Defb113 (defensin beta 113) - Rat Genome Database

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Gene: Defb113 (defensin beta 113) Ictidomys tridecemlineatus
Analyze
Symbol: Defb113
Name: defensin beta 113
RGD ID: 12971015
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta-defensin 113
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494653,330,360 - 53,331,437 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647610,628,765 - 10,629,842 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Defb113
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494653,330,360 - 53,331,437 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647610,628,765 - 10,629,842 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DEFB113
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38649,968,677 - 49,969,625 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl649,968,677 - 49,969,625 (-)EnsemblGRCh38hg38GRCh38
GRCh37649,936,390 - 49,937,338 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36650,044,349 - 50,045,297 (-)NCBINCBI36Build 36hg18NCBI36
Celera651,492,462 - 51,493,410 (-)NCBICelera
Cytogenetic Map6p12.3NCBI
HuRef649,667,884 - 49,668,832 (-)NCBIHuRef
CHM1_1649,939,142 - 49,940,090 (-)NCBICHM1_1
T2T-CHM13v2.0649,811,571 - 49,812,519 (-)NCBIT2T-CHM13v2.0
Defb18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39118,306,626 - 18,307,700 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl118,306,697 - 18,307,667 (-)EnsemblGRCm39 Ensembl
GRCm38118,236,402 - 18,237,476 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl118,236,473 - 18,237,443 (-)EnsemblGRCm38mm10GRCm38
MGSCv37118,226,554 - 18,227,524 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36118,221,687 - 18,222,657 (-)NCBIMGSCv36mm8
Celera118,139,540 - 18,140,510 (-)NCBICelera
Cytogenetic Map1A3NCBI
cM Map15.7NCBI
Defb18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8928,348,776 - 28,349,793 (-)NCBIGRCr8
mRatBN7.2920,852,230 - 20,853,247 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl920,852,300 - 20,853,211 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx929,382,664 - 29,383,575 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0934,499,190 - 34,500,101 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0932,809,999 - 32,810,910 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0924,466,981 - 24,467,892 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl924,466,981 - 24,467,892 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0923,329,459 - 23,330,370 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4917,086,127 - 17,087,038 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera918,489,409 - 18,490,320 (-)NCBICelera
Cytogenetic Map9q13NCBI
DEFB113
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2564,449,834 - 64,450,782 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1660,315,637 - 60,316,585 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0649,535,970 - 49,536,918 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1650,795,583 - 50,796,531 (-)NCBIpanpan1.1PanPan1.1panPan2
DEFB113
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11217,791,239 - 17,792,527 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1217,791,239 - 17,792,185 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1217,687,159 - 17,688,447 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01218,285,606 - 18,286,894 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1218,285,606 - 18,286,551 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11217,797,457 - 17,798,745 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01217,903,362 - 17,904,643 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01218,033,720 - 18,035,008 (-)NCBIUU_Cfam_GSD_1.0
DEFB113
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl743,999,267 - 44,000,238 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1743,999,119 - 44,000,402 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DEFB113
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1722,443,252 - 22,444,198 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604449,936,406 - 49,937,355 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021721761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021721761   ⟹   XP_021577436
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494653,330,360 - 53,331,437 (-)NCBI
SpeTri2.0NW_00493647610,628,765 - 10,629,842 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021577436 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3289613 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021577436   ⟸   XM_021721761
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Defb113 ENTREZGENE