBIHuRef
CHM1_1991,297,613 - 91,338,297 (+)NCBICHM1_1
T2T-CHM13v2.09100,689,280 - 100,738,616 (+)NCBIT2T-CHM13v2.0
Nxnl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391351,324,256 - 51,329,227 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1351,325,058 - 51,329,224 (+)EnsemblGRCm39 Ensembl
GRCm381351,168,706 - 51,175,191 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1351,171,022 - 51,175,188 (+)EnsemblGRCm38mm10GRCm38
MGSCv371351,266,394 - 51,270,556 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361351,183,522 - 51,187,684 (+)NCBIMGSCv36mm8
Celera1352,243,927 - 52,248,090 (+)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1326.08NCBI
Nxnl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81714,182,849 - 14,187,595 (-)NCBIGRCr8
mRatBN7.21714,031,151 - 14,035,897 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1714,031,153 - 14,036,189 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1713,956,511 - 13,961,257 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01715,561,715 - 15,566,466 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01713,883,331 - 13,888,079 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01714,053,896 - 14,058,642 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1714,053,896 - 14,058,642 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01716,120,216 - 16,124,962 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41719,922,403 - 19,927,149 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1713,770,283 - 13,775,029 (-)NCBICelera
Cytogenetic Map17p14NCBI
Nxnl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555153,413,256 - 3,424,212 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555153,413,398 - 3,424,205 (-)NCBIChiLan1.0ChiLan1.0
NXNL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21150,926,660 - 50,941,350 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1950,929,039 - 50,938,944 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0959,615,111 - 59,624,573 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1987,662,525 - 87,709,522 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl987,662,525 - 87,704,415 (+)Ensemblpanpan1.1panPan2
NXNL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha197,789,081 - 97,797,465 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0197,938,527 - 97,946,544 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl197,939,241 - 97,946,544 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1197,561,905 - 97,574,185 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0197,281,749 - 97,293,327 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0198,039,597 - 98,051,901 (-)NCBIUU_Cfam_GSD_1.0
NXNL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14348,345 - 357,227 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114348,225 - 357,227 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214503,259 - 504,542 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NXNL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11299,014,054 - 99,024,006 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1299,014,451 - 99,023,577 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603887,347,328 - 87,357,193 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nxnl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476524,105,042 - 24,115,748 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476524,104,325 - 24,115,965 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021720780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_021720780   ⟹   XP_021576455
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494410,289,162 - 10,298,672 (+)NCBI
SpeTri2.0NW_004936854404,695 - 414,172 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021576455 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3293624 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021576455   ⟸   XM_021720780
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC110597122 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 Nxnl2  nucleoredoxin like 2  LOC110597122  nucleoredoxin-like protein 2  Symbol and/or name change 5135510 APPROVED