Mmp12<sup>em1Soar</sup> (matrix metallopeptidase 12; TALEN induced mutant 1,Soar) - Rat Genome Database

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Gene: Mmp12em1Soar (matrix metallopeptidase 12; TALEN induced mutant 1,Soar) Rattus norvegicus
Analyze
Symbol: Mmp12em1Soar
Name: matrix metallopeptidase 12; TALEN induced mutant 1,Soar
RGD ID: 12910500
Description: The TALEN genome editing system caused a 664-bp deletion in the exon 2 of rat Mmp12
ASSOCIATED WITH decreased fetal weight
Type: allele  of Mmp12  
Previously known as: Mmp12^[em1Soar]; Mmp12em1Soar
Is Marker For: Strains:   SD-Mmp12em1Soar  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position: No map positions available.


Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. HIF-KDM3A-MMP12 regulatory circuit ensures trophoblast plasticity and placental adaptations to hypoxia. Chakraborty D, etal., Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):E7212-E7221. Epub 2016 Nov 2.

Genomics

Allelic Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Assembly
Mmp12em1Soar-var1 chr8 4582695 4583358 TTCCTCTGGAATTTTGGTAATCTGACTAATAATTTATAATGTTTTAAATAACATAGGAAGTTATTTTCTCCTCCTTGTAATAGACTCTCTAGGTAATAATAATAATGCAGCCTGTGATTAAAATACCTGGCTCAGGAACATCAGTATGCTACTGACCATGTTTGCAGGATTCCCAGCAGAAACCTGGCCGCATACAACTGTGTGCAATGCTTGTGTTTTGTCTAGTGGTACTTGTCAAGATTTTTTGACTATCAAGGGGACAGAATTCCAATGACAAAAACAAAAACCAATAGAAACCTCCTAGAAGAAAAACTCCAGGAAATGCAGCAGTTCTTTGGGCTAGAAGTAACTGGGCAACTGGACACCTCAACTCTGAAAATAATGCACACGTCTCGATGTGGAGTGCCTGATGTACAGCATCTTAGAGCAGTGCCCCAGAGGTCAAGATGGATGAAGCGGTATCTCACTTACAGGTAATGTCATTGGAGAACTCTTCTACTTGCCTATGAGTGTAGCCTCTAGAACCCTAGAACATTTAGCTACAACGAAATTCTAAATCCAAGAGTAGCCTCTGCAAATTGTTAATACAAATGTGTTCATTTTCTCCAGACTGGGTTGATGGCTCAGTGGAAAAAGCACTTGTCATACACTATAAGGGCCAGAG - deletion mRatBN7.2
Mmp12em1Soar-var1 chr8 5607502 5608165 TTCCTCTGGAATTTTGGTAATCTGACTAATAATTTATAATGTTTTAAATAACATAGGAAGTTATTTTCTCCTCCTTGTAATAGACTCTCTAGGTAATAATAATAATGCAGCCTGTGATTAAAATACCTGGCTCAGGAACATCAGTATGCTACTGACCATGTTTGCAGGATTCCCAGCAGAAACCTGGCCGCATACAACTGTGTGCAATGCTTGTGTTTTGTCTAGTGGTACTTGTCAAGATTTTTTGACTATCAAGGGGACAGAATTCCAATGACAAAAACAAAAACCAATAGAAACCTCCTAGAAGAAAAACTCCAGGAAATGCAGCAGTTCTTTGGGCTAGAAGTAACTGGGCAACTGGACACCTCAACTCTGAAAATAATGCACACGTCTCGATGTGGAGTGCCTGATGTACAGCATCTTAGAGCAGTGCCCCAGAGGTCAAGATGGATGAAGCGGTATCTCACTTACAGGTAATGTCATTGGAGAACTCTTCTACTTGCCTATGAGTGTAGCCTCTAGAACCCTAGAACATTTAGCTACAACGAAATTCTAAATCCAAGAGTAGCCTCTGCAAATTGTTAATACAAATGTGTTCATTTTCTCCAGACTGGGTTGATGGCTCAGTGGAAAAAGCACTTGTCATACACTATAAGGGCCAGAG - deletion Rnor_6.0

Related Rat Strains
The following Strains have been annotated to Mmp12em1Soar


Expression


Sequence

Nucleotide Sequences


Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-16 Mmp12em1Soar  matrix metallopeptidase 12; TALEN induced mutant 1,Soar  Mmp12em1Soar    changed 629549 APPROVED