LINC02427 (long intergenic non-protein coding RNA 2427)

Gene: LINC02427 (long intergenic non-protein coding RNA 2427) Homo sapiens

Analyze

Symbol:

LINC02427

Name:

long intergenic non-protein coding RNA 2427

RGD ID:

12801349

HGNC Page

HGNC:53358

Description:

INTERACTS WITH lipopolysaccharide; S-(1,2-dichlorovinyl)-L-cysteine

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	184,506,460 - 184,537,583 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	184,503,271 - 184,537,626 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	185,427,614 - 185,458,737 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	4	q35.1	NCBI
CHM1_1	4	185,401,279 - 185,436,345 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	187,850,295 - 187,881,416 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

lipopolysaccharide (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (EXP)

References

Additional References at PubMed

PMID:16344560

Genomics

Variants

Variants in LINC02427
2 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 4q34.3-35.1(chr4:181579626-186100199)x1	copy number loss	See cases [RCV000050324]	Chr4:181579626..186100199 [GRCh38] Chr4:182500779..187021353 [GRCh37] Chr4:182737773..187258347 [NCBI36] Chr4:4q34.3-35.1	pathogenic
GRCh38/hg38 4q32.2-35.2(chr4:162013220-189975519)x3	copy number gain	See cases [RCV000050649]	Chr4:162013220..189975519 [GRCh38] Chr4:162934372..190828225 [GRCh37] Chr4:163153822..191133668 [NCBI36] Chr4:4q32.2-35.2	pathogenic
GRCh38/hg38 4q35.1-35.2(chr4:183528264-188624331)x1	copy number loss	See cases [RCV000050665]	Chr4:183528264..188624331 [GRCh38] Chr4:184449417..189545485 [GRCh37] Chr4:184686411..189782479 [NCBI36] Chr4:4q35.1-35.2	pathogenic
GRCh38/hg38 4q34.1-35.2(chr4:173599911-188624331)x1	copy number loss	See cases [RCV000050771]	Chr4:173599911..188624331 [GRCh38] Chr4:174521062..189545485 [GRCh37] Chr4:174757637..189782479 [NCBI36] Chr4:4q34.1-35.2	pathogenic
GRCh38/hg38 4q34.2-35.2(chr4:175483683-189975519)x1	copy number loss	See cases [RCV000051215]	Chr4:175483683..189975519 [GRCh38] Chr4:176404834..190828225 [GRCh37] Chr4:176641828..191133668 [NCBI36] Chr4:4q34.2-35.2	pathogenic
GRCh38/hg38 4q26-35.2(chr4:118065569-190042639)x3	copy number gain	See cases [RCV000051785]	Chr4:118065569..190042639 [GRCh38] Chr4:118986724..190828225 [GRCh37] Chr4:119206172..191200788 [NCBI36] Chr4:4q26-35.2	pathogenic
GRCh38/hg38 4q34.1-35.2(chr4:172200228-189975519)x3	copy number gain	See cases [RCV000051804]	Chr4:172200228..189975519 [GRCh38] Chr4:173121379..190828225 [GRCh37] Chr4:173357954..191133668 [NCBI36] Chr4:4q34.1-35.2	pathogenic
GRCh38/hg38 4q27-35.2(chr4:121518223-190062270)x3	copy number gain	See cases [RCV000051786]	Chr4:121518223..190062270 [GRCh38] Chr4:122439378..190828225 [GRCh37] Chr4:122658828..191220419 [NCBI36] Chr4:4q27-35.2	pathogenic
GRCh38/hg38 4q31.23-35.2(chr4:148356485-189548183)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051789]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051789]\|See cases [RCV000051789]	Chr4:148356485..189548183 [GRCh38] Chr4:149277637..190469337 [GRCh37] Chr4:149497087..190706331 [NCBI36] Chr4:4q31.23-35.2	pathogenic
