STK32A-AS1 (STK32A antisense RNA 1)

Gene: STK32A-AS1 (STK32A antisense RNA 1) Homo sapiens

Analyze

Symbol:

STK32A-AS1

Name:

STK32A antisense RNA 1

RGD ID:

12902801

HGNC Page

HGNC:53468

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

CTC-255N20

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	147,177,035 - 147,234,931 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	147,180,204 - 147,234,859 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	146,556,598 - 146,614,494 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	5	q32	NCBI
CHM1_1	5	145,996,370 - 146,046,940 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	147,713,011 - 147,770,900 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:28415557

Genomics

Variants

Variants in STK32A-AS1
1 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 5q23.3-33.2(chr5:130860928-155321811)x3	copy number gain	See cases [RCV000051193]	Chr5:130860928..155321811 [GRCh38] Chr5:130196621..154701371 [GRCh37] Chr5:130224520..154681564 [NCBI36] Chr5:5q23.3-33.2	pathogenic
GRCh38/hg38 5q32(chr5:145197355-148541511)x1	copy number loss	See cases [RCV000136679]	Chr5:145197355..148541511 [GRCh38] Chr5:144576918..147921074 [GRCh37] Chr5:144557111..147901267 [NCBI36] Chr5:5q32	pathogenic
GRCh38/hg38 5q32(chr5:146799840-147408423)x3	copy number gain	See cases [RCV000138048]	Chr5:146799840..147408423 [GRCh38] Chr5:146179403..146787986 [GRCh37] Chr5:146159596..146768179 [NCBI36] Chr5:5q32	likely benign
GRCh38/hg38 5q23.3-33.2(chr5:129847794-153353546)x3	copy number gain	See cases [RCV000138808]	Chr5:129847794..153353546 [GRCh38] Chr5:129183487..152733106 [GRCh37] Chr5:129211386..152713299 [NCBI36] Chr5:5q23.3-33.2	pathogenic
GRCh38/hg38 5q31.3-32(chr5:141089988-149530678)x3	copy number gain	See cases [RCV000139504]	Chr5:141089988..149530678 [GRCh38] Chr5:140469572..148910241 [GRCh37] Chr5:140449756..148890434 [NCBI36] Chr5:5q31.3-32	pathogenic
GRCh38/hg38 5q21.3-33.2(chr5:106619588-156124387)x1	copy number loss	See cases [RCV000053524]	Chr5:106619588..156124387 [GRCh38] Chr5:105955289..155551397 [GRCh37] Chr5:105983188..155483975 [NCBI36] Chr5:5q21.3-33.2	pathogenic

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	118
Count of miRNA genes:	115
Interacting mature miRNAs:	118
Transcripts:	ENST00000504297
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

visual system

adipose tissue

appendage

pharyngeal arch

High

Medium

405

395

386

Low

1529

1256

1069

2135

770

1005

147

530

810

776

1233

Below cutoff

693

788

407

302

240

184

1370

865

2100

191

667

560

123

397

807

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_147190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_147191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA602845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC011338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BI767177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KF458026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000504297

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	147,180,204 - 147,234,859 (-)	Ensembl

RefSeq Acc Id:

NR_147190

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	147,177,035 - 147,234,859 (-)	NCBI
T2T-CHM13v2.0	5	147,713,011 - 147,770,828 (-)	NCBI

Sequence:

show sequence

CCTGGGTGAGCGCCAGACGCCTGGGGTCCGTTTGCCGCCTGCTGAGACTAGACAAGGACCCCGG
GAGGGCGACGTTGGGGGAGAGGGCTACGGATGGAGGTCCCGCCGCGCTTGGGCCGGGTCCGGAG
CCACCAGGACGCACAGCGGGTTTCCCTCATTCTCAGTCAGGTGGTTGAGTTATCCAAGCCTTCA
TAACCAGAGGGTCTGAGCACTTGTTGGACTGTGCTTACTGCAGCTTCTCATTTACAATTACCAC
TGCACCTGAGAGTACCAAGAGATTCCTGAGCCAGAGATTACGATTTCCAACTTCCAGCTCCTCA
AGATGGAGAAACAGAGGGAAGAAGAGACTTGGAATCACTCTGTCCTGGCTGTGGGTCTATGAAA
AAGAATGTGGCCTACTGCTAAATACATTGATTTTGAAGCTAGATAGCTCTGGTTTTGGGGAGCA
AGTGATTTGATCTCTCAGAGACTCAGCTACTTCATCAGTAAACAGAGATTACCATATCCACCAG
TAATGGCTATAGGAGCAGTAATAGGGATGATATAGGTGAAAGCACTGATCACTGAATGATTCCA
AAGACAGGTGCAGAGAGGTTCAGGCATCAGACAGGCTACCTGGATCCAAATCCCAGCTCCATCA
TTTACTACTTTCATGGCCTTTACAAACCACTAAACTTCTCTCTGAGCTTCAATTTTCCCATCTG
TAACATGGGAACTAATAAAATGAAACCTTCCTAATAAAGTTGCCAGGAAGATTCATTGAGACAT
TGAATGTAAAGTATTTAACTCAATATAGAGCACAGGGGAGCACCAAATAAAATTCAGGTGTTAC
ATTTTTAAGCACGTGTTCACCAAGGCTCCCAATTCAGGTGGTGAGGATTCTATGATGATCAATT
CCTCCTAAGGTATTTGTAAAATGACCCACCAGATTACCAACCATTCCTGTATTTCCAGAACCCT
TTGGAGTCCTTTATGTAACCTGGGAGAGCTGTTATTCTTTTTTCTTTTTGGTAGAAGTGAAATC
CTGCAGGAAAACTTGCTCCATTTTGGTTATTTCTGTTATATCACAAGGTGGGCTGGATAGCAAG
TTTTGGAAGCACTGAACACCCACACGGAGCTGGCTCCTCTCAGGCGGGGAGGCATCTTCACTAA
GGAGAGGTGCAGTCTGTGTCCCCGTCCTTGACTCTGAGAATCCCTGTGATCAACAGAATGCAGA
AAAGTGACACTGCATGGCTTCTGAGGCTAGGTCCAGAAAAGGTGATGCAGCTTCCCCCTTTGCG
CTGAAATGCAGTGCTTGGACCTCAGAGCTATTGACTAAGAAGTCCATGCACCCTGAGCTTCTCA
TGCTGGGGAAGCCACGTGTAGGCATTCAGTTCCCAGCCCAGCTGAGCTCCATCCTGGCTGCAAC
AATTGTTCTCATGAGGAAGCCATCTTGGACACTCAGCTCCATGGAGCCTCCACGAGTCGCCAGC
CCCAACTGACATCTGTCTCACTGCAACCACAGAAGAGCCTCCAACCAAGAACTGCACAGCTGAA
CCCTTTCTAAATTCTTGATCTCCAAAAAGCCATGCACAAAATAAAATGGTTGTTTTGAGCCACT
AAACTCTGGAA

hide sequence

RefSeq Acc Id:

NR_147191

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	147,208,670 - 147,234,931 (-)	NCBI
T2T-CHM13v2.0	5	147,744,649 - 147,770,900 (-)	NCBI

Sequence:

show sequence

GGAAGGAGGCGGGATCTGCTTGCCAGCGGGCGTCTCCGCTTAGCGCTCTCTCCAGAAACCGCTG
GGCAGTCTCCTGGGTGAGCGCCAGACGCCTGGGGTCCGTTTGCCGCCTGCTGAGACTAGACAAG
GACCCCGGGAGGGCGACGTTGGGGGAGAGGGCTACGGATGGAGGTCCCGCCGCGCTTGGGCCGG
GTCCGGAGCCACCAGGACGCACAGCGGGCACAGAGCTCAACACTTTATTTGCTCCCTGTCATTC
AATGCTAATAATACCAATATTCAGTGAAAAATACTGGAGCTTAAAGGTCAGATCACTTGTCCAG
AGTCACAGAACAGAAGCCCAAGTAATCTGGTATAACAGCCAGGCTTTTTTTCTACTACAACATT
CTTCATCCTGTATGACATTTTGAAATCTGGAATTAGAAGAGTGGAGTTCATGTGTCGCCTGAAA
TGATCCTCATGCCATAAAGGTGACTGAAGCTCAAAAATAAAGGACCTAAGTGGTTTAAAAAATG
TCATATGGCATGTCAGAGCATCTGTCCTGGTCAGCTGGTAGTGGTTGCCTGGAGGATTGTGTTG
GGATAGGACTATGAAGTCCAATCTGAGTCTCATGGGATGAAAGTCATGTTGTGATTGATTGAAG
ATGTCTGCTTAGTATGCTACAATGGAACCATACCAAGGGAGTATTTAATGTTTGCAAATTCACA
TTTTTGTGCTCTGCTAAGGAACAGATTGGTGGATAGGAAGGATCTGAGAAACAGAAATCAAGAT
TGTGTGAATGGCAGCTTGGAAATGAAAAAGAGAACAAATGAATGAGCAATTAAAATATTGCAGA
CTCTTCCGATTGCCATTTCATGCAATGAATACATGCCTCTAAGTGAGTGTGAGAACCTTGATAG
AATTTCCTGTTCTCTCAGTCAGGAGCATATCTCCATACAGAGTATGATTCTAGGCTTTAAAGCT
ACTTTTCTTTTCTTTCTTTCTTTCTTTTTTTCCAATGCAACATGTCCCAGAAGCAAGCTACCTA
CATTAGTTTGCAGTGTTCAATTAGGGTGGGGGAAACACAGTATGTTTCAATAGGGGAGGCAAAT
TTGGCAATATTGAATGTTTTAAAACATGTTTATTAGGTTTTCATATGCAGTTTTCCTCAAGGCA
ATTTTGACTTGATGCACTTTCATCTATATTATGTACTTACAAACCACCCCCTTGAAAGGTGTAT
CTCTACGGTACATCATAAATGTGATATCCTCTAACAAGCCCAAGGTAACATCAGGCATTAAATA
CTCAACGTTAACTTTAATTAGTACCCTCACCTGCAAGAGTGCAAGTGATTGAAGATTGCAGCAA
ATGCTTATCCCATTCCTTTAAGTCCCCAGAATGACTGTCTAGACCAATGTCCTTACTCATTCCT
TATTCTTCTGAGGCTTTGCTAACTGGAGTACAGGAGCAGTCAGCAGGCCCAGAGGTATGTTTTA
CCTTTCTGATAACTTTATTGGATGATCAAACCACTGGTTTACCTTGGCCATTTGAATGTCTGTA
CTAAGTGCTCACTCTGCTAGCCACCCTACAGAAAGAAAGGGATCAGGCCAATAGGAGTTCAAAC
AATGACCCATAACTCTAGCATTATAAGCTCAGGCCCTAAACTAGGGTCATTCTCAGTCTAGGTC
TAGTTGTCAGCTCATAACTATACTAGTCACAACTTATGCGTTCATGTGTTATACCTGCCTGTTT
TTGCTTCTAAGGGGATTTTGTTATCAAACAAAGATGGAACATGGACACAGGCAGATAAGAATTC
TAAATATAATCCCTTTCTTGCCTTCAGAAATTTCTGTAAAGCCTTTGAAGAATGCAAAAGTGGC
TTATTTTGAGTAAAAACTGGAATATTAATCAGGAATTAGATACCTGGCTTGTATTTCAGATTCT
GCCTTGGATTGCTGGTCATATTCAACACCTTCTTTATCTGCGGCATAAAGAGACTACTGTGTCT
GTCTTTTTTGGCACAAAAGTGATGAAGATAAATGATATATTGTGCTTCAGTATAATTCCTTTGT
TAATTATAATATTATATAA

hide sequence

Promoters

RGD ID:

15095954

Promoter ID:

EPDNEWNC_H791

Type:

initiation region

Name:

STK32A-AS1_1

Description:

STK32A antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:53468]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	147,234,878 - 147,234,938	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
COSMIC	STK32A-AS1	COSMIC
Ensembl Genes	ENSG00000250343	Ensembl
GTEx	ENSG00000250343	GTEx
HGNC ID	HGNC:53468	ENTREZGENE
Human Proteome Map	STK32A-AS1	Human Proteome Map
NCBI Gene	STK32A-AS1	ENTREZGENE
RNAcentral	URS0000BC4541	RNACentral
	URS0000BC463F	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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