GRCh38/hg38 4q32.3-35.2(chr4:167218288-189975519)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051792]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051792]\|See cases [RCV000051792]	Chr4:167218288..189975519 [GRCh38] Chr4:168139439..190828225 [GRCh37] Chr4:168376014..191133668 [NCBI36] Chr4:4q32.3-35.2	pathogenic
GRCh38/hg38 4q34.3-35.2(chr4:179946068-189548183)x3	copy number gain	See cases [RCV000051805]	Chr4:179946068..189548183 [GRCh38] Chr4:180867221..190469337 [GRCh37] Chr4:181104215..190706331 [NCBI36] Chr4:4q34.3-35.2	pathogenic
GRCh38/hg38 4q35.1(chr4:182990639-186013514)x3	copy number gain	See cases [RCV000051806]	Chr4:182990639..186013514 [GRCh38] Chr4:183911792..186934668 [GRCh37] Chr4:184148786..187171662 [NCBI36] Chr4:4q35.1	pathogenic
GRCh38/hg38 4q32.1-35.2(chr4:158568335-189975660)x1	copy number loss	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053325]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053325]\|See cases [RCV000053325]	Chr4:158568335..189975660 [GRCh38] Chr4:159489487..190828225 [GRCh37] Chr4:159708937..191133809 [NCBI36] Chr4:4q32.1-35.2	pathogenic
GRCh38/hg38 4q32.3-35.2(chr4:163651681-189975519)x1	copy number loss	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053327]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053327]\|See cases [RCV000053327]	Chr4:163651681..189975519 [GRCh38] Chr4:164572833..190828225 [GRCh37] Chr4:164792283..191133668 [NCBI36] Chr4:4q32.3-35.2	pathogenic
GRCh38/hg38 4q32.3-35.2(chr4:164039530-189982708)x1	copy number loss	See cases [RCV000053347]	Chr4:164039530..189982708 [GRCh38] Chr4:164960682..190828225 [GRCh37] Chr4:165180132..191140857 [NCBI36] Chr4:4q32.3-35.2	pathogenic
GRCh38/hg38 4q34.1-35.2(chr4:171507704-189869726)x1	copy number loss	See cases [RCV000053349]	Chr4:171507704..189869726 [GRCh38] Chr4:172428855..190790881 [GRCh37] Chr4:172665430..191027875 [NCBI36] Chr4:4q34.1-35.2	pathogenic
GRCh38/hg38 4q34.1-35.2(chr4:172356988-189975519)x1	copy number loss	See cases [RCV000053352]	Chr4:172356988..189975519 [GRCh38] Chr4:173278139..190828225 [GRCh37] Chr4:173514714..191133668 [NCBI36] Chr4:4q34.1-35.2	pathogenic
GRCh38/hg38 4q34.1-35.2(chr4:173754675-189343295)x1	copy number loss	See cases [RCV000053353]	Chr4:173754675..189343295 [GRCh38] Chr4:174675826..190264449 [GRCh37] Chr4:174912401..190501443 [NCBI36] Chr4:4q34.1-35.2	pathogenic
GRCh38/hg38 4q34.2-35.2(chr4:176263514-189975519)x1	copy number loss	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053373]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053373]\|See cases [RCV000053373]	Chr4:176263514..189975519 [GRCh38] Chr4:177184665..190828225 [GRCh37] Chr4:177421659..191133668 [NCBI36] Chr4:4q34.2-35.2	pathogenic
GRCh38/hg38 4q34.3-35.2(chr4:177442769-190042639)x1	copy number loss	See cases [RCV000053374]	Chr4:177442769..190042639 [GRCh38] Chr4:178363923..190828225 [GRCh37] Chr4:178600917..191200788 [NCBI36] Chr4:4q34.3-35.2	pathogenic
GRCh38/hg38 4q34.3-35.2(chr4:179669472-189975660)x1	copy number loss	See cases [RCV000053375]	Chr4:179669472..189975660 [GRCh38] Chr4:180590625..190828225 [GRCh37] Chr4:180827619..191133809 [NCBI36] Chr4:4q34.3-35.2	pathogenic
GRCh38/hg38 4q34.3-35.2(chr4:179945868-189975660)x1	copy number loss	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053376]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053376]\|See cases [RCV000053376]	Chr4:179945868..189975660 [GRCh38] Chr4:180867021..190828225 [GRCh37] Chr4:181104015..191133809 [NCBI36] Chr4:4q34.3-35.2	pathogenic
GRCh38/hg38 4q34.3-35.2(chr4:181455566-189975660)x1	copy number loss	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053377]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053377]\|See cases [RCV000053377]	Chr4:181455566..189975660 [GRCh38] Chr4:182376719..190828225 [GRCh37] Chr4:182613713..191133809 [NCBI36] Chr4:4q34.3-35.2	pathogenic
GRCh38/hg38 4q35.1-35.2(chr4:183354112-190042639)x1	copy number loss	See cases [RCV000053378]	Chr4:183354112..190042639 [GRCh38] Chr4:184275265..190828225 [GRCh37] Chr4:184512259..191200788 [NCBI36] Chr4:4q35.1-35.2	pathogenic
GRCh38/hg38 4q35.1-35.2(chr4:184327081-189975519)x3	copy number gain	See cases [RCV000133708]	Chr4:184327081..189975519 [GRCh38] Chr4:185248234..190828225 [GRCh37] Chr4:185485228..191133668 [NCBI36] Chr4:4q35.1-35.2	pathogenic
GRCh38/hg38 4q35.1-35.2(chr4:184406972-188915538)x3	copy number gain	See cases [RCV000134158]	Chr4:184406972..188915538 [GRCh38] Chr4:185328126..189836692 [GRCh37] Chr4:185565120..190073686 [NCBI36] Chr4:4q35.1-35.2	pathogenic
GRCh38/hg38 4q35.1-35.2(chr4:182437091-190018185)x1	copy number loss	See cases [RCV000134276]	Chr4:182437091..190018185 [GRCh38] Chr4:183358244..190939340 [GRCh37] Chr4:183595238..191176334 [NCBI36] Chr4:4q35.1-35.2	pathogenic
GRCh38/hg38 4q34.3-35.2(chr4:180451652-190095391)x3	copy number gain	See cases [RCV000135693]	Chr4:180451652..190095391 [GRCh38] Chr4:181372805..190828225 [GRCh37] Chr4:181609799..191250527 [NCBI36] Chr4:4q34.3-35.2	likely pathogenic
GRCh38/hg38 4q31.21-35.2(chr4:145042668-189975519)x3	copy number gain	See cases [RCV000135845]	Chr4:145042668..189975519 [GRCh38] Chr4:145963820..190828225 [GRCh37] Chr4:146183270..191133668 [NCBI36] Chr4:4q31.21-35.2	pathogenic
GRCh38/hg38 4q34.1-35.2(chr4:173854560-189548183)x1	copy number loss	See cases [RCV000136115]	Chr4:173854560..189548183 [GRCh38] Chr4:174775711..190469337 [GRCh37] Chr4:175012286..190706331 [NCBI36] Chr4:4q34.1-35.2	pathogenic
GRCh38/hg38 4q31.1-35.2(chr4:138510532-189963195)x3	copy number gain	See cases [RCV000136810]	Chr4:138510532..189963195 [GRCh38] Chr4:139431686..190828225 [GRCh37] Chr4:139651136..191121344 [NCBI36] Chr4:4q31.1-35.2	pathogenic
GRCh38/hg38 4q35.1-35.2(chr4:184239531-189975519)x1	copy number loss	See cases [RCV000136942]	Chr4:184239531..189975519 [GRCh38] Chr4:185160684..190828225 [GRCh37] Chr4:185397678..191133668 [NCBI36] Chr4:4q35.1-35.2	pathogenic
GRCh38/hg38 4q34.3-35.2(chr4:177985956-189975519)x1	copy number loss	See cases [RCV000137101]	Chr4:177985956..189975519 [GRCh38] Chr4:178907110..190828225 [GRCh37] Chr4:179144104..191133668 [NCBI36] Chr4:4q34.3-35.2	pathogenic
GRCh38/hg38 4q34.3-35.2(chr4:178549472-190095391)x1	copy number loss	See cases [RCV000137262]	Chr4:178549472..190095391 [GRCh38] Chr4:179470626..190828225 [GRCh37] Chr4:179707620..191250527 [NCBI36] Chr4:4q34.3-35.2	pathogenic
GRCh38/hg38 4q34.3-35.2(chr4:178014570-190095391)x1	copy number loss	See cases [RCV000137343]	Chr4:178014570..190095391 [GRCh38] Chr4:178935724..190828225 [GRCh37] Chr4:179172718..191250527 [NCBI36] Chr4:4q34.3-35.2	pathogenic
GRCh38/hg38 4q34.3-35.2(chr4:180574962-190095391)x1	copy number loss	See cases [RCV000137345]	Chr4:180574962..190095391 [GRCh38] Chr4:181496115..190828225 [GRCh37] Chr4:181733109..191250527 [NCBI36] Chr4:4q34.3-35.2	pathogenic
GRCh38/hg38 4q32.3-35.2(chr4:166317587-190095391)x1	copy number loss	See cases [RCV000137532]	Chr4:166317587..190095391 [GRCh38] Chr4:167238739..190828225 [GRCh37] Chr4:167458189..191250527 [NCBI36] Chr4:4q32.3-35.2	pathogenic
GRCh38/hg38 4q33-35.2(chr4:169901205-190095391)x3	copy number gain	See cases [RCV000138540]	Chr4:169901205..190095391 [GRCh38] Chr4:170822356..190828225 [GRCh37] Chr4:171058931..191250527 [NCBI36] Chr4:4q33-35.2	uncertain significance
GRCh38/hg38 4q35.1-35.2(chr4:183072743-190095391)x1	copy number loss	See cases [RCV000138668]	Chr4:183072743..190095391 [GRCh38] Chr4:183993896..190828225 [GRCh37] Chr4:184230890..191250527 [NCBI36] Chr4:4q35.1-35.2	pathogenic
GRCh38/hg38 4q32.1-35.2(chr4:160757699-190091407)x3	copy number gain	See cases [RCV000140982]	Chr4:160757699..190091407 [GRCh38] Chr4:161678851..191012562 [GRCh37] Chr4:161898301..191246543 [NCBI36] Chr4:4q32.1-35.2	pathogenic
GRCh38/hg38 4q33-35.2(chr4:169873508-190018185)x1	copy number loss	See cases [RCV000140396]	Chr4:169873508..190018185 [GRCh38] Chr4:170794659..190939340 [GRCh37] Chr4:171031234..191176334 [NCBI36] Chr4:4q33-35.2	pathogenic
GRCh38/hg38 4q32.3-35.2(chr4:165281036-190018185)x1	copy number loss	See cases [RCV000140414]	Chr4:165281036..190018185 [GRCh38] Chr4:166202188..190939340 [GRCh37] Chr4:166421638..191176334 [NCBI36] Chr4:4q32.3-35.2	pathogenic
GRCh38/hg38 4q34.3-35.2(chr4:179295511-190036318)x3	copy number gain	See cases [RCV000140450]	Chr4:179295511..190036318 [GRCh38] Chr4:180216665..190957473 [GRCh37] Chr4:180453659..191194467 [NCBI36] Chr4:4q34.3-35.2	pathogenic
GRCh38/hg38 4q34.1-35.2(chr4:173989029-189975519)x1	copy number loss	See cases [RCV000141490]	Chr4:173989029..189975519 [GRCh38] Chr4:174910180..190828225 [GRCh37] Chr4:175146755..191133668 [NCBI36] Chr4:4q34.1-35.2	pathogenic
GRCh38/hg38 4q35.1-35.2(chr4:182732498-187998523)x4	copy number gain	See cases [RCV000141753]	Chr4:182732498..187998523 [GRCh38] Chr4:183653651..188919677 [GRCh37] Chr4:183890645..189156671 [NCBI36] Chr4:4q35.1-35.2	likely pathogenic
GRCh38/hg38 4q32.3-35.2(chr4:167373716-190036318)x1	copy number loss	See cases [RCV000141964]	Chr4:167373716..190036318 [GRCh38] Chr4:168294867..190957473 [GRCh37] Chr4:168531442..191194467 [NCBI36] Chr4:4q32.3-35.2	pathogenic
GRCh38/hg38 4q34.3-35.1(chr4:181762338-185175891)x1	copy number loss	See cases [RCV000142279]	Chr4:181762338..185175891 [GRCh38] Chr4:182683491..186097045 [GRCh37] Chr4:182920485..186334039 [NCBI36] Chr4:4q34.3-35.1	uncertain significance
GRCh38/hg38 4q32.3-35.2(chr4:168970400-186936738)x1	copy number loss	See cases [RCV000142368]	Chr4:168970400..186936738 [GRCh38] Chr4:169891551..187857892 [GRCh37] Chr4:170128126..188094886 [NCBI36] Chr4:4q32.3-35.2	pathogenic
GRCh38/hg38 4q34.1-35.2(chr4:172501374-190095332)x1	copy number loss	See cases [RCV000143079]	Chr4:172501374..190095332 [GRCh38] Chr4:173422525..190828225 [GRCh37] Chr4:173659100..191250468 [NCBI36] Chr4:4q34.1-35.2	pathogenic
GRCh38/hg38 4q33-35.2(chr4:170899124-190036318)x1	copy number loss	See cases [RCV000143232]	Chr4:170899124..190036318 [GRCh38] Chr4:171820275..190957473 [GRCh37] Chr4:172056850..191194467 [NCBI36] Chr4:4q33-35.2	pathogenic
GRCh38/hg38 4q32.3-35.2(chr4:168119317-190095391)x3	copy number gain	See cases [RCV000143331]	Chr4:168119317..190095391 [GRCh38] Chr4:169040468..190828225 [GRCh37] Chr4:169277043..191250527 [NCBI36] Chr4:4q32.3-35.2	pathogenic
GRCh38/hg38 4q28.3-35.2(chr4:134935616-190036318)x3	copy number gain	See cases [RCV000143559]	Chr4:134935616..190036318 [GRCh38] Chr4:135856771..190957473 [GRCh37] Chr4:136076221..191194467 [NCBI36] Chr4:4q28.3-35.2	pathogenic
GRCh38/hg38 4q34.3-35.2(chr4:176756632-189621964)x1	copy number loss	See cases [RCV000143626]	Chr4:176756632..189621964 [GRCh38] Chr4:177677786..190543118 [GRCh37] Chr4:177914780..190780112 [NCBI36] Chr4:4q34.3-35.2	likely pathogenic
GRCh38/hg38 4q34.3-35.1(chr4:181579626-186100199)x1	copy number loss	See cases [RCV000148272]	Chr4:181579626..186100199 [GRCh38] Chr4:182500779..187021353 [GRCh37] Chr4:182737773..187258347 [NCBI36] Chr4:4q34.3-35.1	pathogenic
GRCh38/hg38 4q28.3-35.2(chr4:131985253-190095391)x3	copy number gain	See cases [RCV000137721]	Chr4:131985253..190095391 [GRCh38] Chr4:132906408..190828225 [GRCh37] Chr4:133125858..191250527 [NCBI36] Chr4:4q28.3-35.2	pathogenic\|likely benign
GRCh38/hg38 4q34.3-35.2(chr4:180717850-190095391)x3	copy number gain	See cases [RCV000143010]	Chr4:180717850..190095391 [GRCh38] Chr4:181639003..190828225 [GRCh37] Chr4:181875997..191250527 [NCBI36] Chr4:4q34.3-35.2	pathogenic\|likely benign
GRCh38/hg38 4q28.1-35.1(chr4:125432943-185761887)x3	copy number gain	See cases [RCV000138578]	Chr4:125432943..185761887 [GRCh38] Chr4:126354098..186683041 [GRCh37] Chr4:126573548..186920035 [NCBI36] Chr4:4q28.1-35.1	pathogenic\|likely benign
GRCh38/hg38 4q35.1-35.2(chr4:184327081-189975519)x1	copy number loss	See cases [RCV000133709]	Chr4:184327081..189975519 [GRCh38] Chr4:185248234..190896674 [GRCh37] Chr4:185485228..191133668 [NCBI36] Chr4:4q35.1-35.2	likely pathogenic\|likely benign

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	438
Count of miRNA genes:	380
Interacting mature miRNAs:	402
Transcripts:	ENST00000604660, ENST00000605270
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

adipose tissue

appendage

entire extraembryonic component

High

Medium

Low

477

559

280

808

960

298

2650

129

342

232

171

774

Below cutoff

1634

1914

1033

354

881

230

2581

1467

988

242

837

1026

131

782

1626

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_147158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC099343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI582207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DA397021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000604660

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	4	184,506,918 - 184,509,688 (-)	Ensembl

RefSeq Acc Id:

ENST00000605270

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	4	184,503,271 - 184,537,626 (-)	Ensembl

RefSeq Acc Id:

ENST00000696856

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	4	184,506,860 - 184,513,227 (-)	Ensembl

RefSeq Acc Id:

NR_147158

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	4	184,506,460 - 184,537,583 (-)	NCBI
T2T-CHM13v2.0	4	187,850,295 - 187,881,416 (-)	NCBI

Sequence:

show sequence

AGGTTTCCTGTGGCTTGGGGCTCCGCCCGGTATGGGGAAAGTTTAAGGCGGAAGAGCCCTCGTT
TGTCGGCTGCTTGGGAAGTCTGAGGATTACTGGGACTAACAGGACTTCAGCTGGGGCTTCAACG
TGTGGTGTGGGCTTCCTGACACCACGGCCACTGGTTTCCAAGAGTTTCAACAATATTTTCATCA
TATTTATTGAAGGCCTCACTGACAGACTTCTCAAGGCCCCTCTACCTTCTATTCGCTGCCTGGC
CCCAAAGCCAGTGCCACACATTTTAGGTTTTTAACTGCAGCAGCACCTATGATGTTTCCAAAAT
CTGTATCATTAAAGTTTGATCAGAGAAGCAAAACCACCTTGAGCAAAACAAGGAATTTATTAAA
GAGATTAGGATACACATTGTTATGAAAGCTGCAACCTGCTGCCCCTGTGTCCAGAAGTGGGCCT
GAAGTCAGCAGGGCTGGCAAATGGATGTGCAGTGGGAGAGAGTAGGCGTGAGCTGCACCTGCAG
GGAGGAGATGGAACTCCTGTGGATGGACTGAAACTGATGTCTTCCACGTCAGCCTCTCAGGCCT
CCAACACTCCAGCGCTGATGATGAAGATGACCTGCAGAGGAGCTGGTGCCCTTCACCATGGAAT
TGCTCATAAACCCAAGATTCAGTGAAGCTGAAGAAGCAGTTCTGGTGGGAGCTGGAGGAACTGC
AGGCACAGCTGCTGCCCTGTACCAATACATTGAGCCAGTGGCTGCCTGGCATTGTGTGTGAGCC
ACCACAGCGCCTGGCCCTACACAGACTTTGACTGTAAATATGACTGCTGTTTCACTTCTGCCTT
CCAAATTTTGCTCAGATTTTCTGAGAAACATAGTTCAGCTTAGGTACATTGACACAGTACAAAG
CCACCGCAGTGGCTGGTTAGGGAGGGATTATGAATGCAGGCTGAGAATGCACGGGAAGCGTTTG
TCTATTTATAGAGTAGGTACCATTCAAGGATTTATGTGAATCAGGTGCAAAGAACTCACACAAA
GATGGGGAAAGTTAGTACTTAGAAATCAGTGATACTAGATAACCAATAAATAAAAATAAACTTA
AAAAAAAAAA

hide sequence

Promoters

RGD ID:

15095833

Promoter ID:

EPDNEWNC_H676

Type:

initiation region

Name:

LINC02427_1

Description:

long intergenic non-protein coding RNA 2427 [Source:HGNCSymbol;Acc:HGNC:53358]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	4	184,537,539 - 184,537,599	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
COSMIC	LINC02427	COSMIC
Ensembl Genes	ENSG00000271538	Ensembl
GTEx	ENSG00000271538	GTEx
HGNC ID	HGNC:53358	ENTREZGENE
Human Proteome Map	LINC02427	Human Proteome Map
NCBI Gene	LINC02427	ENTREZGENE
RNAcentral	URS0000BC43EE	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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